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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002241 ID=TCONS_00002241|Name=TCONS_00002241|organism=Clytia hemisphaerica|type=transcript|length=2667bpRun BLAST on NCBI protein sequence of TCONS_00002241-protein >TCONS_00002241-protein ID=TCONS_00002241-protein|Name=TCONS_00002241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=610bp MQTTNISTDAQGSTPYITLQPVSVDGGELTSGTLVQEGVNLQQAVMTNSNRun BLAST on NCBI transcript from alignment at sc0000019:323569..327825+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002241 ID=TCONS_00002241|Name=TCONS_00002241|organism=Clytia hemisphaerica|type=transcript|length=4257bp|location=Sequence derived from alignment at sc0000019:323569..327825+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000019:323569..327825+ >TCONS_00002241 ID=TCONS_00002241|Name=TCONS_00002241|organism=Clytia hemisphaerica|type=CDS|length=9165bp|location=Sequence derived from alignment at sc0000019:323569..327825+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002241 vs. Swiss-Prot (Human)
Match: ZFP37 (Zinc finger protein 37 homolog OS=Homo sapiens GN=ZFP37 PE=2 SV=3) HSP 1 Score: 158.688 bits (400), Expect = 2.328e-40 Identity = 84/207 (40.58%), Postives = 114/207 (55.07%), Query Frame = 1
Query: 679 PRSCDQCGRTFKYPSDLKKHLQIHTDIKKFQCEDCNRSFRRLHQLNVHRRIHTGEKPYVCNRCNAQFRHDSTLTMHIRTRHDHLKPFTCDGCSKKFGRMSHLRKHQHNVCGRTSIRTSIAQCKYCDAIFSKKSDLKSHFPVCEKKPERVEKDLNAQQVYQCETCGKVFSRVYDFKRHQLSHSDEKPYGCPQCGKTFKERSSLNKHVK 1299
P C++CG+ FKY S L KH++IHT K F+C +C ++F + L +H+R HT EKPY CN C F H S+LT H+RT H PF C+ C K F ++ L +HQ R +C C FS+KS L H ++ ++ Y+C C K F+ HQ SH+ EKPY C +CGKTFK+ +SL KHVK
Sbjct: 432 PYECNECGKAFKYSSSLTKHMRIHTGEKPFECNECGKAFSKKSHLIIHQRTHTKEKPYKCNECGKAFGHSSSLTYHMRT-HTGESPFECNQCGKGFKQIEGLTQHQ-----RVHTGEKPYECNECGKAFSQKSHLIVH-----------QRTHTGEKPYECNECEKAFNAKSQLVIHQRSHTGEKPYECNECGKTFKQNASLTKHVK 621 HSP 2 Score: 126.716 bits (317), Expect = 4.467e-30 Identity = 74/207 (35.75%), Postives = 97/207 (46.86%), Query Frame = 1
Query: 679 PRSCDQCGRTFKYPSDLKKHLQIHTDIKKFQCEDCNRSFRRLHQLNVHRRIHTGEKPYVCNRCNAQFRHDSTLTMHIRTRHDHLKPFTCDGCSKKFGRMSHLRKHQHNVCGRTSIRTSIAQCKYCDAIFSKKSDLKSHFPVCEKKPERVEKDLNAQQVYQCETCGKVFSRVYDFKRHQLSHSDEKPYGCPQCGKTFKERSSLNKHVK 1299
P C++CG F S L H + HT K ++C C ++ H L H RIHTGEKPY C C FRH S L H+R+ H KP+ C C K F S L +H RT +C C F S L H + ++ ++C CGK FS+ HQ +H+ EKPY C +CGK F SSL H++
