TCONS_00002050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002050
Unique NameTCONS_00002050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002050 ID=TCONS_00002050|Name=TCONS_00002050|organism=Clytia hemisphaerica|type=transcript|length=1269bp
TNTTGATATCACTGGTGAACCTGAGttTATGCAGACATGTCAAATTAAAT
ATCACAAAGCTGCTGAAGAGAAAGGTGTTCACATTGTCAGCGCTTGTGGA
TTTGATAGTATCCCTGCTGATATGGGTCTGGAAATTCTTCGAGAAAGATT
CCCAGGTGTTTTAACAGCAGCAGAGAGTTACATCCACATCAGATCTAAAA
GAGCTAATTATGGAACATATTTGACCATTATCCACAGTGTCCAAAATCGC
AATTCAGTAAAAGATCAACACAAAACCATCTTCAGACAGAAAATACCTTA
CACCGGACCAAGACTTCGTTTGAGAAATGGTGGATTCAGCAACTCTGAGA
ATCGTTGGTTCATTCCTTTCCTTGGTGCAGACCCCTCAGTTGTCAAGAGA
ACTCAATATCATGAATCGATGGTTCACGACCGAATGCCAGTCCAATATTT
CGCTTATTTCACAGTACCGtcaatcttttacatgatctgTTTTGCTATCT
TTGGAGTTGTTTTGTTTGTGTTGACCAAATTTTCTTTTGGTATCAAATTG
TTGGAAAACCATCCAAAATTCTTCACTTTTGGTACGTTTTGCAAAGAAGG
ACCAACAAGGAAGGAGATTGATGCGGGaagtttcaaaattgtttttcatG
GAAAAGGCTACAAGAAAGAACCTGAATCAAGGACAAGTGCAGGAAGACCT
GATCAAAGCATGTCATTGAAGTTCTCTGGACCAGagGCAGGATACATTTT
CACTTCAACGTGCGTCGTCGCAGCTGCTGCTACCATTTTAGATGACAACC
TCATCAACAAGGGTGGTGTTTTGACTCCTGCTTCAGCTTTCCGAAAGACC
AAATTTGTTGAACGATTGGAAAAACGAAACGTCAAAATTGAAGTGATGAA
TTAAAAGAGATTTGGGGCCCAAGTGGAAAATCAATACTAAAGCCTATACT
AAGGCCTATGTGGTACTCCTATTTCTTCTGCattaaaaagtatttaaaat
gattttgatatttAGTTTGTTTCTTGCAATTTTAGAATTTAGACCTTTGT
TTTTCAATGCAGCTCGTTTTATACTGCATTATCTTgaagttaattaaaaa
aaaaggtttttgtagggataatttataatttgaaatgatttttaatTACG
TGCGTTCGTACAGATTTGATTATGTATAGTTTTTGTCAATATCAAAATAC
AGTATTTTCTAGCATTCACATTTTATACAGGTAAATCTCAGACCAAATAT
ATCAACTTTTACAAATCCG
Run BLAST on NCBI

transcript from alignment at sc0000018:578858..590893+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002050 ID=TCONS_00002050|Name=TCONS_00002050|organism=Clytia hemisphaerica|type=transcript|length=12036bp|location=Sequence derived from alignment at sc0000018:578858..590893+ (Clytia hemisphaerica)
TNTTGATATCACTGGTGAACCTGAGGTTAGTACAATGTAAACAAATGTTT
AAAATCTTTGCATATAatctttataaataaataatagcTAGGactttttc
ccaatttttgatATAGGTAGAAAGTTAGGCTAGCACTTTTCAAAATAGTA
CAATTGaatgttttttctttaataaaGTAATAATGATAATCACGATAATT
TTCCTGAAAAGTTTCCAAGGTAAATCTGTTTTTTAATCCCTTACCAATTA
AACTAGTTGGGATGATTTTCATTTGGTAAAGAAagaacaaatattttgaa
aaggaaaaagagagaaaaattctAAGCAATCATgctgcttttcttttttt
ccagttTATGCAGACATGTCAAATTAAATATCACAAAGCTGCTGAAGAGA
AAGGTGTTCACATTGTCAGCGCTTGTGGATTTGATAGTATCCCTGCTGAT
ATGGGTCTGGAAATTCTTCGAGAAAGATTCCCAGGTACCCCTGTGATTTG
TTTTGCTCTCCCTCTCTCAGTACTCCATTTTTTTCAATCATAGggcaata
ttatctcttttcaTCCTGTTTCGTATAGACCTACCTAAAGCTCAAATGAA
