|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002070 ID=TCONS_00002070|Name=TCONS_00002070|organism=Clytia hemisphaerica|type=transcript|length=1244bp
TTAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTGAAGGT
GTTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCNAAGGCATTGT
TCTTGTTTAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACT
GAAGGTGTTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCATCGA
ATGGCTGGATCCTTATGTGCATGGACCTGGTATCTACTTCTTCCCTTTGG
TGGATTCATTAACCAGATTGCTGGGTTATGAGCGTGGAAAAACTTTACGA
TCTGCTCCGTATGACTTCCGCTACCATCCTGGAGATGCTGGTGATTATTT
TGATCGtttgaagaagttgattgaAGAGACGTACATGATGAATGGAGAGA
AGAAGATTATGTTGCTTTCTCATAGCATGGGTGTTCCTTACTCCCTCAAC
TTTCTTCATCGACAAACTGAAGaatggaaagaaaaatatatcgTGGCATG
GACCACTATTTCTGGTGTATTCGGAGGTTCTATGAAAGCTGTGAAAGCGT
TCATATCTGGTGATGGATTTGGTATTCCCAAAGTGCTTGATTATCCAATC
ACATTGCGAGCTTTTCAACGAACATTCAGTAGTTTACCTTACATCCTTCC
TGATGAAAGTTTTTGGGCCAAGGATGAGGTAATCGTCAAAACGTCGAATC
GGACATACACAGTACACCAATACGACGACCTCTTCAAAGACATGGGTTAT
CCGCTAGCAAGTAAAATCTATGCAAAGACTCCTAAAGCGTGGTCAGAAAA
ACCTCCTAACgtcaaaatgttttgttttcacgGGAGTGGTAAGGACACTC
CCGGTGTTTTGAATTACCGAGAAGGATATTTTCCGAATTACACACCGGAC
ATAACAATTGATGATGGGGATGGGACGGTGAACTTGCGGAGTCTTCAAGC
GTGTCAGTTGTGGagggaaaaacaaaaacaaccaaTAATTTATGAAGAAT
TTTCTAGAGGTGAGCATAATGGTGTTTTGGGTGACGCTCGGCTCATCAGG
TCCATCATTAAAGCTCTTAGTGAAGATTGATAGTCTCATATCTTTAATAC
ATTTGTGTAAATTCATTTTAATCTATATACCGTACTTCactattatttta
acattttttgttgtttagtATTTAAAACATGTAGTATATTTTTAGTCAGT
ATTGTCTACtttttgaaaacgttttaaATGGACGGACCATTGTG Run BLAST on NCBI transcript from alignment at sc0000018:811203..814052+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002070 ID=TCONS_00002070|Name=TCONS_00002070|organism=Clytia hemisphaerica|type=transcript|length=2850bp|location=Sequence derived from alignment at sc0000018:811203..814052+ (Clytia hemisphaerica)
TTAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACTGAAGGT
GTTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCNAAGGCATTGT
TCTTGTTTAGGCTGACTTACAACGAGAAGGAAGATCGAATGGAAAATACT
GAAGGTGTTTTCACCAGAATTCCTGGGTTTGGAAACACATCTGGCATCGA
ATGGCTGGATCCTTATGTGCATGGACCTGGTATCTACTTCTTCCCTTTGG
TGGATTCATTAACCAGATTGCTGGGTTATGAGCGTGGAAAAACTTTACGA
TCTGCTCCGTATGACTTCCGCTACCATCCTGGTAAGATGTTATTCATTTA
CTTCATCTTTTCTTCTAGTTGGGAttttttaatggattttttGTATGTGA
CTGTATGGTTTATTATGAGtgtcaattttcttgaaaatcatTGTTACATG
ATGATACATCAAATCGGCGACcattaaattgttttaaaagaattttgtaT
AAGGCTTATTTTGATATGACATTTAGATAgcaataagaaaatttgaaatt
cgaaaTCTTTCAGGAGATGCTGGTGATTATTTTGATCGtttgaagaagtt
gattgaAGAGACGTACATGATGAATGGAGAGAAGAAGATTATGTTGCTTT
CTCATAGCATGGGTGTTCCTTACTCCCTCAACTTTCTTCATCGACAAACT
GAAGaatggaaagaaaaatatatcgTGGCATGGACCACTATTTCTGGTAT
