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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020890 ID=TCONS_00020890|Name=TCONS_00020890|organism=Clytia hemisphaerica|type=transcript|length=883bp
GTGGAAAATCATTCAGTGTTCTCACCaagcaagcaaacaaacaaaaagtt
tcttgaagaATCTACAAAGTTTCAATCATGAAGATCATCATTCTTGCTGT
TCTTGTTGCAGTTTGCAGTGCAGCAAAACCTCACCCCCATCAACCCTGCC
CAGAATCCTTATGCGTATGGAGATCAGTTGGAGACATCTTTGCATACAAC
GAGCACAAACCATATTATTTTGTGACTTGCACAAACAGTGGTCCAGTATG
CCGAAGATGTGCTGATGGTTTGGAATTCAACGAGAAAAACAAAGCTTGTG
TTCGCTCATTCAAGAAATCATCCACAACAACAACTACCACAACAACTACA
ACCCAGTCCCCACCAGAATGCAACGACTCTTTGTGCAAATGGGTTCCAAA
TGGTTCTTTATTCCGATTGGACAACAACAAACCACAATACTATGTTCAAT
GCAGCAATGGAATCGCTTCATGCCGTCAATGTCCACCTCAcatgtatttc
aacaacaaatttGATGTCTGTGTTCGACGCACTGTACCAAAAGATTGGTA
AACATCCAACCCTAACCAATTGGCCGATATAAGGAGCGGGTCATTGAAAC
TTCTTCTTTTATCAACTTTTGTAAATTcattttgatagttttttttATGT
AGAATAAACATTATTGAGCATTAATACTCCTGCGTATTTTTTGTGTTCCT
TAAAAAGAAATTACAGCtgtgatgctctctaattcgacgctCTACTAATC
GTTACGCTCCatttttcgataatattgaaaaccATTGAACCAACCATGTG
TTTCcctaaacgacgctctactaaaCGATATTCTCCCTTATTCGAGATGT
AAttctccttgaaaatcgaattagagagcttcA Run BLAST on NCBI protein sequence of TCONS_00020890-protein >TCONS_00020890-protein ID=TCONS_00020890-protein|Name=TCONS_00020890-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MKIIILAVLVAVCSAAKPHPHQPCPESLCVWRSVGDIFAYNEHKPYYFVT
CTNSGPVCRRCADGLEFNEKNKACVRSFKKSSTTTTTTTTTTQSPPECND
SLCKWVPNGSLFRLDNNKPQYYVQCSNGIASCRQCPPHMYFNNKFDVCVR
RTVPKDW Run BLAST on NCBI transcript from alignment at sc0000373:155349..156780+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020890 ID=TCONS_00020890|Name=TCONS_00020890|organism=Clytia hemisphaerica|type=transcript|length=1432bp|location=Sequence derived from alignment at sc0000373:155349..156780+ (Clytia hemisphaerica)
GTGGAAAATCATTCAGTGTTCTCACCaagcaagcaaacaaacaaaaagtt
tcttgaagaATCTACAAAGTTTCAATCATGAAGATCATCATTCTTGCTGT
TCTTGTTGCAGGTAAATTTTAATATCATTTTGAATAAGTTTTGAATAAGC
TTTCATTTTAACATATTGaccactttttgaaaaggtatgAAGCCGGATAA
TCATACTCTGAAAAATAAGCGTAAAAGGAAAAACAAgaacaagtgaaaaa
aattaaatactgaCACATCTAATGCGTCAATTGTTAAATGTGTTAAAGCC
aataatttgactttttaatttgttttttcagTTTGCAGTGCAGCAAAACC
TCACCCCCATCAACCCTGCCCAGAATCCTTATGCGTATGGAGATCAGTTG
GAGACATCTTTGCATACAACGAGCACAAACCATATTATTTTGTGACTTGC
ACAAACAGTGGTCCAGTATGCCGAAGATGTGCTGATGGTTTGGAATTCAA
CGAGAAAAACAAAGCTTGTGTTCGCTCATTCAAGAAATCATCCACAACAA
CAACTACCACAACAACTACAACCCAGTCCCCACCAGAATGTAAGTATCTC
CCAGTGACAGTAACTTACAGTATTAACCTATCAAAATATTAcagttcaaa
aatatttaaatcgtaatttttttcattaatttcatGCATATACATTAAAT
CTTACAAATAAAGTCTTAAGTTTGTTTAAGCCTCTCTCCTTGTCTTGGAA
AAGAATTTTGTTAAATCTCCCTAGGAAAACTATGAAATTTATTTCATATG
GTTTCACTCTAAATAGCATTAAGTTAATTATGCTATTAGAAGAGTCAAAG
AGaatgcaaaaaagaaaatattaacctcCTGAATTTGTGACATTACCATC
TAACTACTTCTTTAATAGGCAACGACTCTTTGTGCAAATGGGTTCCAAAT
GGTTCTTTATTCCGATTGGACAACAACAAACCACAATACTATGTTCAATG
CAGCAATGGAATCGCTTCATGCCGTCAATGTCCACCTCAcatgtatttca
acaacaaatttGATGTCTGTGTTCGACGCACTGTACCAAAAGATTGGTAA
ACATCCAACCCTAACCAATTGGCCGATATAAGGAGCGGGTCATTGAAACT
TCTTCTTTTATCAACTTTTGTAAATTcattttgatagttttttttATGTA
GAATAAACATTATTGAGCATTAATACTCCTGCGTATTTTTTGTGTTCCTT
AAAAAGAAATTACAGCtgtgatgctctctaattcgacgctCTACTAATCG
TTACGCTCCatttttcgataatattgaaaaccATTGAACCAACCATGTGT
TTCcctaaacgacgctctactaaaCGATATTCTCCCTTATTCGAGATGTA