TTAGCTAATTAATGTTTTAGCAATTAGCATTTTATTGAGATTGGTTTGGT
ATGGGCTCGTTATATAATAGCATTatctttgattttgttttaagGTGTTT
TAACAGCAGCAGAGAGTTACATCCACATCAGATCTAAAAGAGTAAGAATA
GCTCACTTCCAAAGATAATCTTCACTCAGTTGTTTTCAATTTATTGGAAG
CCACGTGTTTcagtatttttgtaaaatctttaattttaaggAGTGAATAC
ATTCAATAGCAATAATCTCGAAAATAAATCGTTTTTAGGCTAATTATGGA
ACATATTTGACCATTATCCACAGTGTCCAAAATCGCAATTCAGTAAAAGA
TCAACACAAAACCATCTTCAGACAGAAAATACCTTACACCGGACCAAGAC
TTCGTTTGAGGTATACCCTAGCAATATATTTTGATAGAAGTCCATAGTTC
ATATTGATTATAATAACAATCATCGTGGTGTCTACGgcaccttgaaaacc
ttgaaaaccttgaaattggactaagcaaccttgaaaaccttgaaattgtA
ATAATGTgaaagaattctttgaaaaccttgaaaaagcaTGATTGTGACAG
TATAGTAGTCTTGTTTTGGATTGGGTCCTCACTGAAGTTTTGGCTAATGC
TAAAGCTCCAAAAAGTTTCTTGCTCGCATTGCTCACAATCATTTTTTATG
GACCAAATGCTGGTAATAGCATCTCACGCACCTCGTCAAGTATGGTGATA
TCGTACTATTTAAATCAGTTTGAGTtctgaaaaaccttgaaaataccCAA
TAaatagtccaaaaaaccttgaaaaaaatcgctaaaatattgccataaaa
accttgaaaaccttgaaaatcatGGAAAAATGTCCGTAGACCATTTGGCC
ATTCCATTGTATATCCATACAGGgcgtggacgaacatttccagagggtaa
tccaagaaaattttccagtgggtgttttatttttccaagggggtaaaaag
ttattctaaaatttccagggcgTAAAAGACTaatttagttcgtccaccct
cactttaaggtatgaaaagaatttttccgcTGGGGGTAActacacatttt
caataattctttTCGACTTGAAAAAGTTCGTCCACCCCTGTATGTTTTTT
TATTAATGGAACAACCCATTATTTAGTAATAGGTATATCAAAAAAGACCT
TTAAAGGTTCTCAGCTTCTTAACTTGTATTAGTGTATGTTACCATTAATT
CTAATTAAACTtatttatttgttgtttttttattctagAAATGGTGGATT
CAGCAACTCTGAGAATCGTTGGTTCATTCCTTTCCTTGGTGCAGACCCCT
CAGTTGTCAAGAGAACTCAATATCATGAATCGATGGTTCACGACCGAATG
CCAGTCCAATATTTCGCTTATTTCACAGTACCGtcaatcttttacatgat
ctgTTTTGCTATCTTTGGAGTTGTTTTGTTTGTGTTGACCAAATTTTCTT
TTGGTATCAAATTGTTGGAAAACGTAAGATATTGTGTAAACTTGTATTGT
GTAAACTATATTTCGGTGACTTTACTTTTTAaggaaatttagttttttta
aagactcttatgtatggaatgcttttaaatttttttcgattttttattcA
AGACACGATAAAATTCAGAATAAGAGAAAAGCTTGAATTATCTTATGAAA
TACTCAAGTTTTATAATGGAATTTGATTTTTACTTGTGGTTGTTGATTTT
AGCATCCAAAATTCTTCACTTTTGGTACGTTTTGCAAAGAAGGACCAACA
AGGAAGGAGGTATAATAATGATgagtcaaaactttttttaaaatgtagaa
cttaaagtttcatgcttacaatcatcagctacataTGATACAAGTTTGAT
ctaattgaaaaaattcaaaattcaaacattGCTAGAATCGACAAGTCGTA
AAAAATTAATAAgtaattagaaaaaatataaaataaaattataattcCCA
TGTGAGCAGCTATGTCCAGTCTTTTGTTTTATAATGTTTGAACATAAATT
TATTCATGTGACGACATTTAGAAACGATTTCGGATCTTTTGTTAAGCAAT
TCGTCTTTGTTTTCGAATCTCaggatttctaatttttcctgTAAACAAAG
GCGGCACATTTTAGAAGTGTTAGAGTAGGATTTGACCCGTTTTTGGATGG
ACCATTTTAACGTCGGGAcaatattcttttcttttaaggCCCAAATATAC
GTAGACAGGGTTGTACTGTTTTTGTACTTAGCGTTGTTGATAGATTGCTT
GTGTTCATTATATCGCTGCTTGAATTCTCTTTTGGTAAGGCCGATGTATG
ATTTCTTATCATGATTAGGTGCTGTAACTTCGCATTTATATACAATGGAT
TTGGTTTTGCATTTGTTTTGTAACGGACATGCATTTTTATTACGACAGTT
GCAATGTTGGTCGTTGTCTTCAGGTTTCAATAACATCTTTTTATTGTGAG
