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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001974 ID=TCONS_00001974|Name=TCONS_00001974|organism=Clytia hemisphaerica|type=transcript|length=1761bp
GGAAGAGTTCAGAAGGCTTCCATTTTTGGTTCCTTCGTTCTTATATCAAA
AAAAGAAGGAAATCTTTTATCGGGCGAATTTTTTCTTCTCAATTTTGCCC
TTCTTCGTTTTTTCGTAcaattttgaagatattttaattTTCGTTTGGTA
TATGAAggaattttttgctcaaaacaaaaatggataaaattgACAGCAAA
CAATTCGTCAATAAACTTgTATCAGGCATGTTTGAAACAAATTTAGACGA
ATCACACCTCCTGGGTTCGCATTTAGACCCGATGAGTAAATATCTACCCA
AACCAACTGGAGGTGTTAAAATGCCGACCGCGTTTTTAAACAGTTTACAC
GCAGCCAATCCTGATCCCACACAATACGATCCTCATGATATCCTCGATCA
AATTTCGGCTTCTTTACAACCGAATGGCGCTTCTGAAAATTCTTACGACC
ATGGTCCAACTTCAACAAACGCTACAAATTATTCAACATCACATTTGTTG
TCACCTTCCTCGACCTCATTTTCGTCATCAACTTTCAGTAATGGTAATTT
CTCTACCTTCAATAATACCTTTGCTGCAGCTGCAGCCGCTGCGGCCGCAG
CAGCCGCCCAAGTCGGTCAAGAGAGCGAATGTACGCCGCGTGAACTGGAA
TGGTTCGCCGAACGCTTCAAACAACGTCGTATCAAATTAGGCGTCACACA
GGCGGATGTCGGTGGTGCACTGGCACATTTAAAGTTACCAGGAGTTGGTA
GTTTGAGTCAATCTACGATTTGTCGTTTCGAATCACTAACACTTAGCCAT
AATAACATGATGGCTTTAAAACCTGTTCTCTCTGCCTGGTTAGATGAAGC
AGAACGAGCAAACCGTATGAAAGCTAAAGACAGTGCCTTTTTACCAAATG
CTGATAAAAAACGCAAGCGTACGTCCATAGGGGCTGCTGAAAAACGCTCT
TTAGAGGCTTATTTTGCAATGCAGCCAAGACCATCAAGTGATAAGATTGC
AGCCATTGCAGAGAAATTAGACTTGTCCAAAAATGTTGTACGTGTATGGT
TTTGTAATCAAcgacaaaagaagaaaagaatgaaGTTTTCAGttcattaa
aattttgtttggtcgtgatgaaaaataaaaacactgacGACATCTTTTTT
GTAGATATATTTATGATCATCAACACACCTCGTCCCATCTAAAATTAAAA
GGGCTTGGGAGAAATAAGTAAATATGTTTGATTTGCCTCaagagtaaaaa
aaagaaaatttgactaGGTTAGATATCATTTTTACAGGGAGTTTTGTGTT
CCTATCTTCTGACAGGTTTTTGCCCATTTTGAAACCATATTTTGTGTGTG
CATGTTTTTATAAATCTTCATCAAGTTCTACAGTAACTTCTGGAGTCAta
gttctttttcaaattttactacttctgtttattttattttattgtatttg
tatttttattttgtccttgtatattttggcttttttatgccattttttgt
tttctttccttttttatttttccttttttttatcatttcttcTTAAATTA
ATGTATATAGTTtataaatattataaaataaaatgccTTTTGTATTATTT
TGCACATTTTCGAGGTTCCTAAATGACCTCCTAAGTGACCtatgtattat
tattattgtttatTCGAATTTTGcgacaaagaaaatttctttttttattt
atgatgtTTTGTCAAAGAAATCGTACTTTTTGATGacaaaaagaaattac
aaaagaaaaac Run BLAST on NCBI transcript from alignment at sc0000012:1098370..1100877- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001974 ID=TCONS_00001974|Name=TCONS_00001974|organism=Clytia hemisphaerica|type=transcript|length=2508bp|location=Sequence derived from alignment at sc0000012:1098370..1100877- (Clytia hemisphaerica)
