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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001858 ID=TCONS_00001858|Name=TCONS_00001858|organism=Clytia hemisphaerica|type=transcript|length=2396bp
GTCGAATACACCCCTATCACAGTTACCCAAGCGaaaattatccGATACAC
AACAACAACAGTCACAAGTGGATAACGGAGAAATAAACGCCTGTCGTGAT
AGCGGAAGAAAAATGATTGATCGTCAGccTGGAACAAAACGGTTTTACAA
CTTGACATCTGAATATGAGAAGACGGCGGCTGGTGATCATGAAGATGTTT
CGGACTCCGATGAAAGCCGCTTATTTGTAGTAAACGACGGTTATTCATCC
GACTTATCCGACATGTCGTCAATTCAtcgtcatcaaaataatttgtcaAC
AAAACGCGTCTTAAAAACACGACAAGTGCTCGATTCAAAACGAAACAGCG
TGGTTATCGACGAATATTTATCCGATACAGATCTTGATTCGTTAAGGACA
TCAACTCGAAACGAACAACGTAAAAAGAGATCGAAAAGTCACCGATTGAT
GAAAGACGAATCGAAGATTTATcgagaaaatttgttcgagaAAGACGATA
AAGATCGTAAACGAAGATCGTGGACTGATTCGGGTGTTTCACTTTCGTTA
TCGAGAACTGACCAATCGAGATGTGGAACTTTTGATCACGGTGTATCGAT
TAGAAACACtgaaatggaaaatgaaaacCAAACACATTTAGAAGTTCCTT
TACGGCGTCGAACGGCTAGTCAACTTCGAAAGACATCGACTGAAGCAACT
AAATCGTTTAATCGATTGTCTCAAATCACGAATCGAAGCTCTTTAACGAA
TGTATCGATCTTAACAACGACATCGATGACTTCTCTCAGTTCGATCATCT
CACCATCGGAATTAGAATATATTTCAGAATCTGAAAGTTATAGTTCATct
gatgatgatattcttaCTGATTCCCTCTTGAGAAATTTGAAACATACTCC
TGGCGGTGGCTCACAATTATCAATGACATCTACAGCTTCTACAATCAAAG
CTGATAACGAGAATATTTCAGCCACCGATCCTGAGAAATATATAGATATG
CAATTAAGGTTATATCAAAAGCAAAAACAACAAACGAATAAATGTCAAAA
ACAATCACATTCTCGTAAAAGAAGCAACAGCCTCATTCAGAAATTCAAAT
CGCATTTTCATAAATCAAAACAGCAGAGTCCGAATCGTAGCTCCAAAGAT
GTGTCGTCAGAATTCTCCTTtgagaaagttgaaaaagattCTAATCAGAA
ATATGAAGTCATTACGACTGATTTTCTAAAGAAACTGAGAGACGAAGAAT
CAGCGCCTTTAGATTTTTATGTTGATGACGTTCAGTATGAAGATGATCTA
AGTGATGAAGATGATGAGAACCAATCAAAAGACCCATTGGAAAATTTCTC
ATCCAAGCCACATAacaaagaacataaaacttttcttggtaaatttttta
aaaggacACGCTCTTATTCGGTTTCACCAcaacttgaaaagaaaacaccG
AAATCACGATTTAGTAGAAATTCGTTTCGAGCAAGCACTCGATCGAATCC
TGAAATGCCATCTAAAgaagataatttttcaaatgttggaCGATATACAT
CGATGgataatttgaatttgaaagaagGTGGCCACCAACAAGACTCTGAA
AATTATACACCGAAAATGAACAGAAGTGAGACTTTTAGTGGAGCTATTTC
ATATAATCATGAAAATCGAACCATGTACGATTCAAACTTTAATCGAAACC
AATTGCCAACACAATCACCTACTATAATGCAAAAACAATGTCTCGGTATT
CCGGCTCACGGTTCTGTTACTCCGAAAGCGAGCAGTCCAGATTTCTCGAA