AGTTTATAATAGAACGGACGTTTTCGGTACAAGAGTAGCTCACTTTGaca
ttgtttttgttgaaaactgAATATAGTTTGTTTgcttttgtaaaatgttt
atCAATGAGTTTTAGGAAGGTTTTTCCTACATTTGTTGAGACGTTTTTGT
TGTACGGGGGGTTGAACCATATAACTTTTCGCTTTCTTGATCGACGGTTT
TCTGTATTTTGGTAGGTATTTTCATATGATAAGTTGATGTTTTTGTAACC
ACTTGCTTTTAAAGCTTCTTCGTAGATAGGTTTGGCTTGATTGAAAATAG
TTTCATTTgaggagttttttgaaagtctcttgtTTATGGAAAGTGGCAGT
TGCTTTATAATATTTTGAGGATGGTTTGAAGATGTGTTTACATATGAAAG
GGTATTATTCGGTTTTTTGAACGGTCGGTAAGTACCTGTGTTTAGATCAA
GTGTCAAATCGAGAAAATCAACGGTTTTCAAGTTAATATCGATTTCAATG
TCAAATcctatgtttttgaaaattgaggGATTGTGCGAGGGCCCGGAGGG
CCCGAAGGGCAATCCcgattttatgaataaaatcgAAGCCAACGATCTGA
TGTGGGTACGCCCTACTCGCCGTCATGACTGAAGGTCATAATTTCAACTA
AGGGTATAAAGATGTACAGTACTAACAAAAGAATTAATTAAACAAAATAT
GGGATAGAAATAAAGTGAAACAAGCTTCGATTGGTTTTAAGGTTTCTTTG
CCAGGACCACAGTTGACTGGCTTAAAGAgctattaaaaaaatgttacaaT
GTTTAAAATGATTAACCACTGCCTCGTCCACGGCCACGTCCACGAAAGTT
GGTTCCTGAAATGTACAAGCAAGATAAAGAATATATATGAGACAGGGAGG
AGAGGGAGGGCACATCAGATCGTTGGCTTcgattttattcataaaatcgG
GATTGCCCTTCGGGCCCTCCGGGCCCTCGCACAATCCCTCATTTCATTTC
ATAAAATCTCCGCCCGATCTGATGTGGGTACGCCCTACTCTTGTATGACT
GAAGGTCATAATTTCAACTACCTCTGTTTGAAGCTTTTTAAAATCGCACC
TTGGAACGAATCTTTAATTACACTCCCTGAATTAttataaaacttttgaa
aagtacTTTTATTCGACCAGTGGGCAGATTTCATAATATCCTCCACCGAA
AAACCATTCAAAGAAGCCTTTGAGGTAGAGGCCGACCTAGTAGAGTGGCC
ctgaaaaacttttgaatcaATGCCTGCATTATGGATGACTTCTTTTAACC
ATCTAGAAACAGTAGATGTAGCGACTTTATCGTGAGGTTTTATTGTGGCA
ATAAGGAGTTTAGATTCATCACCCCTAAGAGGCTTAGTCATTTCCAGATA
TCTATCCAAAGCCTTAACAGGGCACAAGGCCTTATTATCTTCAAAAGACT
gaaatttcaactttaaatGTTTGTCACCAGGCTTTTGAGTTTTTGTAGGA
TTTGGAAGTGTAAAACTATAAAAAGAGTTTACCCTCACCATGTAGGAGGT
GTCTAACTGCCAAATTTCAGAAGCACGAGAACCTGAGCACAAGGCTAACA
ACATAACTAACTTATGTGTCATAAGACCAAGATTTCTCGAGTCCAACACC
TCTAGATAATTTAAAACCTGGTCAACATCCCAGATAAAGTTGTATTTTGG
CTTGGGGGGACGCTTGTTGAAGATCCCCTTCATCAAGGCAGAAACTCTTG
GATGCATGCCCACTTTACTTCCGTCTATAGGCATGTGGAAGGCCGAAATT
GCAGACCTATAACCACCTATTGTGCTGAACTCCCTACCTTCCTTAAATTG
GTCAGTTAGGAATTGCAAAATCAGATTTAAAGGACATCTAAAGGGATCAG
CTTGTTGGTCACTACACCAGCGACAAAACTTTCTCCAGGCCGATTCGTAA
TGAGAAAGAGTTCCCTTCCTTCTAGAGTGTATGATAAGGTTGGCAGAGTC
TTCAGATATTCCTTCTGCACTGAGGTTTGCCCGGATACTGTCCATGCCAC
CAGTTGGAGGGAGTTGTTTAGACACAACGGATGACACTCCCCCGCTGGAT
TCTTTAGCAGTTGTCGATATTTTGGTAATAATATTGGATTCCTTATCGAC
ATTCTGAGTAGTAAAGGGTACCATGGCTGGGATTGCCAAGCAGGTGTTAT
GAGAAACAGGGTTGCTTGATCCTTCAGCACCTTTTGTAGCACACGGCCTA
TCAGGGAGAATGGTGGGAAAGCATACCCCCTCAGAGGCCCCCAGTCCTGT
TGAAATGCATCTGTTCCCTGGCTTTTGTGATCCAGTCTCCAAGAGAAGAA
CTTTTGGAGTTGGGTCGTTACTCTTGAGGCAAATAGATCTATCTCTGGAC
GACCCCTCACCCAAGTCATTTTTTGAAACACTTTGGGATCTAGTTTCCAT