AttctccttgaaaatcgaattagagagcttcA Coding sequence (CDS) from alignment at sc0000373:155349..156780+ >TCONS_00020890 ID=TCONS_00020890|Name=TCONS_00020890|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0000373:155349..156780+ (Clytia hemisphaerica)
ATGAAGATCATCATTCTTGCTGTTCTTGTTGCAGTTTGCAGTGCAGCAAA
ACCTCACCCCCATCAACCCTGCCCAGAATCCTTATGCGTATGGAGATCAG
TTGGAGACATCTTTGCATACAACGAGCACAAACCATATTATTTTGTGACT
TGCACAAACAGTGGTCCAGTATGCCGAAGATGTGCTGATGGTTTGGAATT
CAACGAGAAAAACAAAGCTTGTGTTCGCTCATTCAAGAAATCATCCACAA
CAACAACTACCACAACAACTACAACCCAGTCCCCACCAGAATGCAACGAC
TCTTTGTGCAAATGGGTTCCAAATGGTTCTTTATTCCGATTGGACAACAA
CAAACCACAATACTATGTTCAATGCAGCAATGGAATCGCTTCATGCCGTC
AATGTCCACCTCAcatgtatttcaacaacaaatttGATGTCTGTGTTCGA
CGCACTGTACCAAAAGATTGGTAAATGAAGATCATCATTCTTGCTGTTCT
TGTTGCAGTTTGCAGTGCAGCAAAACCTCACCCCCATCAACCCTGCCCAG
AATCCTTATGCGTATGGAGATCAGTTGGAGACATCTTTGCATACAACGAG
CACAAACCATATTATTTTGTGACTTGCACAAACAGTGGTCCAGTATGCCG
AAGATGTGCTGATGGTTTGGAATTCAACGAGAAAAACAAAGCTTGTGTTC
GCTCATTCAAGAAATCATCCACAACAACAACTACCACAACAACTACAACC
CAGTCCCCACCAGAATGCAACGACTCTTTGTGCAAATGGGTTCCAAATGG
TTCTTTATTCCGATTGGACAACAACAAACCACAATACTATGTTCAATGCA
GCAATGGAATCGCTTCATGCCGTCAATGTCCACCTCAcatgtatttcaac
aacaaatttGATGTCTGTGTTCGACGCACTGTACCAAAAGATTGGTAAAT
GAAGATCATCATTCTTGCTGTTCTTGTTGCAGTTTGCAGTGCAGCAAAAC
CTCACCCCCATCAACCCTGCCCAGAATCCTTATGCGTATGGAGATCAGTT
GGAGACATCTTTGCATACAACGAGCACAAACCATATTATTTTGTGACTTG
CACAAACAGTGGTCCAGTATGCCGAAGATGTGCTGATGGTTTGGAATTCA
ACGAGAAAAACAAAGCTTGTGTTCGCTCATTCAAGAAATCATCCACAACA
ACAACTACCACAACAACTACAACCCAGTCCCCACCAGAATGCAACGACTC
TTTGTGCAAATGGGTTCCAAATGGTTCTTTATTCCGATTGGACAACAACA
AACCACAATACTATGTTCAATGCAGCAATGGAATCGCTTCATGCCGTCAA
TGTCCACCTCAcatgtatttcaacaacaaatttGATGTCTGTGTTCGACG
CACTGTACCAAAAGATTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020890-exon-sc0000373-1491911889:155349..155459 | TCONS_00020890-exon-sc0000373-1491911889:155349..155459 | Clytia hemisphaerica | exon |
| TCONS_00020890-exon-sc0000373-1510915933:155349..155459 | TCONS_00020890-exon-sc0000373-1510915933:155349..155459 | Clytia hemisphaerica | exon |
| TCONS_00020890-exon-sc0000373-1575043694:155349..155459 | TCONS_00020890-exon-sc0000373-1575043694:155349..155459 | Clytia hemisphaerica | exon |
| TCONS_00020890-exon-sc0000373-1491911889:155680..155937 | TCONS_00020890-exon-sc0000373-1491911889:155680..155937 | Clytia hemisphaerica | exon |
| TCONS_00020890-exon-sc0000373-1510915933:155680..155937 | TCONS_00020890-exon-sc0000373-1510915933:155680..155937 | Clytia hemisphaerica | exon |
| TCONS_00020890-exon-sc0000373-1575043694:155680..155937 | TCONS_00020890-exon-sc0000373-1575043694:155680..155937 | Clytia hemisphaerica | exon |
| TCONS_00020890-exon-sc0000373-1491911889:156267..156780 | TCONS_00020890-exon-sc0000373-1491911889:156267..156780 | Clytia hemisphaerica | exon |
| TCONS_00020890-exon-sc0000373-1510915933:156267..156780 | TCONS_00020890-exon-sc0000373-1510915933:156267..156780 | Clytia hemisphaerica | exon |
| TCONS_00020890-exon-sc0000373-1575043694:156267..156780 | TCONS_00020890-exon-sc0000373-1575043694:156267..156780 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:155349..156780 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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