TCONS_00022001 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022001
Unique NameTCONS_00022001
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022001 ID=TCONS_00022001|Name=TCONS_00022001|organism=Clytia hemisphaerica|type=transcript|length=792bp
gtccctttttatgtttcatctttattttatttagtattatcaacactttc
tctccttgaggtcagatctctgatcttcaccatatatatgtAAATCCTGT
ACATATGGTACAATCAACGATATTAAAAAGTACTACTCCTTCGAGCAAGC
TGCAAGTATATAAATAATGTTATCTTTAAAACCACaagaaaaaactaaca
aaaacaattaaatagtgtttaaatttttaaaacgtTAGTTAATATTTGGT
GCATGAAACAAAAAGCAATCAATCTCTAAAGGTTGTTTGCCTGCGTAGAT
GAGTTTCCTCCTCGGTCAAAGCTAAATCTTCCTCGGGTACTTATCCTGTG
CATTTGAGAATCTCTGCCTGAGGAAGTGTGTATTGGATACATCTCAAATT
GACACAAAATCGAAATCTTGAGTTAACTTGGAATGTCTGGTCTGGTGGGG
TGTAGAGGCATCCGTCACCACATGAAGGTCACCGATCATTATCACTCTTT
TGCATCGTTTACATTTTTGGGGCTCTACCTTTTTGCTTCTTAAAGTAACA
GAGTATCCAATCTGCACCTTCAACGTTCACTATCCCAGCATTCACACCAC
CAACATTTGCATTTGCTCTACCAACATTAACAGTTACGTTTGGTCCACCA
ACGTTCTCATTTGCATTCACTCCATCAACGTTCCAATTTGCATTCTCTCC
ACCAACATTTGCATTCGCTCCATCAACATTCGCTACACCAGCCTCAACAG
TATTTCTGGCTCCACTTCCAACCAAATTATTTTGtcttttgt
Run BLAST on NCBI

transcript from alignment at sc0000401:8209..9000

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022001 ID=TCONS_00022001|Name=TCONS_00022001|organism=Clytia hemisphaerica|type=transcript|length=792bp|location=Sequence derived from alignment at sc0000401:8209..9000 (Clytia hemisphaerica)
acaaaagaCAAAATAATTTGGTTGGAAGTGGAGCCAGAAATACTGTTGAG
GCTGGTGTAGCGAATGTTGATGGAGCGAATGCAAATGTTGGTGGAGAGAA
TGCAAATTGGAACGTTGATGGAGTGAATGCAAATGAGAACGTTGGTGGAC
CAAACGTAACTGTTAATGTTGGTAGAGCAAATGCAAATGTTGGTGGTGTG
AATGCTGGGATAGTGAACGTTGAAGGTGCAGATTGGATACTCTGTTACTT
TAAGAAGCAAAAAGGTAGAGCCCCAAAAATGTAAACGATGCAAAAGAGTG
ATAATGATCGGTGACCTTCATGTGGTGACGGATGCCTCTACACCCCACCA
GACCAGACATTCCAAGTTAACTCAAGATTTCGATTTTGTGTCAATTTGAG
ATGTATCCAATACACACTTCCTCAGGCAGAGATTCTCAAATGCACAGGAT
AAGTACCCGAGGAAGATTTAGCTTTGACCGAGGAGGAAACTCATCTACGC
AGGCAAACAACCTTTAGAGATTGATTGCTTTTTGTTTCATGCACCAAATA
TTAACTAacgttttaaaaatttaaacactatttaattgtttttgttagtt
ttttcttGTGGTTTTAAAGATAACATTATTTATATACTTGCAGCTTGCTC
GAAGGAGTAGTACTTTTTAATATCGTTGATTGTACCATATGTACAGGATT
Tacatatatatggtgaagatcagagatctgacctcaaggagagaaagtgt
tgataatactaaataaaataaagatgaaacataaaaagggac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012348XLOC_012348Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022001-exon-sc0000401-1491911889:8209..9000TCONS_00022001-exon-sc0000401-1491911889:8209..9000Clytia hemisphaericaexon
TCONS_00022001-exon-sc0000401-1510915933:8209..9000TCONS_00022001-exon-sc0000401-1510915933:8209..9000Clytia hemisphaericaexon
TCONS_00022001-exon-sc0000401-1575043694:8209..9000TCONS_00022001-exon-sc0000401-1575043694:8209..9000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:8209..9000 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.06451	1.17018	1.6881	1.58308	0.635469	1.19959	0.122129	0.0424837	0.0707603	0.0549686	0	0	0	0	0	0	0	0.0641111	0.132233	0	0.0879588	0	0	0.070351
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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