TCGCTTCGATCCTTCCTTCTTGACTCCTTGTCTGCTAGACCATTCAAAAT
CCCGGGAAGGTATTCCACAGTAATCGTGATCCCGTATCTTAGGAGGAACT
CCCAAAGGTCCTTGCTTATCTGGTTCATTTCGTGGTTCACTGTACCCCCC
ATTTTTAGGATGTAAGCTAATGCTGAGATGTTGTCCATCTGGAGATGAAC
TGATGTTGGTTTTAACCTGTCTGCAAAAATCAATATGGCCATCTGGGCCC
CTTTTAGTTCCAAAATATTTATATGTTTCACTCTCTCTTCCTCTGACCAA
AGACCCCCTGCTGGTTGGCCTTGACAGACTGCCCCCCAACCTGTCTTGGA
GGCATCTGACTGGACGACTATTTGTGGGGGTTCCATTACTAGGGTCCTCC
CATTGACAGATTCTAGATTCTGAATCCACCAAAGTAATTCCGACCTTGAA
CCCTTGTCCAAGGACAAGACTTTTTCGTAAGAATTCTCCATTAGGAGGTG
TTTTATTTGAAGTCTCTGTATATTTCTGTAGTGAAGAGGGGCTGGAAGTA
CTGCTACTGCTGCAGCTGTCAATCTCCCTAATATCTTTGCCAAATCCCTC
ACAGAAACCTCCCCCTTCTGTAACAGATTCTTGCAATGTGTTTTTATTAT
TGCAACCTTGTCCTGTGGAAGAGATATCTTCATATTGACTGAGTCTACAA
TTACCCCAAGGTACTCTAGTTTTTGGCAAGGCTCTAACACTGATTTTTTC
ATGTTGATTACAAAACCCAAATTCTGTAAAAGGTAAATCAAGGTATCCCT
CAAAGCTATCAATTCCTCCTTGGACTGAGCTAGAAGAATAATGTCGTCCA
AGTACACTATCACTCTCCCATGCAAGCGTCGAATTATTGCTATCGGGATT
TTCATAAGTTTTGTGAACACCCAAGGTGCTGATGAAAGGCCGAAACATAG
GCAAACAAACCGATAAAGTTTTTCTTTCCAACTGAAACCCATATAATCCT
GAGACTCTTTGTGGAGAGGGACCACAAAGTAAGCGTCCTTGAGATCGATT
TTCACCATATAATCGCCCCTCATTAAAAGATCTTTCAAGGAGTGCAAACC
CTCCATTTTGAAATGCTCCTGGGGAATGTATGAgtttaactttttcaaat
ttatgacTGGCCTTTGACCAGAATCCTTCTTTTCTACCAGAAAAATTGTA
CTGAAAAACTTTCCCTCCCCGGGCTGAATTTCCTGGATAGCACCTTTCTC
CAAAAGGGATTTGATCTCCTTGTCCACTAGAGTCACTTCCTTTTCTCCCA
TTGGAATCTCCTTTGGAGGCATTCTCTGATGAGGCTGAGCATTTAAAGGC
ACCTTGTACCCTGAAACAATATTCAAAATTGCCCGGTCGTTTGTCAAAAC
TTCCCAATTTTTTAGGAAGTGTTTTAGCCTTCCTGCTAATGCTAATGGAA
TGTCTCCCGGGCTTTCCTTTGAGAAAAGAGGCATCACTAATGGATGAACC
CTGGACTTTTGAGGCAAATTCAAGAAATGGTTTTCCCTTACCTCTGTTAT
TTCCTCTGTAGTTTCCTCTGAATGAAGAGAACTGAAATCTTGGCTGAAAA
CTGCCTCTTTGACCGCCTGACGACTGCCCCCTACCACCTCGGTAACTTGT
TGGCAAGGGGCCTCTCTGAAAGGGCTGATTTGAACTTGAACCTGCCTTCA
TCATTCCTTTAAACACATCTTTTGACTTCTTTTTCGTCTTTGCACTTCGG
CAAATTTCTTCCTCAAATTTGTTACCAAAAAGATCCTTTGTTGTGTTTTC
TGAGAGGGTTGTCTCCCAATCTCCCAGCATTACTTTTGCTCTCTTATGGT
CTGAGAAGAGGCTTTCTAGAATTAAATGCCGACGGTAGTACGATGTTCTC
TGAGAAGCTTGCCCTACCAGAGCAGTGACTGCATCTAACGTTTTACTTAT
AATTTCCAGCCTCTGGAGTTCTGTTTTGGATTCCTCTGAATCAGTGTCCC
CAGACGACATCAAAGCCTCTCTCTCATTTGCCACAGAAATCCACATCTGG
GACACTGGGCCCATTATACTCCGGATGGATTGTTGAATATGAGTCATATA
GCCATCGATACGTAAGGTTTTTGCTTTACCAAAAGTTTCATTCACAAGCT
CTTTAATGTAAATGTCTAGCTTGGGAGGCTTGTCGACGTTTGAAGGTACG
GGACAGTCCGTTAAAATCTTCTCTTTTATAGATTTGTCACTAAAATGTTT
GGTCAGGTATTTACGAGCATAATCTTCCAGTTCTTTTGGTAGGCTCACAG
ATGAATCCTCATCCTCTTCATCTAACTCCACTCTTGGCATCTTCTCAGGT
GGGGCAGAAGTCTCTTCCTCATCTTCTTCCCTTTCTCTTCGGCCATTTCT
CCTGAATTTCAAATTGGAAAACATTATCAGAACTGCCCTAAGCAAATTCC
