TCONS_00021821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021821
Unique NameTCONS_00021821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021821 ID=TCONS_00021821|Name=TCONS_00021821|organism=Clytia hemisphaerica|type=transcript|length=1487bp
tgTCAAATCAAAAGCTCTTAGAGAGAACTTTTCTTTTACAAATTGAGCCC
AATTCCtttgaaatataataataaaactCTGTTTTCGCGGGGTTTAATTC
TTCCCAAATAGAGGAACTCGCTTTATCACAATCTTGTAAAGAAGTATTAT
TTCTTCTGTTTAATGGGTAACAGAGCTATATCGAATCATTTTAACTAtta
gttaaaaaaattaaaaataccgcAAGGTAGTGTACataaataaaaaccaa
aaaaaagtgCGAAATAAAAACAGTTTAAAGTTATAATTTAATTATACAAA
TCAATTAAGTGCTCATCATCATATCAATGTAATTATAAAAAGCAGCTACA
TCATTTTTAGCACTAGCATCGTTATTAGATAAGAAAATATCATTCAAAGA
GACGTTCATTTCTTTAAGAACTCCTTCACATTTCATTATCACTGACTCTC
CACTTAATTCCAAACCAACCACACTACCTTGTGTAGACAATTCACGAAAT
CTTTCCTTCTTAAAGATTCGTTCCACATCTTCAGGCTCCATTTTAATCTC
TTTCGTTTGGATAATACAATAGTCGGTGATCTTTGCCAACTCCTTTAAAA
ACTCCTTGCACTTAGATTTATTATTATCAAAGAACACAATCAAACAATTT
TGGTCAGACTTCACTGCTCGTTTTTGTTGTGTCAAAGGCACAACACTCAA
TTCAGACTCAAATTTGACATCAATGTCGGCGAATTCTTCACTAGTAGGGC
GAGGTACATGTTGCTCTAGGGTGACGCTTTGAGGGATCAACGACCAATTC
TCGGACTGTTCAACAGGAGTGAAATCATGAATAGTGCTCCACGTATTATT
GTATACTGAGAGGCCAGCCAATTTAAATTGCTCTTCTAGTTCAGGATAGT
AATACTGAAAGCAAGCAAATTTCATGCCGGTAGATGACTCGATGATCGGT
TGTGTTTGACAATACAAGAATGTTTCAATCTTTTGACAGTCACGTGATCG
GAATTGTTGACAAGCGATAGCACATCTCAAATTTTTACAATTCCGAATAA
AAACACTTCCTTTGATGGGCGCAATGAATATGGTGCAATTCTCACAACGA
TCAATGGTTACCATAGCACTATGATCGTAAATGTAAATAGAGCTATTCTT
GCAATTCTCTATGATAAACTGTTGGCCATTGATGGTGCCAGGTTTCCTAC
CACAAACAGTACCATCTTGTTCAGATATTGTGTAATCTTTAGGATCAGGT
CTATCATCTCGATCCCAGCTGAAGACAGGCTGTTTTGGTGGCTCTTCAAC
ACTTTCTGTTGAGGATAAACATCCCATATTGTTTTGTATGTTTATTACAG
TATTTTAGCAATTAtctaaatgaaagaaaaacaaattcaaaaaaatcaac
taACTGAGTATAACTAATAACAAATGATAGGTTCAGCACTGAGAATTGAG
CAAACCAGTGCAGAATTTATGAATCCATAATAAATAG
Run BLAST on NCBI

transcript from alignment at sc0000395:27266..28838-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021821 ID=TCONS_00021821|Name=TCONS_00021821|organism=Clytia hemisphaerica|type=transcript|length=1573bp|location=Sequence derived from alignment at sc0000395:27266..28838- (Clytia hemisphaerica)
TGTCAAATCAAAAGCTCTTAGAGAGAACTTTTCTTTTACAAATTGAGCCC
AATTCCTTTGAAATATAATAATAAAACTCTGTTTTCGCGGGGTTTAATTC
TTCCCAAATAGAGGAACTCGCTTTATCACAATCTTGTAAAGAAGTATTAT
TTCTTCTGTTTAATGGGTAACAGAGCTATATCGAATCATTTTAACTATTA
GTTAAAAAAATTAAAAATACCGCAAGGTAGTGTACATAAATAAAAACCAA
AAAAAAGTGCGAAATAAAAACAGTTTAAAGTTATAATTTAATTATACAAA
TCAATTAAGTGCTCATCATCATATCAATGTAATTATAAAAAGCAGCTACA
TCATTTTTAGCACTAGCATCGTTATTAGATAAGAAAATATCATTCAAAGA
GACGTTCATTTCTTTAAGAACTCCTTCACATTTCATTATCACTGACTCTC
CACTTAATTCCAAACCAACCACACTACCTTGTGTAGACAATTCACGAAAT
CTTTCCTTCTTAAAGATTCGTTCCACATCTTCAGGCTCCATTTTAATCTC
TTTCGTTTGGATAATACAATAGTCGGTGATCTTTGCCAACTCCTTTAAAA
ACTCCTTGCACTTAGATTTATTATTATCAAAGAACACAATCAAACAATTT
TGGTCAGACTTCACTGCTCGTTTTTGTTGTGTCAAAGGCACAACACTCAA
TTCAGACTCAAATTTGACATCAATGTCGGCGAATTCTTCACTAGTAGGGC
GAGGTACATGTTGCTCTAGGGTGACGCTTTGAGGGATCAACGACCAATTC
TCGGACTGTTCAACAGGAGTGAAATCATGAATAGTGCTCCACGTATTATT
GTATACTGAGAGGCCAGCCAATTTAAATTGCTCTTCTAGTTCAGGATAGT
AATACTGAAAGCAAGCAAATTTCATGCCGGTAGATGACTCGATGATCGGT
TGTGTTTGACAATACAAGAATGTTTCAATCTTTTGACAGTCACGTGATCG
GAATTGTTGACAAGCGATAGCACATCTCAAATTTTTACAATTCCGAATAA
AAACACTTCCTTTGATGGGCGCAATGAATATGGTGCAATTCTCACAACGA
TCAATGGTTACCATAGCACTATGATCGTAAATGTAAATAGAGCTATTCTT