AGAATCACCAATTCCACCCCCTTCACCGACGCCAAGCGTttttgatttag
aaaaattccaaCAAGTACACATGCCGTTAGACCGTTGTAACTGTGAAGAA
TGTATGTACGCAGACTATCTAGACTATCTTGAGTTTCAACGATTTCGAAG
GTATTATTCTCAATCTTGTTGTGGACCGTGTTGTATGGCTCCAACTGATC
TCCCTGTATCTCCACATACACCACAAATGGCGNACCGTGTTGTATGGCTC
CAACTGATCTCCCTGTATCTCCACATACACCACAAATGGCGCCCATGCGT
ATTTCTCCACGCCATGTACACCCTGAAGCAAATATCATAGCACCTTTACC
GGTGACCaaagaaactgaaaaacaaGCCAAAAATCTTCGCACCTCAATTT
ACGAATCTTTTGTATAATACtatatttttaatgaaatcaatatttttctt
aaagcAGTTTTTATTTATAATGTTGAAATAATTAGAATAACCATTTTTAA
TACAAAACTTCAGCCTCACTTCAAACGCAGTCAGGGATATATGTTCAAAT
TAGCCGATTATCGGTTGTTTAGCCTATTATCGGTTTAGACGATATC Run BLAST on NCBI transcript from alignment at sc0000012:1010914..1018801+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001858 ID=TCONS_00001858|Name=TCONS_00001858|organism=Clytia hemisphaerica|type=transcript|length=7888bp|location=Sequence derived from alignment at sc0000012:1010914..1018801+ (Clytia hemisphaerica)
GTCGAATACACCCCTATCACAGTTACCCAAGCGGttaaaagtatttttct
ttcactCTATCTTTGAGAGTATTTTTCTAAGTCGGCATTTTTTCGGCTAA
TGGTTTTAATAAAAGTCTTAAGTTGGTAGTTATACCAGTGCTAAGATTTG
AACCTCACCTTTTTAATTGAGTGTAACGCTTCTGAGTGTCTCTTAATCTA
AGATTTTACAGAAGATGCCTCCAGGATAGTCTAGAAAGCTCATCTTtcaa
tgggataaacttttatTAAAAGGTGTTGTTGTATTTATAGGACATAACGT
TATTTTAGTCCGGAAAAACAACTTTATAAATGAATACATTAAGAATCTAG
GTATCAAATTTAAGATTACCATGTTAagactttcacaacaaacttgTAAT
TTATTTTTGGCATCCCTTTGAAAGCGGTATTCAAAACATATAAGGTCAAT
TACATAAATTTCCGTTTGTAAAAATCTGAACATGAGGACACCAAAGGTTT
TGCTGTGAATTCGGTTATCTATTTAGTTGGTTCGTCTTGGTTTGATTTTG
TTGGTTCTAACTTCTGTAAATGGTGTAAATCATTGTAAATTAACAACTCC
TTGCTAAATTGAGTTGTAAACAGACTTACAGGATATCAATATGGCGTCGA
AtgaattttatggatttttgtgAAGATTGTTGGTTACATAAGTTATAAAG
TCCTAGTGAAACCCTAGAAAAGTTGGCCAAAAATCGtccagagaaaaaaa
aagacaaaaaacatTTAATCGCAACAGGGAGTTTTTTTGGatcattttgt
gaattttattcGCCAACCAGTAGTTCACTCTCTGTCTCGGACCCTTTAAG
AGAAAGCAAAATACTTCTAAGCAAATTCTTGTAATATTAGTTCGAGCTCT
GGAGTCCAGTCTAGCGTACTGTAAAAATGCGCTAATCACGTAGAATTTAT
AGTTTCAAAAAGAGTTTTGAAACTGTTccaaaagttttgttttgattttc
cctCCTTTGACCACCCACTTGAGGCAACGTAAACAGGCTTAAACGGAATA
AAGTCCTTTTAAAAATCactgtttcccttccctttaaaaacgataaaaat
ttcaaacaaagttACAAAGCAAAGACTTTCTTTtagttttgaaaaacatt