GAACAGTTCCACTTTTATTTGATGTTCGCcacttttatttgaaatattga
aagttCTTTCGTCTCAGACGTATTGTAAATAGGCTTTTCTAAAGCTTCAA
GAATGTGCTAATTTGTTGTgtaaaaattttgctttgatcactgtattcat
gatatgcaccattgcaatgtcatccgttccacccaatagctgattggttg
aaagtgacgtattgactgcttttacgtcacttccaaccaatgagctattg
gttccatgacgtaatgtcagaagacattgcactggtgcatatcatgaata
tcatgttCATTCATAAACAAAAACAGATGAACTTATTCGTTACAGTGGCT
TCTAGCTATTATAAAGATTGGCTCATACTCTTCTGCTTATTTCTTCCTCG
TCTTGGTGGTCCAGGTCTTAAACATGATGACATCATAACCTTTCCCACGT
GGCATTAGTGTATTACAAAGAGGATATTATTTTAGTGTTGAAGAAGGATT
AACCTCGAATTTTGTTGGATCTAACCGCATGCAATGTAGCTTCCTCAAAT
TTTGTAATgtaatctattcatgatatacacaattgcaatgtcttctgaca
ttacatcacggacccaattagctgattggttgtaagtgacgtaaaatcag
tcaatacgtcaccttcaaccaatcagctgttgggtccgtggaagacattg
caatggtgcatatcatgaattcagcTTGCCTTCTCGCACATGCgtggtcg
ttacttgaccttgGGTAATATTTCTCAATACACCCCTCACTAactggtca
ttattgtattagtgtATATTCTTTTTAGGTGTATTCGGAGGTTCTATGAA
AGCTGTGAAAGCGTTCATATCTGGTGATGGATTTGGTATTCCCAAAGTGC
TTGATTATCCAATCACATTGCGAGCTTTTCAACGAACATTCAGTAGTTTA
CCTTACATCCTTCCTGATGAAAGTTTTTGGGCCAAGGATGAGGTGTGTAT
AGTCTTTATGCCAATAGAAATTTCAGACGGTCTTTGATTTTCACTGCTGC
AAAAGAATTTACATAATTCTACTGAGCAGTCTTTGAGCTTTCTTATTTGT
AGCTTTTCGGCACATCATTTCACTAGAGCACTGAATTATTCGAAGTGATA
TACATCAAGTATTAATTTGCTTAGTACGACTCATTTTGTAAAAGATAGCG
AGGTTAATTATTGATAGATATTTTGCGACGACGAATTTAGTTTCCCCTAA
GCCTTCATTTATGCTATTTTGTACAGTTTATCCCAAAAAGAAGATAGACT
TGCCCTAAAAATCAACTTTGGTGCTAGAGCGAATTTCCgctttatttttc
gttttcaaagCAAAGTGTGTAGACTACGTGAGGAAAGTCTACTTTGCTTT
CCTACTTACCGCGAACGAAGGGCATATGAAGCCCGTTCGTCGTCGCGAAA
TATCTACCGATACTATTATGTATCACTATATGTCTTTCTCACAGATTATC
TTTTTCCCTAACAATCTTTCGTACTTTCATCCAGGTAATCGTCAAAACGT
CGAATCGGACATACACAGTACACCAATACGACGACCTCTTCAAAGACATG
GGTTATCCGCTAGCAAGTAAAATCTATGCAAAGACTCCTAAAGCGTGGTC
AGAAAAACCTCCTAACgtcaaaatgttttgttttcacgGGAGTGGTAAGG
ACACTCCCGGTGTTTTGAATTACCGAGAAGGATATTTTCCGAATTACACA
CCGGACATAACAATTGATGATGGGGATGGGACGGTGAACTTGCGGAGTCT
TCAAGCGTGTCAGTTGTGGagggaaaaacaaaaacaaccaaTAATTTATG
AAGAATTTTCTAGAGGTGAGCATAATGGTGTTTTGGGTGACGCTCGGCTC
ATCAGGTCCATCATTAAAGCTCTTAGTGAAGATTGATAGTCTCATATCTT
TAATACATTTGTGTAAATTCATTTTAATCTATATACCGTACTTCactatt
attttaacattttttgttgtttagtATTTAAAACATGTAGTATATTTTTA
GTCAGTATTGTCTACtttttgaaaacgttttaaATGGACGGACCATTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002070-exon-sc0000018-1491911889:811203..811533 | TCONS_00002070-exon-sc0000018-1491911889:811203..811533 | Clytia hemisphaerica | exon |
| TCONS_00002070-exon-sc0000018-1510915933:811203..811533 | TCONS_00002070-exon-sc0000018-1510915933:811203..811533 | Clytia hemisphaerica | exon |
| TCONS_00002070-exon-sc0000018-1575043694:811203..811533 | TCONS_00002070-exon-sc0000018-1575043694:811203..811533 | Clytia hemisphaerica | exon |