TTGTTTCATTATCTTTCACTACCTTCTCTCACCGAGTGAAGAGAGGAATA
AACTCAAAGACCTCTCCTAGAGAGTCTAGTTTCATGTAATGAGTGACCCT
GTGTCCACTGCCTAACAGTGGAATAAGGTCCTCTTTTAAGGGACTGTAAA
TTTAGATATTGACAAAATACACAACAATGGTGCAACACCAATTGTTATTA
TAGCTTTTCCTAGATTATGATAGGGTTGCCAAAGGCAAAACCACAGATAT
TTAAGGAATTTTAATGATCAATTTATACTTACAAGGAATTTGCGTCCGAC
ATCTTTAGCGAGTAGAAAACAAGAGGTAGTTGAAATTATGACCTTCAGTC
ATACAAGAGTAGGGCGTACCCACATCAGATCGGGCGGAGattttatgaaa
tgaaattcGACAATCTTTTGACGGGTAGATTCAGCGTCTTTTCTTGTCAG
GTTACGGAATATCATTAAACCATCGTCACGATACAAACCAATATTACGCT
TGTCAGTGATTTGCGAAAGGTTGTTCAAAATGTAAATACCGACAAGTTCA
CACACTTCAGCACCATCGTAACTTCCCATTGTGACGTCGAAGCAATCGTG
AGATTTGTTCTTTTTCCATGATACGTTGTTTGAAAAGAGAAGGGATTTAC
GGCAGTGATTGATTGTTCTGAGATCATTTTCTGAAATTGTTGTGTGTTGC
ATTGCGAAATTTAGTGCGTTGTCAAGTATTTCTTTAGTGATATTTGGGTA
AAACTCTTTAATGTCCATTTGAATAAAGGAgtgttcatttttattttcga
tgGATGAAAACCATTCGATGACTTGGTCGGAATTCTTCCATTGGTTAAAG
TGAAGGATGTTACGAAGGTCTGTATTGACTCTGTCTAGAATAGATTTACT
GATTGCACCAAGTTCACTTTTGCATGGGTTGATAAGACGACAGGGTTGTT
TTTGGTGGAAGTTTNGCCAATGTTAACTTTTACATGGGTTGATGAGACGA
CAAGGTTgtttttggtggaaatttggTTTATGGTCTTTCAGCGTGATAAA
AGCAGGTGAAGGTGCAAGAATTTCTGCGCGTTCGTGGACTTTGTATGAGA
CTGCTATGTGCTTTGCTTCGTTGTTGATTGCAGATTCGAGATTGATGGGt
gctttttggtaattttttgttacattttcgCGAAGCAATTTATTGTGTTG
ATCGGCAGGCATTTTGTATATATTTGTATATATTTGaggttttgtatata
ttttgttttgaggaaGGAGGTATATAAATATCAATTATACATTTCAggta
aaaagcaaaaaaaagtcttCTCGATTCTTGATCAACTTTTAATAAATAGA
ACTGAATAATGCTGGCAGCCTTGTTGTGACTCTTACCCAGTGTCAACATA
GTTTCATCCCCGTATGTTTAGGGGGGTTCTTCAAATTCCTGTTAGGGAGG
GGGTTGAAAAACTCCCAATTATTAGAGAGAGGGGGGGTATGGTTATATAG
GGGGGTTTAGAAATTTTTACCAAataaatttatcattttcagtGTCATTC
CCGTCGATAATTTTATCCCAGGGTTCACGACCTTGGTTATTAAGGGGAGG
ATCTGAGAAATTTATATATAGGGGGTTTGGcctttagggggggggggggt
tggttAAANATTTTATCCCAGGGTTCACGACCTTGGTTATTAAGGGGAGG
ATCTGAGAAATTTATATATAGGGGGTTTGGcctttagggggggggggagt
tGATTATATAGGGGGGGGCTTGAACCACCCAGGAAACTATGGTCAATACA
AATGTtctaaagctttaaaatgtcaatCTGATTTTAGATTGATGCGGGaa
gtttcaaaattgtttttcatGGAAAAGGCTACAAGAAAGAACCTGAATCA
AGGTTAGTGGCGTTTTTACGTGAAGTACTTGAAAGCTACTGCACTACTCA
ACCTAACTAACAGACTTTGTGAAAAGGAGGTCAAGCCATGATTTAGACTT
GAATCGCTATTAAACGctgtttggttagatattcccgcttctaaatcaag
ttttgttcgttagtagttgatacattattttcagggcttacttcctactg
tttgtacataaaagttatctttaaagttctatttcaatgttcttaagtta
tcaaaaatagcgaataaatttttttttccatccggccgcatgagagcttt
tttccttcacccgcattccgaaaacactacattttttactTTCGTCTTAC
TTCATCATTTTTAGGACAAGTGCAGGAAGACCTGATCAAAGCATGTCATT
GAAGTTCTCTGGACCAGGTATTATTCTATTTTGTATCTAAACAGTGCTGT
GTTTATTAACCAGATAGGATTGGCGTCAAATGTTGATAGCCCTTACATTG
GTTTTCTCATAGTCACAGAATTTTGATGTCATCTTCCCTTGGTAAACTTT