GGAAGAGTTCAGAAGGCTTCCATTTTTGGTTCCTTCGTTCTTATATCAAA
AAAAGAAGGAAATCTTTTATCGGGCGAATTTTTTCTTCTCAATTTTGCCC
TTCTTCGTTTTTTCGTACAATTTTGAAGATATTTTAATTTTCGTTTGGTA
TATGAAGGAATTTTTTGCTCAAAACAAAAATGGATAAAATTGACAGCAAA
CAATTCGTCAATAAACTTGTAAGTCCCTTTTTAGGACCTTTTTTTTGTGG
TAGTATTTCATGGCTATACTTAAAAAAAAAATCAGAATTGGAGAGTTTAA
AAAAAATGTTTTATAGTTTTGAAGAACGCTATGATAGATGCATTCAAATC
ATTCAATAAAATATGGTCACAAAACTCTTCCTTCATCAATTATTGATCCA
CTTCAATTGATTTGTTATGGACGCGAAAATGCCTGCTTTCAAATGGAAAA
AAAAATCAATGATTCAATTTTGAATTGACATTTTTTATAAAATATTCGTT
ATTCATCTGTTTTTATGCGAGATATATAGCGGCGATAGAAAAGTGATAAT
TTATGTTAATTGCGTGTAATTAATTCTATTTCACGGCTTTATTCAGAATA
AGTGCTGTTTTCAAATTTCAAGTGTTTGTTATGTTTGGGTGTGTAGAAAA
CGCCTACTTTTAATTATTATCATGCAGAATTATAGCGGCTCTTAAAATGG
CCTTTGGCATATAGCTGTATATGAAAAATTTGAAGGGGTTGAAGGGACCA
GCTCTTATTGAAGCTAGTTTACATAAACATCGGAAAGATTCTTTTTTAAA
GTTAGTGTTTTGTGCTATTGTTTTCCGGGTATTATGATGTTTGGTCGTCT
TCCGATCGTGTAAATCGATGAATGAATCGATAATTTCAAAGGAGAACCGA
AGAGTCATTCCCTGGCCACTTTGACATCGACATTATGTAAATATCTTTTA
ATTTCTATTTTTCAGGTATCAGGCATGTTTGAAACAAATTTAGACGAATC
ACACCTCCTGGGTTCGCATTTAGACCCGATGAGTAAATATCTACCCAAAC
CAACTGGAGGTGTTAAAATGCCGACCGCGTTTTTAAACAGTTTACACGCA
GCCAATCCTGATCCCACACAATACGATCCTCATGATATCCTCGATCAAAT
TTCGGCTTCTTTACAACCGAATGGCGCTTCTGAAAATTCTTACGACCATG
GTCCAACTTCAACAAACGCTACAAATTATTCAACATCACATTTGTTGTCA
CCTTCCTCGACCTCATTTTCGTCATCAACTTTCAGTAATGGTAATTTCTC
TACCTTCAATAATACCTTTGCTGCAGCTGCAGCCGCTGCGGCCGCAGCAG
CCGCCCAAGTCGGTCAAGAGAGCGAATGTACGCCGCGTGAACTGGAATGG
TTCGCCGAACGCTTCAAACAACGTCGTATCAAATTAGGCGTCACACAGGC
GGATGTCGGTGGTGCACTGGCACATTTAAAGTTACCAGGAGTTGGTAGTT
TGAGTCAATCTACGATTTGTCGTTTCGAATCACTAACACTTAGCCATAAT
AACATGATGGCTTTAAAACCTGTTCTCTCTGCCTGGTTAGATGAAGCAGA
ACGAGCAAACCGTATGAAAGCTAAAGACAGTGCCTTTTTACCAAATGCTG
ATAAAAAACGCAAGCGTACGTCCATAGGGGCTGCTGAAAAACGCTCTTTA
GAGGCTTATTTTGCAATGCAGCCAAGACCATCAAGTGATAAGATTGCAGC
CATTGCAGAGAAATTAGACTTGTCCAAAAATGTTGTACGTGTATGGTTTT
GTAATCAACGACAAAAGAAGAAAAGAATGAAGTTTTCAGTTCATTAAAAT
TTTGTTTGGTCGTGATGAAAAATAAAAACACTGACGACATCTTTTTTGTA
GATATATTTATGATCATCAACACACCTCGTCCCATCTAAAATTAAAAGGG
CTTGGGAGAAATAAGTAAATATGTTTGATTTGCCTCAAGAGTAAAAAAAA
GAAAATTTGACTAGGTTAGATATCATTTTTACAGGGAGTTTTGTGTTCCT