tttgagcgATCGTTTATCTTGAAAGTCTCGTCAGCATGGTGGTTGGTCTG
TGTTTTGACGCACTGTGATTTCGAAAGCTACTTAGGAATCCGACAGAGTT
TTGTTCTTGATTTTAAGATCTTGATCTCTCAGTAGCAACATCATCATTCA
GATATTATTAGCACGtttaagattttcttttcttactGATGTATACTACA
tttctaaagattttttgtCTTCCTATATCCTTGTTAGACTACTACTGATA
CAGAGGAGCCGAATCTGCTCAAATCCCTTGTTTTCAATCAGATTATAGAG
CTTTCAGCGGTTAAATGATCTTTGGAGTTAGTCCTTATACTTTTATCATA
CTTTCTAGTCAGTAATTGGGAAAGTTTTAGGGTTTATTTAATTAGTACGT
GCTGTGGTTAACTGGTTAAAATCTCATCTTACGTTTACTTATCAAGTGTT
TGTTGAGCCCACATACTTAAGAAACAAAACTCGCTCCCAGTTTCCGTTTC
ACTAAGAGGCGTCGGTGGAGTTCTGAAGGGTTCTAAAGAGGATTCTTTGA
CTCCCTGACCCCCTTATTTTCGATATTTAGGTCTAAcggttttttattgt
ttttgataaAGTCTAGCTTTCATGTTTATGTTTTCATTTGCTATCTTTTC
CCTCCATGTGCGAATGACGTTTTTCATAGTAAATTAGTGTGGTGACAATG
TGTCTCTTTTGTCGACTTAAGGATTTTGTTGGGATttgtacttttgaatt
tgttCAAGGGCTTTTAATGACTCAAAAGGGTTGGTTTAAAGAGGTCCTCT
TGTCATTTGGAGCCTGGATGAGGTACCAGCTCTTGACGTTGTTTGCAAAG
TCTTGAATATTGTGTCTTTTTACATTTGATGAACTTTATGGAATAAGCGG
TTTTTATTCGTTGATGGGAGCCATGAAGAGCTTTTTTGCGAGCTTCGGTT
GGATGTACTtattttgagtttgaaatttgttACATTCAGATCATAATTAG
AATCTCTAAGAAAATTTCAGACGTCCTGGTGCCACTTTAAGAATGACATG
GATTTTTTAGTGATCATAAAAAAGCCCTGACGGCAAGAAAGTTCGGAAAA
CTAGCTCTTCCATGTTACTTTGAAACCACAGTACCGGGTGGGGCAACAAA
TTGATAGTCGAAGAAATACTAGatagcagaaatgcactgtaagggtggac
ttttgatgaATGCACTGCAATGGAGGCAATTTCAGCAAATccaggaaaaa
ttgcaaatttttgcccgAAAATTCCGATTTTTCGGCTTtaaaagagttga
aaatttgagaaaaatgtactgtaagggtatgaatttcagcgattttttgc
tgcactgtaagggtacgattctAAAAGCCAGATTTTTCGCCGCACTTACC
CTCAGTTGGTAAACTCACTGCACCGACCCCCGCCGGTCACGATATCAGTG
TAGAAAGTTAAGTTTAGTTCCCATGCTTTCTAGAGGCGGTAGAAAAACCC
TACGTATGCGAGGATAGTACAAATCAATTTCTCATTCATGACGAGAGTAA
TCTAATTGGAAGTTTCTTTATCTAATGAAGTTTAATGAGATACTTAATGA
AGAAGGCAATGTAATTATTTGGATCAGTTAGATCATTAAGAGAAAGATAC
ATGAGCCGGATTTCTTATAACTCATTATCTTGTCAATCGCTTAACGGCTG
CGGATTCAGAGGTTTCTCAAACTTTCTATTGACATACAAAGTTTACAAGG
GAAATGAGGCGTCTTGCTTGGGACGTCTCTTTTTTTGTCActtaatttat
ttttacatcgaagtctccgtaattcgaaatttccacaATTCAAATGAATT
TTCAGCTCAAGTTATGGAAACTCCACTGTATTTTGAATGTACTCTCAATG
AAGGAACCCTTTCAGAAATTTCCGGACCCAGTCAATAAACAGCCCCTtac
tttcttaatttttttatcaaacgaCGTAATATGTcagcaaaaagtttttt