| TCONS_00002070-exon-sc0000018-1491911889:811766..811948 | TCONS_00002070-exon-sc0000018-1491911889:811766..811948 | Clytia hemisphaerica | exon |
| TCONS_00002070-exon-sc0000018-1510915933:811766..811948 | TCONS_00002070-exon-sc0000018-1510915933:811766..811948 | Clytia hemisphaerica | exon |
| TCONS_00002070-exon-sc0000018-1575043694:811766..811948 | TCONS_00002070-exon-sc0000018-1575043694:811766..811948 | Clytia hemisphaerica | exon |
| TCONS_00002070-exon-sc0000018-1491911889:812781..812944 | TCONS_00002070-exon-sc0000018-1491911889:812781..812944 | Clytia hemisphaerica | exon |
| TCONS_00002070-exon-sc0000018-1510915933:812781..812944 | TCONS_00002070-exon-sc0000018-1510915933:812781..812944 | Clytia hemisphaerica | exon |
| TCONS_00002070-exon-sc0000018-1575043694:812781..812944 | TCONS_00002070-exon-sc0000018-1575043694:812781..812944 | Clytia hemisphaerica | exon |
| TCONS_00002070-exon-sc0000018-1491911889:813487..814052 | TCONS_00002070-exon-sc0000018-1491911889:813487..814052 | Clytia hemisphaerica | exon |
| TCONS_00002070-exon-sc0000018-1510915933:813487..814052 | TCONS_00002070-exon-sc0000018-1510915933:813487..814052 | Clytia hemisphaerica | exon |
| TCONS_00002070-exon-sc0000018-1575043694:813487..814052 | TCONS_00002070-exon-sc0000018-1575043694:813487..814052 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:811203..814052 + |
Blast
BLAST of TCONS_00002070 vs. Swiss-Prot (Human)
Match: PAG15 (Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G15 PE=1 SV=2) HSP 1 Score: 195.282 bits (495), Expect = 5.659e-57 Identity = 117/322 (36.34%), Postives = 179/322 (55.59%), Query Frame = 1
Query: 106 FRLTYNEKEDRMENTEGVFTRIPGFGNTSGIEWLDPYVHGPGIYFFPLVDSLTRLLGYERGKTLRSAPYDFRYHPGDAGDYFDRLKKLIEETYMMNGEKKIMLLSHSMGVPYSLNFLHRQTEEWKEKYIVAWTTISGVFGGSMKAVKAFISGDGFGIPKVLDYPITLRAFQRTFSSLPYILPDESFWAKDEVIVKTSNRTYTVHQYDDLFKDMGYPLASKIYAKTPK-AWSEKPPNVKMFCFHGSGKDTPGVLNYREGYFPNYTPXXXXXXXXXXVNLRSLQACQLWREKQKQPIIYEEFSRGEHNGVLGDARLIRSIIKAL 1068
RL YN+ + +GV R+PGFG T +E+LDP G YF +V+SL GY RG+ +R APYD+R P + G YF L+++IEE Y + G ++L++HSMG Y+L FL RQ + WK+KYI A+ ++ +GG K ++ SGD IP + P+ +R QR+ S ++LP W+ ++V V+T YT+ Y F+D+G+ + T + PP V++ C +G+G TP Y FP+ P I DGDGTVNL+S CQ W+ +Q+ ++ +E EH +L +A + + + L
Sbjct: 94 IRLVYNKTSRATQFPDGVDVRVPGFGKTFSLEFLDPSKSSVGSYFHTMVESLVGW-GYTRGEDVRGAPYDWRRAPNENGPYFLALREMIEEMYQLYG-GPVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVLASGDNNRIPVI--GPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQDIGFEDGWLMRQDTEGLVEATMPPGVQLHCLYGTGVPTPDSFYYES--FPDRDPKICFGDGDGTVNLKSALQCQAWQSRQEHQVLLQELPGSEHIEMLANATTLAYLKRVL 409
The following BLAST results are available for this feature:
|