ACCCAATCCTTTCGTGGCTGTTAGAGGTTGAAAAGTGTAttgtttgattt
gatttttagatACATTAATCCGTTTTGGAAAAGAAAACAGCTTTAGTTTA
GAATTCAACCCCCACCTAAGGAAACCAAGGACTCTTAtactaaaaaaaaa
tcaaaacattgagcaGCAGAATCATCTGACAGTTTTCAtcttaattatta
tttttcagagGCAGGATACATTTTCACTTCAACGTGCGTCGTCGCAGCTG
CTGCTACCATTTTAGATGACAACCTCATCAACAAGTAAGTTCACTCATTG
ATTGGTTGTCATTTATCCGATGCAACTGGGGTGATGAAATGACTAACAAT
GTTGAATCACTCTNATCATTTATCTGATGCAACTGGGGTGATGAAATGAC
TAACAATGTTGAATCACTCTTGAGAGCAATCTATCTCTCAGCTTGTCACT
CAACATCGCCAATATCTCATGGCTATGTTACGTCGCAAGCACTTGGGTCA
AAAGTGTGTTGTGAATGACTACTCCATGATTAGTCTATGCTAGAATAGGC
GATTATCCTGGGACAGGGCCCGCAAGGCCGACCACCCTTACTTTAATTAT
CTTCCTCCTCACAGTTAGGCATATAATTTATATGACAATACTGTTTCGAA
TTCATGTTGCGAATTAGACTGTTACATTagatttccatacaggggggggg
gttgacgaaccttttcaaggcaaaaagAGATTCTGGAAAGTGACAAGACT
TTCAAAAGAACCCCTGGAAAGATTCATTTCCGACCTTAAAAGTGATgatg
gacgaactaaaatcagtcttttaccccctggaaatttaagaataaacttt
caccccctggaaaaatgaaaaaatattcctttatacccctggaaattctt
ctccgattacctcctggaaatgttcgcccaccccctgtatggatataaaa
tggaatgccCTATTCCGTTTAGGATACCTTTAGCCTGATAATTCGGCGGG
TTTTTGTGGCGTAAAAgtaatttgttaaaaaatgtcTTTAATTACTTGAA
GAGATTTATGAGCGACTCAAATAAATAATGTTTTCATGGAActaaattgc
aatttttaactCTTCATTTATTTACAGGGGTGGTGTTTTGACTCCTGCTT
CAGCTTTCCGAAAGACCAAATTTGTTGAACGATTGGAAAAACGAAACGTC
AAAATTGAAGTGATGAATTAAAAGAGATTTGGGGCCCAAGTGGAAAATCA
ATACTAAAGCCTATACTAAGGCCTATGTGGTACTCCTATTTCTTCTGCat
taaaaagtatttaaaatgattttgatatttAGTTTGTTTCTTGCAATTTT
AGAATTTAGACCTTTGTTTTTCAATGCAGCTCGTTTTATACTGCATTATC
TTgaagttaattaaaaaaaaaggtttttgtagggataatttataatttga
aatgatttttaatTACGTGCGTTCGTACAGATTTGATTATGTATAGTTTT
TGTCAATATCAAAATACAGTATTTTCTAGCATTCACATTTTATACAGGTA
AATCTCAGACCAAATATATCAACTTTTACAAATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001079XLOC_001079Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002050-exon-sc0000018-1491911889:578858..578882TCONS_00002050-exon-sc0000018-1491911889:578858..578882Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1510915933:578858..578882TCONS_00002050-exon-sc0000018-1510915933:578858..578882Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1575043694:578858..578882TCONS_00002050-exon-sc0000018-1575043694:578858..578882Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1491911889:579212..579341TCONS_00002050-exon-sc0000018-1491911889:579212..579341Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1510915933:579212..579341TCONS_00002050-exon-sc0000018-1510915933:579212..579341Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1575043694:579212..579341TCONS_00002050-exon-sc0000018-1575043694:579212..579341Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1491911889:579552..579598TCONS_00002050-exon-sc0000018-1491911889:579552..579598Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1510915933:579552..579598TCONS_00002050-exon-sc0000018-1510915933:579552..579598Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1575043694:579552..579598TCONS_00002050-exon-sc0000018-1575043694:579552..579598Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1491911889:579746..579867TCONS_00002050-exon-sc0000018-1491911889:579746..579867Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1510915933:579746..579867TCONS_00002050-exon-sc0000018-1510915933:579746..579867Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1575043694:579746..579867TCONS_00002050-exon-sc0000018-1575043694:579746..579867Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1491911889:580746..580980TCONS_00002050-exon-sc0000018-1491911889:580746..580980Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1510915933:580746..580980TCONS_00002050-exon-sc0000018-1510915933:580746..580980Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1575043694:580746..580980TCONS_00002050-exon-sc0000018-1575043694:580746..580980Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1491911889:581210..581266TCONS_00002050-exon-sc0000018-1491911889:581210..581266Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1510915933:581210..581266TCONS_00002050-exon-sc0000018-1510915933:581210..581266Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1575043694:581210..581266TCONS_00002050-exon-sc0000018-1575043694:581210..581266Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1491911889:588695..588759TCONS_00002050-exon-sc0000018-1491911889:588695..588759Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1510915933:588695..588759TCONS_00002050-exon-sc0000018-1510915933:588695..588759Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1575043694:588695..588759TCONS_00002050-exon-sc0000018-1575043694:588695..588759Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1491911889:589122..589174TCONS_00002050-exon-sc0000018-1491911889:589122..589174Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1510915933:589122..589174TCONS_00002050-exon-sc0000018-1510915933:589122..589174Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1575043694:589122..589174TCONS_00002050-exon-sc0000018-1575043694:589122..589174Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1491911889:589516..589591TCONS_00002050-exon-sc0000018-1491911889:589516..