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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022112 ID=TCONS_00022112|Name=TCONS_00022112|organism=Clytia hemisphaerica|type=transcript|length=1489bpRun BLAST on NCBI protein sequence of TCONS_00022112-protein >TCONS_00022112-protein ID=TCONS_00022112-protein|Name=TCONS_00022112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp MEVDKDQLLDEISLNKMTFRVNDQGIAEYSDDDSENDEASLASYNMLDYFRun BLAST on NCBI transcript from alignment at sc0000405:40498..49614- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022112 ID=TCONS_00022112|Name=TCONS_00022112|organism=Clytia hemisphaerica|type=transcript|length=9117bp|location=Sequence derived from alignment at sc0000405:40498..49614- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000405:40498..49614- >TCONS_00022112 ID=TCONS_00022112|Name=TCONS_00022112|organism=Clytia hemisphaerica|type=CDS|length=9747bp|location=Sequence derived from alignment at sc0000405:40498..49614- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022112 vs. Swiss-Prot (Human)
Match: DAPP1 (Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide OS=Homo sapiens GN=DAPP1 PE=1 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 1.293e-52 Identity = 92/234 (39.32%), Postives = 142/234 (60.68%), Query Frame = 1
Query: 382 IEDLPFYHPGVTRNTCEALLLANGIEGSYLVRPSGNEKDRFTVSVRCSNSIKHYALDINHFKHTYAFGIAQFDSIDELSEHFKCMPVLGSESGTSVTLRHPYKHDIPEPTQYEHVVRHAELGKQTSFNQDMAKPSPDLHIASKEGYLIKRGAIHKNWKKRWFVLQKNXXXXXXXXXXSTPIKTIDLVDAMHAVEDFCDGRNNCFRLAMPTRIFYFVASSPSEAKSWIELLQWKI 1083
++DL +YH +TR+ EALLL+NG +GSYL+R S +++SVR +S+KH+ + + +++ FG +F S+ + +HF P++GSE+GT + L+HPY + EP+ YE V H + QT +D P+ + +KEGYL K+G + K WK RWF L +N LKY+K++ PI+ +DL + D+ R NCF L P R FY A + EA WI++L+WK+
Sbjct: 30 LQDLGWYHGNLTRHAAEALLLSNGCDGSYLLRDSNETTGLYSLSVRAKDSVKHF--HVEYTGYSFKFGFNEFSSLKDFVKHFANQPLIGSETGTLMVLKHPYPRKVEEPSIYESVRVHTAM--QTGRTEDDLVPTAP-SLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKL 258 The following BLAST results are available for this feature:
BLAST of TCONS_00022112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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