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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021831 ID=TCONS_00021831|Name=TCONS_00021831|organism=Clytia hemisphaerica|type=transcript|length=1838bp
TTTATTAAAGCTTGAATCTATGAATATGAATTGAATAAGGCGATGTATCC
CAGTTTTCTTGTCGTGACTCCCGGtagtattttttctttgtttttagctT
CTTATCTTGAGATCTGACATAAGTGTAAGGATTTggttttggaaattttc
atctacAATATACAGTATGTTTTGGTGCTGACGATTCAACCAACTAAGTA
CACATTCATCAAATTAACTTTACTGTGCCACGTTCATCAAATTCTTTTAT
AAGAGATAGTTACGAATTCTTAAAGGCGTTCTTTAAAAGGaatatttgat
gacgtcacaaaataaatCGTTGTGTCTATTCTTACGATAAAGCATTGTCG
GAAATTTTTCGACACTGAGTCACTACCATTTCGTTACTAAGGTAAAGTTA
CTGGATAATATTATGACAGATTGTTGCTAAGGAGATAATTACATCATTTA
AACTATGTTCATCAAAAATATACGATCAAAAGATTGACAATTCCCAAGTG
TAAAAAGATAATTAAGGGTTAATTAAAAAACTTATGCAAGTTCTAATTGC
TCTTTTTGCgacaaattttaatgaaaagtaGAGCTATTTCGAAAAAGCAG
CGAAGAGAGCTCTGTGTGGAAATCAGACTCATGTAAGAGTACTTCCAGTA
AATTAGAATTAACATCGAAGGGAGGATAAGAAAAGTATGCAGTGTactgc
aaaatatcaaaaaggtatattatatttttgtcatccttttttttttaaat
ccttttactacatttttaattttcaattttaatccAATAAATTGGACTCA
CAATTTGTGTTGGTAATAGATTTGATCAAGAAATAGGTAGGTTAATAAAG
TGGAATGAATCGAGATACACAATTAGTTTTCGACATTGACATTTTATTCA
ATGTTGATGATTTTGATCTCAGTTTGGTTAGCTATTTAGATTAGGTTGTG
CTAATAAACACAAAAAGGGAATCGATTTATTTTCCTATGAACTTAATTGC
GAAATGGgataagaattttttcaaaaaccaaaaattacaGTTCAAAACAA
TGTTGAAAGTAGACGCTAAAACAGAGtttttattattcttataaacgCGG
TTTCGTAACGGCTAGTTAGTATTTGCATGCCAGAAATAGAATTGGTCACG
TGATTAGAGATTCTAAAGCGCCTTAAATGCCGACCAGGTTGTCCCATTGA
ATGTTTATTTGACAATTTTGTTTAGTCTGTTTCAGTGTTTATATGTTAAT
GGTTGCCAATAGTAACTAAGAATTAGGGCTTGGGTAATCAGAACAGGGAA
GTCTTAATTTTCCATGTTTTGGGAATCAAAAAGGTTTTCAAGAAAGTAAT
TTAAGGGAAAGATGGCTGAAGAAGAAGTTGcttacgctttttttataaga
acaaactatataagaacataaggtttcggtAGCCGAAATCTTAGATCAAG
TTAAggatattttaaggctttgggggcTCAAAACAactgttttcttagga
aaatggacaaacatactcaagaaatgctgaaaataagaacttgttaagaa
catttttaagcttgacacccaaaaagataagaaaatgTGAGACTTTCTCT
CCATCTCATGTTGTGCAAAATAAGGGAAGAACTTGCTTcatatattttta
gatatttggTCCAAAATTTCGATATGAACTGTGTTTTTAATGTgggaaat
gaaattaaaacctCTTCAAACCACTGTTGGGAACAGtttcataatatttt
tcttctttacgtTTGTTCTTCGCTTTGGAGATTTACTTacttttctataa
gaataaGAATTTTTCATGTTACGTAAATTATTTCGAAA Run BLAST on NCBI transcript from alignment at sc0000395:146406..148243- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021831 ID=TCONS_00021831|Name=TCONS_00021831|organism=Clytia hemisphaerica|type=transcript|length=1838bp|location=Sequence derived from alignment at sc0000395:146406..148243- (Clytia hemisphaerica)
TTTATTAAAGCTTGAATCTATGAATATGAATTGAATAAGGCGATGTATCC