ATCTTCTGACAGGTTTTTGCCCATTTTGAAACCATATTTTGTGTGTGCAT
GTTTTTATAAATCTTCATCAAGTTCTACAGTAACTTCTGGAGTCATAGTT
CTTTTTCAAATTTTACTACTTCTGTTTATTTTATTTTATTGTATTTGTAT
TTTTATTTTGTCCTTGTATATTTTGGCTTTTTTATGCCATTTTTTGTTTT
CTTTCCTTTTTTATTTTTCCTTTTTTTTATCATTTCTTCTTAAATTAATG
TATATAGTTTATAAATATTATAAAATAAAATGCCTTTTGTATTATTTTGC
ACATTTTCGAGGTTCCTAAATGACCTCCTAAGTGACCTATGTATTATTAT
TATTGTTTATTCGAATTTTGCGACAAAGAAAATTTCTTTTTTTATTTATG
ATGTTTTGTCAAAGAAATCGTACTTTTTGATGACAAAAAGAAATTACAAA
AGAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001974-exon-sc0000012-1575043694:1100660..1100877 | TCONS_00001974-exon-sc0000012-1575043694:1100660..1100877 | Clytia hemisphaerica | exon |
| TCONS_00001974-exon-sc0000012-1575043694:1098370..1099912 | TCONS_00001974-exon-sc0000012-1575043694:1098370..1099912 | Clytia hemisphaerica | exon |
| TCONS_00001974-exon-sc0000012-1510915933:1100660..1100877 | TCONS_00001974-exon-sc0000012-1510915933:1100660..1100877 | Clytia hemisphaerica | exon |
| TCONS_00001974-exon-sc0000012-1510915933:1098370..1099912 | TCONS_00001974-exon-sc0000012-1510915933:1098370..1099912 | Clytia hemisphaerica | exon |
| TCONS_00001974-exon-sc0000012-1491911889:1100660..1100877 | TCONS_00001974-exon-sc0000012-1491911889:1100660..1100877 | Clytia hemisphaerica | exon |
| TCONS_00001974-exon-sc0000012-1491911889:1098370..1099912 | TCONS_00001974-exon-sc0000012-1491911889:1098370..1099912 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:1098370..1100877 - |
Blast
BLAST of TCONS_00001974 vs. Swiss-Prot (Human)
Match: PO4F3 (POU domain, class 4, transcription factor 3 OS=Homo sapiens GN=POU4F3 PE=1 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 3.562e-79 Identity = 124/155 (80.00%), Postives = 135/155 (87.10%), Query Frame = 3
Query: 627 ECTPRELEWFAERFKQRRIKLGVTQADVGGALAHLKLPGVGSLSQSTICRFESLTLSHNNMMALKPVLSAWLDEAERANRMKAKDSAFLPNADKKRKRTSIGAAEKRSLEAYFAMQPRPSSDKIAAIAEKLDLSKNVVRVWFCNQRQKKKRMKFS 1091
E PRELE FAERFKQRRIKLGVTQADVG ALA+LK+PGVGSLSQSTICRFESLTLSHNNM+ALKPVL AWL+EAE A R K +++KRKRTSI A EKRSLEAYFA+QPRPSS+KIAAIAEKLDL KNVVRVWFCNQRQK+KRMK+S
Sbjct: 181 ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYS 335
The following BLAST results are available for this feature:
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