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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020556 ID=TCONS_00020556|Name=TCONS_00020556|organism=Clytia hemisphaerica|type=transcript|length=3750bpRun BLAST on NCBI protein sequence of TCONS_00020556-protein >TCONS_00020556-protein ID=TCONS_00020556-protein|Name=TCONS_00020556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1226bp MASSYRRNILSISKPDQHAFGMSRAREYQTDEPQSSSSGAGEGMSIFHHERun BLAST on NCBI transcript from alignment at sc0000358:118147..150166+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020556 ID=TCONS_00020556|Name=TCONS_00020556|organism=Clytia hemisphaerica|type=transcript|length=32020bp|location=Sequence derived from alignment at sc0000358:118147..150166+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000358:118147..150166+ >TCONS_00020556 ID=TCONS_00020556|Name=TCONS_00020556|organism=Clytia hemisphaerica|type=CDS|length=66204bp|location=Sequence derived from alignment at sc0000358:118147..150166+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020556 vs. Swiss-Prot (Human)
Match: MY18A (Unconventional myosin-XVIIIa OS=Homo sapiens GN=MYO18A PE=1 SV=3) HSP 1 Score: 441.425 bits (1134), Expect = 1.119e-129 Identity = 341/1017 (33.53%), Postives = 536/1017 (52.70%), Query Frame = 1
Query: 868 TGDFGFTIRRST-IDNG------SKIVHTIEP---TGPDTYGLLPGDRXXXXXXXXXXXFRRDNIIEKIAKSGITVKLKVVPVPELAEFSA---RTAALQAHTPTLGKVNFSSAGSLRTKILTKKVLALPKETGDESEKQWTGADKVWLVHKSGFSSGALSKTSXXXXXXXXXXXXXXXXXXIKLDHGGEVIQKIDESSLEKVNHPKFDNAENLTSLTYLNESGCLHTLRQRYGGNLVHTYAGNNLIVIKPKHPLSAYTKQVMDMFRGCKQEDMPPHIFAMAQTSYRSMLASHVNQSIILQGNAGSGKSFNAKQLLGYLTSVT-VSEHNTSIGAKLSAAQSIVESFISARTKLSRNATFAYNLYSLNFDVYGLVIGASIENYMFDKNRLTRVLPGESTFRIFYELLDSGDMPXXXXXXXXXXXXXXSIFFDFDQQFSTFERHQEKWIQLQHDLETLNISQHEIKGXXXXXXXXXXXNQAGVT--VSPNAKPYFKNIEFAQKASTILGCKIEEIARIVFATPLQXXXXXXXXXXXXXXXXXXXXXXXXXINRLKSEEKLSKTDENSSPKTNKNTDPSISSQILVDNVYDVCVHALEGLLIGLYIEAFTSITRLVNRSLQTVSRTTTTMNILDGPGFQNKTILGLP--GSYEDLTKNYCREKIQWFMHYCSFTATLDRYNRETVGVSYEVDASCAPSFTVQVLDKLT----VDRRNESADAKGIFWIIEEEALRPNSNELILVEKIKT----QHITNKGSSLVSVVPELPEVFTVSHLQNTVKVAYNVSGWLRKVREHPAIKMAYSLLTESSKTHISDLYAGHQSGAFQNESNTQARFVG------------RKRSQSILISVKKNAAVMTVKAQTERLLEQLDRTTVHFVHCFLPDTRAGLIDPNEV---------------SDSQEAGNNFSFDIPYVRKQFKSSYLLENMRLHRLGYPEHIGYPDFRRRFDIL---LAKEDRLAEPVLDEKKVVSDMVKKLEIDERKYKLGLSQVF 3750
TGDFGF++RR+T +D G ++VH EP T GL+PGDR+VE+N NVE+ RD I+E I +SG +V+LKV P+PEL+E S R+ P+ K T++ +A +E+ W +KVWLVH+ GFS + K+ N K +KLDH G ++ +DE +EK N P D E+L SL YLNES LHTLRQRYG +L+HTYAG +L+V+ P+ + Y+++VM MF+GC++EDM PHI+A+AQT+YR+ML S +QSIIL G++GSGK+ + + L+ YL ++ +S + K A +++E+F ++ T ++ NAT + SL+FD G V ASI+ + +K R+ R E+TF +FY LL GD L EL L+ L + + ++ +++ +LQ ++ L IS E K +LAAI L AG T + + F E+AQKA+ +LGC +EE++ +F + L+ + E S T P +S+ + LEG+ GLY E FT + LVNR+L++ + +M I+D PGFQN G S+E+L NY ++++Q H +F L+RY E + ++++ D +V +D+ + V + +A+G+ W++EEEAL P ++E L+E++ + Q KG S + + P F + H T V YNV+GWL +++PA + A LL +S K IS+L+ G ++G+ S + A G RK + + +VKK + + +K Q + L++ + ++ +HFVHCFLP +P D EAG D+P +R Q + S LL+ MR++R GYP+H+ + +FRRRFD+L L K+ V+DE++ V ++++ L++++ +GLS+VF
Sbjct: 228 TGDFGFSLRRTTMLDRGPEGQACRRVVHFAEPGAGTKDLALGLVPGDRLVEINGHNVESKSRDEIVEMIRQSGDSVRLKVQPIPELSELSRSWLRSGEGPRREPSDAK--------------TEEQIA--------AEEAWNETEKVWLVHRDGFSLASQLKSEELNLPEGKVR--------VKLDHDGAILD-VDEDDVEKANAPSCDRLEDLASLVYLNESSVLHTLRQRYGASLLHTYAGPSLLVLGPRGAPAVYSEKVMHMFKGCRREDMAPHIYAVAQTAYRAMLMSRQDQSIILLGSSGSGKTTSCQHLVQYLATIAGISGNKVFSVEKWQALYTLLEAFGNSPTIINGNATRFSQILSLDFDQAGQVASASIQTMLLEKLRVARRPASEATFNVFYYLLACGDGTLRTELHLNHLAENNVFGIVPLAKPEEKQKAAQQFSKLQAAMKVLGISPDEQKACWFILAAIYHLGAAGATKEAAEAGRKQFARHEWAQKAAYLLGCSLEELSSAIFKHQHKGGT-------------------------LQRSTSFRQGPEESG--LGDGTGPKLSA-----------LECLEGMAAGLYSELFTLLVSLVNRALKSSQHSLCSMMIVDTPGFQNPEQGGSARGASFEELCHNYTQDRLQRLFHERTFVQELERYKEENIELAFD-DLEPPTDDSVAAVDQASHQSLVRSLARTDEARGLLWLLEEEALVPGASEDTLLERLFSYYGPQEGDKKGQSPL-LHSSKPHHFLLGHSHGTNWVEYNVTGWLNYTKQNPATQNAPRLLQDSQKKIISNLFLG-RAGSATVLSGSIAGLEGGSQLALRRATSMRKTFTTGMAAVKKKSLCIQMKLQVDALIDTIKKSKLHFVHCFLPVAEGWAGEPRSASSRRVSSSSELDLPSGDHCEAG-LLQLDVPLLRTQLRGSRLLDAMRMYRQGYPDHMVFSEFRRRFDVLAPHLTKKHGRNYIVVDERRAVEELLECLDLEKSSCCMGLSRVF 1171 The following BLAST results are available for this feature:
BLAST of TCONS_00020556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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