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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002378 ID=TCONS_00002378|Name=TCONS_00002378|organism=Clytia hemisphaerica|type=transcript|length=1560bp
CCGCGCGGTCCATCCAAATACTTAGGCGaacacttcaagtcggctcgcat
aatttcttatacgcgcgccaccattcagatctctgattcgctaggaccaa
ccaatcagaatatccgcataatcatcctcagatcagaatgcagatgatct
aggtaaaccagagaccgtaaacataagaaatatcaaaatcaagaaaaaag
tttacgggctggatatccaggctaagaaTTTACAATCGATAAACAGACTC
TCATTTCCCTACAGGGTGTCCCATAATAACAGATTTTGATGAGCAGtaga
ttttattgttttatggGACACCCTGCGGAGATAATTGTTGCTGAAAAATT
CAAGAATGTTAAATCATGATGAATGCCAAATTCTTCAGAATTGTAACAAT
CAAAatgtttattcaattttttctacACAAAGTAGAGTTGATTTTCTCAA
ATAGCAACTTGAAAAACACGGGGTTACGATAATCGGCATTATCTTTTACA
ACAATATTTCCATTTTGAAGGACAGGGGACTGGTCAATGAAACTGCTCTC
GATTAAATTGATTGTGTTATCATCGTTGAATTTCATTGGTTGGTATGTAT
CATctaccttttccttaaaaaaaggtAAATGGTAAAAGGTAACTTCgtat
tcttcttcttctttcaaatGCTCCATTAATTCATCTATTGTTATGCTTGT
AAATTCGAAGGAAGTGTAAATTCTTGTCGCGTCATCCACAGTGATTGTGT
GAAACGTTACCTTGGGGAAAACAGCTTGAATAATAATATTCCAAAAGTCA
TAGATTGCATAATGATTACCACCAACATATTTCTCCCAACAATAGAAATC
AATCTCTTTGGACGATGAACATTGAACTTTTAAATGAGGTGAATATTTTT
CACGCCAGTCGTACCGTGGATTGATCATTTGATCCATTAGAATTTGATGC
AAGTGTGGATCGAATGCATGCTTGGTATTATATGTATATGGATTGGGATC
TGGGGTGCGACTTAgaataaagttttcttttcgtaTCCAATCAAGAAATA
ATTCATCGCTAGTATAATCAAAACTCCATACGACGAAATCGCTTTCTTTT
CGTTCCCACATTTTTTTCGCTTTCTTGATCACTGAAATCTGTTTTTTTAA
AGTATGTACCTGGTACCCATCTACCAaaaagaaaatcgtttgtttgcTAG
TAATGTTATTATATGGCATGTTTTCCAACACCTTTATCAATTCATTACCA
TCAGTCCGTGTTATAGCTTGGAAATCAGTCTCGAAAAATTCTCTATAATT
TTCCTCAGTAAACCGAACCAAGCAGCTTTGTATTGGagaaaatgcccaaa
atgtAAAGCAAGGTTTATCCAATATTGATTTGACTAAGTATTTTAACTGT
GTATCCATGTAatttaagttttcaaaatttatattaGGATTTCCTACAGC
CTCATCCTTGATTATAATAGTCGGAATAAGGGTGATGTTTCTGACTTCTA
AACACGATGAAACCATCAGGTCTCCCCTAGTAATTGATGCCAATAAAAGC
ACACCAAAAC Run BLAST on NCBI protein sequence of TCONS_00002378-protein >TCONS_00002378-protein ID=TCONS_00002378-protein|Name=TCONS_00002378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
FGVLLLASITRGDLMVSSCLEVRNITLIPTIIIKDEAVGNPNINFENLNY
MDTQLKYLVKSILDKPCFTFWAFSPIQSCLVRFTEENYREFFETDFQAIT
RTDGNELIKVLENMPYNNITSKQTIFFLVDGYQVHTLKKQISVIKKAKKM
WERKESDFVVWSFDYTSDELFLDWIRKENFILSRTPDPNPYTYNTKHAFD
PHLHQILMDQMINPRYDWREKYSPHLKVQCSSSKEIDFYCWEKYVGGNHY
AIYDFWNIIIQAVFPKVTFHTITVDDATRIYTSFEFTSITIDELMEHLKE
EEEYEVTFYHLPFFKEKVDDTYQPMKFNDDNTINLIESSFIDQSPVLQNG
NIVVKDNADYRNPVFFKLLFEKINSTLCRKN Run BLAST on NCBI transcript from alignment at sc0000019:413769..415328 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002378 ID=TCONS_00002378|Name=TCONS_00002378|organism=Clytia hemisphaerica|type=transcript|length=1560bp|location=Sequence derived from alignment at sc0000019:413769..415328 (Clytia hemisphaerica)
GTTTTGGTGTGCTTTTATTGGCATCAATTACTAGGGGAGACCTGATGGTT
TCATCGTGTTTAGAAGTCAGAAACATCACCCTTATTCCGACTATTATAAT
CAAGGATGAGGCTGTAGGAAATCCtaatataaattttgaaaacttaaatT
ACATGGATACACAGTTAAAATACTTAGTCAAATCAATATTGGATAAACCT
TGCTTTacattttgggcattttctCCAATACAAAGCTGCTTGGTTCGGTT
TACTGAGGAAAATTATAGAGAATTTTTCGAGACTGATTTCCAAGCTATAA
CACGGACTGATGGTAATGAATTGATAAAGGTGTTGGAAAACATGCCATAT
AATAACATTACTAgcaaacaaacgattttcttttTGGTAGATGGGTACCA
GGTACATACTTTAAAAAAACAGATTTCAGTGATCAAGAAAGCGAAAAAAA