GCAATTCTCTATGATAAACTGTTGGCCATTGATGGTGCCAGGTTTCCTAC
CACAAACAGTACCATCTTGTTCAGATATTGTGTAATCTTTAGGATCAGGT
CTATCATCTCGATCCCAGCTGAAGACAGGCTGTTTTGGTGGCTCTTCAAC
ACTTTCTGTTGAGGATAAACATCCCATNGATCAGGTCTATCATCTCGATC
CCAGCTGAAGACAGGCTGTTTTGGTGGCTCTTCAACACTTTCTTTGGAGG
ATAAACATCCCATATTGTTTTGTATGTTTATTACAGTATTTTAGCAATTA
TCTAAATGAAAGAAAAACAAATTCAAAAAAATCAACTAACTGAGTATAAC
TAATAACAAATGATAGGTTCAGCACTGAGAATTGAGCAAACCAGTGCAGA
ATTTATGAATCCATAATAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012246XLOC_012246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021821-exon-sc0000395-1575043694:27519..28838TCONS_00021821-exon-sc0000395-1575043694:27519..28838Clytia hemisphaericaexon
TCONS_00021821-exon-sc0000395-1575043694:27266..27432TCONS_00021821-exon-sc0000395-1575043694:27266..27432Clytia hemisphaericaexon
TCONS_00021821-exon-sc0000395-1510915933:27519..28838TCONS_00021821-exon-sc0000395-1510915933:27519..28838Clytia hemisphaericaexon
TCONS_00021821-exon-sc0000395-1510915933:27266..27432TCONS_00021821-exon-sc0000395-1510915933:27266..27432Clytia hemisphaericaexon
TCONS_00021821-exon-sc0000395-1491911889:27519..28838TCONS_00021821-exon-sc0000395-1491911889:27519..28838Clytia hemisphaericaexon
TCONS_00021821-exon-sc0000395-1491911889:27266..27432TCONS_00021821-exon-sc0000395-1491911889:27266..27432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000395supercontigsc0000395:27266..28838 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	72.1262	48.7851	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006599CARP_motif
IPR012945Tubulin-bd_cofactor_C_dom
IPR034907NDK-like_dom
IPR017901C-CAP_CF_C-like
IPR013912Adenylate_cyclase-assoc_CAP_C
Vocabulary: Biological Process
TermDefinition
GO:0007010cytoskeleton organization
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007010 cytoskeleton organization
molecular_function GO:0003779 actin binding
Blast
[Close]
BLAST of TCONS_00021821 vs. Swiss-Prot (Human)
Match: XRP2 (Protein XRP2 OS=Homo sapiens GN=RP2 PE=1 SV=4)

HSP 1 Score: 335.88 bits (860), Expect = 1.101e-110
Identity = 161/353 (45.61%), Postives = 234/353 (66.29%), Query Frame = -2 
Query:  311 MGCL----------SSTESVEEPPKQPVFSWDRDDRPDPKDYTISEQDGTVCGRKPGTINGQQFIIENCKNSSIYIYDHSAMVTIDRCENCTIFIAPIKGSVFIRNCKNLRCAIACQQFRSRDCQKIETFLYCQTQPIIESSTGMKFACFQYYYPELEEQFKLAGLSVYNNTWSTIHDFTPVEQSENWSLIPQSVTLEQHVPRPTSEEFADIDVKFESELSVVPLTQQKRAVKSDQNCLIVFF--DNNKSKCKEFLKELAKITDYCIIQTKEIKMEPEDVERIFKKER--FRELSTQGSVVGLELSGESVIMKCEGVLKEMNVSLNDIFLSNNDASAKNDVAAFYNYIDMMMS 1327
            MGC           S  E+ EE PKQ  +SWD+ ++ DPKDY  S       GR PGT+ GQQF+I++C+N +IYI+DHSA VTID C NC IF+ P+KGSVF RNC++ +C +ACQQFR RDC+K+E FL C TQPIIESS+ +KF CFQ+YYPEL  QFK AGLS++NNTWS IHDFTPV    NWSL+P+   ++ +VP PT+EE   + V  E+  S+VP+++ +R   SD++CL+V F  D   +  ++ + E+     + ++QTKE+ M+ ED +R+F+++   F  L  +G V+ LE +G+  +  C+ ++ E+  +   +F+S +  +A  DV +FYN+ D+ M 
Sbjct:    1 MGCFFSKRRKADKESRPENEEERPKQ--YSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEMVG-KGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEI-FNGTKMFVSESKETASGDVDSFYNFADIQMG 349
The following BLAST results are available for this feature:
BLAST of TCONS_00021821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XRP21.101e-11045.61Protein XRP2 OS=Homo sapiens GN=RP2 PE=1 SV=4[more]
back to top