CAGTTTTCTTGTCGTGACTCCCGGTAGTATTTTTTCTTTGTTTTTAGCTT
CTTATCTTGAGATCTGACATAAGTGTAAGGATTTGGTTTTGGAAATTTTC
ATCTACAATATACAGTATGTTTTGGTGCTGACGATTCAACCAACTAAGTA
CACATTCATCAAATTAACTTTACTGTGCCACGTTCATCAAATTCTTTTAT
AAGAGATAGTTACGAATTCTTAAAGGCGTTCTTTAAAAGGAATATTTGAT
GACGTCACAAAATAAATCGTTGTGTCTATTCTTACGATAAAGCATTGTCG
GAAATTTTTCGACACTGAGTCACTACCATTTCGTTACTAAGGTAAAGTTA
CTGGATAATATTATGACAGATTGTTGCTAAGGAGATAATTACATCATTTA
AACTATGTTCATCAAAAATATACGATCAAAAGATTGACAATTCCCAAGTG
TAAAAAGATAATTAAGGGTTAATTAAAAAACTTATGCAAGTTCTAATTGC
TCTTTTTGCGACAAATTTTAATGAAAAGTAGAGCTATTTCGAAAAAGCAG
CGAAGAGAGCTCTGTGTGGAAATCAGACTCATGTAAGAGTACTTCCAGTA
AATTAGAATTAACATCGAAGGGAGGATAAGAAAAGTATGCAGTGTACTGC
AAAATATCAAAAAGGTATATTATATTTTTGTCATCCTTTTTTTTTTAAAT
CCTTTTACTACATTTTTAATTTTCAATTTTAATCCAATAAATTGGACTCA
CAATTTGTGTTGGTAATAGATTTGATCAAGAAATAGGTAGGTTAATAAAG
TGGAATGAATCGAGATACACAATTAGTTTTCGACATTGACATTTTATTCA
ATGTTGATGATTTTGATCTCAGTTTGGTTAGCTATTTAGATTAGGTTGTG
CTAATAAACACAAAAAGGGAATCGATTTATTTTCCTATGAACTTAATTGC
GAAATGGGATAAGAATTTTTTCAAAAACCAAAAATTACAGTTCAAAACAA
TGTTGAAAGTAGACGCTAAAACAGAGTTTTTATTATTCTTATAAACGCGG
TTTCGTAACGGCTAGTTAGTATTTGCATGCCAGAAATAGAATTGGTCACG
TGATTAGAGATTCTAAAGCGCCTTAAATGCCGACCAGGTTGTCCCATTGA
ATGTTTATTTGACAATTTTGTTTAGTCTGTTTCAGTGTTTATATGTTAAT
GGTTGCCAATAGTAACTAAGAATTAGGGCTTGGGTAATCAGAACAGGGAA
GTCTTAATTTTCCATGTTTTGGGAATCAAAAAGGTTTTCAAGAAAGTAAT
TTAAGGGAAAGATGGCTGAAGAAGAAGTTGCTTACGCTTTTTTTATAAGA
ACAAACTATATAAGAACATAAGGTTTCGGTAGCCGAAATCTTAGATCAAG
TTAAGGATATTTTAAGGCTTTGGGGGCTCAAAACAACTGTTTTCTTAGGA
AAATGGACAAACATACTCAAGAAATGCTGAAAATAAGAACTTGTTAAGAA
CATTTTTAAGCTTGACACCCAAAAAGATAAGAAAATGTGAGACTTTCTCT
CCATCTCATGTTGTGCAAAATAAGGGAAGAACTTGCTTCATATATTTTTA
GATATTTGGTCCAAAATTTCGATATGAACTGTGTTTTTAATGTGGGAAAT
GAAATTAAAACCTCTTCAAACCACTGTTGGGAACAGTTTCATAATATTTT
TCTTCTTTACGTTTGTTCTTCGCTTTGGAGATTTACTTACTTTTCTATAA
GAATAAGAATTTTTCATGTTACGTAAATTATTTCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021831-exon-sc0000395-1575043694:146406..148243 | TCONS_00021831-exon-sc0000395-1575043694:146406..148243 | Clytia hemisphaerica | exon |
| TCONS_00021831-exon-sc0000395-1510915933:146406..148243 | TCONS_00021831-exon-sc0000395-1510915933:146406..148243 | Clytia hemisphaerica | exon |
| TCONS_00021831-exon-sc0000395-1491911889:146406..148243 | TCONS_00021831-exon-sc0000395-1491911889:146406..148243 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:146406..148243 - |
Blast
The following BLAST results are available for this feature:
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