TGTGGGAACGAAAAGAAAGCGATTTCGTCGTATGGAGTTTTGATTATACT
AGCGATGAATTATTTCTTGATTGGAtacgaaaagaaaactttattcTAAG
TCGCACCCCAGATCCCAATCCATATACATATAATACCAAGCATGCATTCG
ATCCACACTTGCATCAAATTCTAATGGATCAAATGATCAATCCACGGTAC
GACTGGCGTGAAAAATATTCACCTCATTTAAAAGTTCAATGTTCATCGTC
CAAAGAGATTGATTTCTATTGTTGGGAGAAATATGTTGGTGGTAATCATT
ATGCAATCTATGACTTTTGGAATATTATTATTCAAGCTGTTTTCCCCAAG
GTAACGTTTCACACAATCACTGTGGATGACGCGACAAGAATTTACACTTC
CTTCGAATTTACAAGCATAACAATAGATGAATTAATGGAGCatttgaaag
aagaagaagaatacGAAGTTACCTTTTACCATTTacctttttttaaggaa
aaggtagATGATACATACCAACCAATGAAATTCAACGATGATAACACAAT
CAATTTAATCGAGAGCAGTTTCATTGACCAGTCCCCTGTCCTTCAAAATG
GAAATATTGTTGTAAAAGATAATGCCGATTATCGTAACCCCGTGTTTTTC
AAGTTGCTATTTGAGAAAATCAACTCTACTTTGTgtagaaaaaattgaat
aaacatTTTGATTGTTACAATTCTGAAGAATTTGGCATTCATCATGATTT
AACATTCTTGAATTTTTCAGCAACAATTATCTCCGCAGGGTGTCccataa
aacaataaaatctaCTGCTCATCAAAATCTGTTATTATGGGACACCCTGT
AGGGAAATGAGAGTCTGTTTATCGATTGTAAAttcttagcctggatatcc
agcccgtaaacttttttcttgattttgatatttcttatgtttacggtctc
tggtttacctagatcatctgcattctgatctgaggatgattatgcggata
ttctgattggttggtcctagcgaatcagagatctgaatggtggcgcgcgt
ataagaaattatgcgagccgacttgaagtgttCGCCTAAGTATTTGGATG
GACCGCGCGG Coding sequence (CDS) from alignment at sc0000019:413769..415328 >TCONS_00002378 ID=TCONS_00002378|Name=TCONS_00002378|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0000019:413769..415328 (Clytia hemisphaerica)
TTTGGTGTGCTTTTATTGGCATCAATTACTAGGGGAGACCTGATGGTTTC
ATCGTGTTTAGAAGTCAGAAACATCACCCTTATTCCGACTATTATAATCA
AGGATGAGGCTGTAGGAAATCCtaatataaattttgaaaacttaaatTAC
ATGGATACACAGTTAAAATACTTAGTCAAATCAATATTGGATAAACCTTG
CTTTacattttgggcattttctCCAATACAAAGCTGCTTGGTTCGGTTTA
CTGAGGAAAATTATAGAGAATTTTTCGAGACTGATTTCCAAGCTATAACA
CGGACTGATGGTAATGAATTGATAAAGGTGTTGGAAAACATGCCATATAA
TAACATTACTAgcaaacaaacgattttcttttTGGTAGATGGGTACCAGG
TACATACTTTAAAAAAACAGATTTCAGTGATCAAGAAAGCGAAAAAAATG
TGGGAACGAAAAGAAAGCGATTTCGTCGTATGGAGTTTTGATTATACTAG
CGATGAATTATTTCTTGATTGGAtacgaaaagaaaactttattcTAAGTC
GCACCCCAGATCCCAATCCATATACATATAATACCAAGCATGCATTCGAT
CCACACTTGCATCAAATTCTAATGGATCAAATGATCAATCCACGGTACGA
CTGGCGTGAAAAATATTCACCTCATTTAAAAGTTCAATGTTCATCGTCCA
AAGAGATTGATTTCTATTGTTGGGAGAAATATGTTGGTGGTAATCATTAT
GCAATCTATGACTTTTGGAATATTATTATTCAAGCTGTTTTCCCCAAGGT
AACGTTTCACACAATCACTGTGGATGACGCGACAAGAATTTACACTTCCT
TCGAATTTACAAGCATAACAATAGATGAATTAATGGAGCatttgaaagaa
gaagaagaatacGAAGTTACCTTTTACCATTTacctttttttaaggaaaa
ggtagATGATACATACCAACCAATGAAATTCAACGATGATAACACAATCA
ATTTAATCGAGAGCAGTTTCATTGACCAGTCCCCTGTCCTTCAAAATGGA
AATATTGTTGTAAAAGATAATGCCGATTATCGTAACCCCGTGTTTTTCAA
GTTGCTATTTGAGAAAATCAACTCTACTTTGTgtagaaaaaattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002378-exon-sc0000019-1491911889:413769..415328 | TCONS_00002378-exon-sc0000019-1491911889:413769..415328 | Clytia hemisphaerica | exon |
| TCONS_00002378-exon-sc0000019-1510915933:413769..415328 | TCONS_00002378-exon-sc0000019-1510915933:413769..415328 | Clytia hemisphaerica | exon |
| TCONS_00002378-exon-sc0000019-1575043694:413769..415328 | TCONS_00002378-exon-sc0000019-1575043694:413769..415328 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:413769..415328 . |
Blast
The following BLAST results are available for this feature:
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