Sbjct: 320 PYECNECGIAFSQKSHLVVHQRTHTGEKPYECIQCGKAHGHKHALTDHLRIHTGEKPYECAECGKTFRHSSNLIQHVRS-HTGEKPYECKECGKSFRYNSSLTEHV-----RTHTGEIPYECNECGKAFKYSSSLTKHMRI-----------HTGEKPFECNECGKAFSKKSHLIIHQRTHTKEKPYKCNECGKAFGHSSSLTYHMR 509 HSP 3 Score: 99.7525 bits (247), Expect = 1.828e-21 Identity = 65/194 (33.51%), Postives = 88/194 (45.36%), Query Frame = 1
Query: 733 KHLQIHTDIKKFQCEDCNRSFRRLHQLNVHRRIHTGEKPYVCNRCNAQFRHDSTLTMHIRTRHDHLKPFTCDGCSKKFGRMSHLRKHQHNVCGRTSIRTSIA--QCKYCDAIFSKKSDLKSHFPVCEKKPERVEKDLNAQQVYQCETCGKVFSRVYDFKRHQLSHSDEKPYGCPQCGKTFKERSSLNKHVKRMH 1308
KH + +K ++C C + L H+R+HTGEKPY CN C F S L +H RT H KP+ C C K G H+H + I T +C C F S+L H + ++ Y+C+ CGK F H +H+ E PY C +CGK FK SSL KH+ R+H
Sbjct: 282 KHEKPQACVKPYECNQCGKVLSHKQGLIDHQRVHTGEKPYECNECGIAFSQKSHLVVHQRT-HTGEKPYECIQCGKAHG-------HKHALTDHLRIHTGEKPYECAECGKTFRHSSNLIQHV-----------RSHTGEKPYECKECGKSFRYNSSLTEHVRTHTGEIPYECNECGKAFKYSSSLTKHM-RIH 455 HSP 4 Score: 98.2117 bits (243), Expect = 5.276e-21 Identity = 51/145 (35.17%), Postives = 71/145 (48.97%), Query Frame = 1
Query: 658 RRRLSTDPRSCDQCGRTFKYPSDLKKHLQIHTDIKKFQCEDCNRSFRRLHQLNVHRRIHTGEKPYVCNRCNAQFRHDSTLTMHIRTRHDHLKPFTCDGCSKKFGRMSHLRKHQHNVCGRTSIRTSIAQCKYCDAIFSKKSDLKSH 1092
R P C++CG+ F + S L H++ HT F+C C + F+++ L H+R+HTGEKPY CN C F S L +H RT H KP+ C+ C K F S L HQ R+ +C C F + + L H
Sbjct: 481 RTHTKEKPYKCNECGKAFGHSSSLTYHMRTHTGESPFECNQCGKGFKQIEGLTQHQRVHTGEKPYECNECGKAFSQKSHLIVHQRT-HTGEKPYECNECEKAFNAKSQLVIHQ-----RSHTGEKPYECNECGKTFKQNASLTKH 619 HSP 5 Score: 85.1149 bits (209), Expect = 6.480e-17 Identity = 63/205 (30.73%), Postives = 85/205 (41.46%), Query Frame = 1
Query: 685 SCDQCGRTFKYPSDLKKHLQIHTDIKKFQCEDCNRSFRRLHQLNVHRRIHTGEKPYVCNRCNAQFRHDSTLTMHIRTRHDHLKPFTCDGCSKKFGRMSHLRKHQHNVCGRTSIRTSIAQCKYCDAIFSKKSDLKSHFPVCEKKPERVEKDLNAQQVYQCETCGKVFSRVYDFKRHQLSHSDEKPYGCPQCGKTFKERSSLNKHVK 1299
S D+C +T K L H H K Q + + L H + KPY CN+C H L H R H KP+ C+ C F + SHL HQ RT +C C K L H + ++ Y+C CGK F + +H SH+ EKPY C +CGK+F+ SSL +HV+
Sbjct: 238 SSDKCNKTGKKHDKLCCHSSSHIKQDKIQTGEKHEKSPSLSSSTKHEKPQACVKPYECNQCGKVLSHKQGLIDHQRV-HTGEKPYECNECGIAFSQKSHLVVHQ-----RTHTGEKPYECIQCGKAHGHKHALTDHLRI-----------HTGEKPYECAECGKTFRHSSNLIQHVRSHTGEKPYECKECGKSFRYNSSLTEHVR 425 The following BLAST results are available for this feature:
BLAST of TCONS_00002241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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