|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022031 ID=TCONS_00022031|Name=TCONS_00022031|organism=Clytia hemisphaerica|type=transcript|length=2777bpRun BLAST on NCBI protein sequence of TCONS_00022031-protein >TCONS_00022031-protein ID=TCONS_00022031-protein|Name=TCONS_00022031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=650bp MFGPGVGIGLHTIRPKRRSTLDLMHDLLKDIATSSLFNSFIMFIIGINAIRun BLAST on NCBI transcript from alignment at sc0000403:211982..229012+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022031 ID=TCONS_00022031|Name=TCONS_00022031|organism=Clytia hemisphaerica|type=transcript|length=17031bp|location=Sequence derived from alignment at sc0000403:211982..229012+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000403:211982..229012+ >TCONS_00022031 ID=TCONS_00022031|Name=TCONS_00022031|organism=Clytia hemisphaerica|type=CDS|length=23436bp|location=Sequence derived from alignment at sc0000403:211982..229012+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022031 vs. Swiss-Prot (Human)
Match: CTSR3 (Cation channel sperm-associated protein 3 OS=Homo sapiens GN=CATSPER3 PE=2 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.102e-47 Identity = 115/362 (31.77%), Postives = 204/362 (56.35%), Query Frame = 2
Query: 101 IGLHTIRPKRRSTLDLMHDLLKDIATSSLFNSFIMFIIGINAIVIGLETSISLKKVYGETFSLLDDLFLAIYTAEFLIKVCADYRGYWKSAYNIFDFVIIAVSFIQILMSSLDVGNN--SLGVFXXXXXXXXXXXISFVEGLQVLVTALIDTIRNSXXXXXXXXXXXXXXXGVAGYYIFGYDEDGDRERWGTLNNAMLTLFTFVTADGWTDIQRRLEEK-YPGSQWFTVVFLFLGHFIFTNLFIGIIIMNIHEATEKFLQAQRFEKEAQLSLKKEYLYKRQHEDVRQMLEKQKTSHYTNFNEMASSFVKTLRHDDYVIMKDVCTNLLWIETYIDSLDYLDLYMHRVQHGHRNFALVLAEMAE 1177
+G K + D +K + S F ++ + NA + L TS ++ + F++I T+E +KV D YWK+ YN+ D +II V F+ + L +G L + +++LR L+ I + +G++ L+TA+ T+ +V +V+ LL LLM F + G+ +FG ++GD + WG L A TLF+ T DGWTD+Q++L+ + + S+ FT++F+ L FIF N+F+G++IM+ ++ KF + E++ L +K+ + +RQ E++ +++ QK + T+F+E+ +F KTL H D +++ D T+L +I+ Y +LDY D +H++Q + VL+ M E
Sbjct: 23 VGFCPTFKKFKRNDDECRAFVKRVIMSRFFKIIMISTVTSNAFFMALWTSYDIRYRLFRLLEFSEIFFVSICTSELSMKVYVDPINYWKNGYNLLDVIIIIVMFLPYALRQL-MGKQFTYLYIADGMQSLRILKLIGYSQGIRTLITAVGQTVY-TVASVLLLLFLLMYIFAILGFCLFGSPDNGDHDNWGNLAAAFFTLFSLATVDGWTDLQKQLDNREFALSRAFTIIFILLASFIFLNMFVGVMIMHTEDSIRKFERELMLEQQEMLMGEKQVILQRQQEEISRLMHIQKNADCTSFSELVENFKKTLSHTDPMVLDDFGTSLPFIDIYFSTLDYQDTTVHKLQELYYEIVHVLSLMLE 382 The following BLAST results are available for this feature:
BLAST of TCONS_00022031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.