589591Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1510915933:589516..589591TCONS_00002050-exon-sc0000018-1510915933:589516..589591Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1575043694:589516..589591TCONS_00002050-exon-sc0000018-1575043694:589516..589591Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1491911889:590435..590893TCONS_00002050-exon-sc0000018-1491911889:590435..590893Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1510915933:590435..590893TCONS_00002050-exon-sc0000018-1510915933:590435..590893Clytia hemisphaericaexon
TCONS_00002050-exon-sc0000018-1575043694:590435..590893TCONS_00002050-exon-sc0000018-1575043694:590435..590893Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:578858..590893 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.9689	16.9026	17.7659	26.3358	5.75367	3.55568	8.04483	10.3958	25.1076	24.8774	63.8216	21.6299	10.9201	10.994	21.6208	29.2645	9.8165	11.8963	13.1958	16.2608	21.3235	14.0744	35.5571	30.0649	5.11338	27.2939	19.0889	26.1735	120.09	95.6225
Blast
[Close]
BLAST of TCONS_00002050 vs. Swiss-Prot (Human)
Match: SCPDL (Saccharopine dehydrogenase-like oxidoreductase OS=Homo sapiens GN=SCCPDH PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.122e-64
Identity = 117/306 (38.24%), Postives = 179/306 (58.50%), Query Frame = 2 
Query:    5 DITGEPEFMQTCQIKYHKAAEEKGVHIVSACGFDSIPADMGLEILRERFPGVLTAAESYIHIRSKRANY----GTYLTIIHSVQNRNSVKDQHKTIFRQKIPYTGPRLRLRNG-GFSNSENRWFIPFLGADPSVVKRTQYHESMVHDRMPVQYFAYFTVPSIFYMICFAIFGVVLFVLTKFSFGIKLLENHPKFFTFGTFCKEGPTRKEIDAGSFKIVFHGKGYKKEPESRTSAGRPDQSMSLKFSGPEAGYIFTSTCVVAAAATILDD--NLINKGGVLTPASAFRKTKFVERLEKRNVKIEVMN 901
            DI+GEP+F++  Q+KYH+ A +KGV+I+ + GFDSIPAD+G+   R +  G LTA ES++ I S         GT+ + I+   ++++++        + +P  GP+L+ R    +      + IPF+G+D SVV+RTQ +     +  PVQY AY TV  I  +I     G+      +F  G +LL   P FF+FG F K+GPT+K+IDA SF + F G+GY +   + T   +P+  +  +  GPEAGY+ T   +V AA T+L D  +L   GGV TP +AF KTK ++RL K  ++  V++
Sbjct:  122 DISGEPQFLELMQLKYHEKAADKGVYIIGSSGFDSIPADLGVIYTRNKMNGTLTAVESFLTIHSGPEGLSIHDGTWKSAIYGFGDQSNLRKLRNVSNLKPVPLIGPKLKRRWPISYCRELKGYSIPFMGSDVSVVRRTQRYLYENLEESPVQYAAYVTVGGITSVIKLMFAGLFFLFFVRFGIGRQLLIKFPWFFSFGYFSKQGPTQKQIDAASFTLTFFGQGYSQ--GTGTDKNKPNIKICTQVKGPEAGYVATPIAMVQAAMTLLSDASHLPKAGGVFTPGAAFSKTKLIDRLNKHGIEFSVIS 425
The following BLAST results are available for this feature:
BLAST of TCONS_00002050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCPDL1.122e-6438.24Saccharopine dehydrogenase-like oxidoreductase OS=... [more]
back to top