caactttttcgtttttctattttcagaaaattatccGATACACAACAACA
ACAGTCACAAGTGGATAACGGAGAAATAAACGCCTGTCGTGATAGCGGAA
GAAAAATGATTGATCGTCAGGTAAGGTGTTCTAAGGATTTGTAAGGATTA
ACTTGTTCACTTTGTTACCCCTTCTCAAAGTGTGGCTTGGGATTTGATTT
TGGGGTGTTGAGAATAAAGAAAATCGTGTTGTTCCAAGTTATAtctatac
acccctgtgtcacagacccactgagaccccagccccactggaaaatttgg
caaaactttcgtccccggtgaaaaaaatacccttaaatttcagccccact
gggaaattgactttgatttcatccccatttgaaattcaatgtttaaaaat
tatactccaaaCCCATCCCTAtgcactggattttttaaccttggaacaat
agaatttctatccacattggaatttcaataggagtttttatcccaactga
ggaaaaaattccaccggggctgtgagacaggtgtGTATCCATATATCTTG
AGTTAACACAAATGTTACCAACTCCGGCTATTATTCTGCTAAAATGGCAC
ACGTATGAATTTAAAACGACGTTAAAATGAGTTTAGTAGGCTCACTGAAG
AAACATGTATATAAACAGTTTGAGTTACGTAAAACCCTATCATGTGGAGT
AGCTCTCTGGGTTAACTGTGAGCTTAGCGTCCATTTTTGTTTgtcctttt
gttttgtttatttcgtGACGTCATCATAATGGCGGCTCTATTGAGTGACT
CGCAGTCAGTGTACTGCTGTGCTTCAAACAGGTTTTTTTGTATTGCAATT
GATTTGTAGACTAGAACTTAACCTCGTTAAAGCTTGGCGGTGAGCTAGCC
GGGTGATCATAGATTAATGAAAGCTTgttgttttataagaatacctAACT
GAGCCTCCAAAATCAATAATTATTTCAAGATGGGTGATTTATGTCTTAAC
CCTTTTGAACCCTTGGAATCAAAACTGACTTGGCGCCTACTCATAAAATT
TTCACAATGTGTCTTGATTTTCGAATGACCCTGATTTCACAATCTAAAGG
TCAATGTCAACTAATTTGTTTTGGCTAAAACACCACGTCAAATTTGCAGT
GCGTGCTTATCATCACAAATTCTGTCAAGGACAAAAAAGAACATCAAACA
TCTGTtccagtaaaattttcaaggGTTTAATggcttattttgaatttgtc
ttTTTACAAAGCCTGTTTAAGATTGAGAAGAATCTCCTGGATTTTCCCAT
ATGTTTGTTtactttaaatgttcttataagataTATTATCCTTACAATAA
ATTCATTTTATCTTATGACATTAAAAGCAATTAAGTCGTCTTACCGGTTT
GTACTATTTTGTAATTGGGTTAATTTGTGGGTAACCCatctcttcatttt
tttattatgtACAATCTTTTGGCAGCCATCTTGTCTTTTCCTTTTCCTCT
GTCATCATATCAACACAAagagatatttcatttttgatgaattcttgaaa
gttttagtttttatttatttctctgGTGAGGAAAGGCAGTTGGTTTTTGT
TGATGTTGAAGAGTATTGTAAAATTTGTAAAGACTTTTTACCAAGATGGT
GTATTTATAAAGATTGGAAAAGGATTGCTCTATACTGTAAAGAGACAAAT
TTAAGCTCGGTGCAGacattttggagaaaatatttgTTGTTGATTGTGTA
GCAACAAAGTTTTTAAGACTTTTGTTGCTTAATTTATATTGCGTAGAACA
ATGAGTACTTTCGATTTCGAGAAGGTTTACAGCTCGTTTTGTGAGAAAGC
TTTACATCGCTATTCAATTGATTTGGGAAAGGTGGGTGCTTTTTAGAAGT
ATGATTCGAAGCATTTATTGGGTTCAATGCTAGGGCTGTACACCATAAAC
AAAACTTGTTTTTCTGCTATTTTATATTGCGTGAGCATTTTCGTTGGAAA
TATAATGCTAAATGGCATATCAAATTATTTAGAGAGGCTGATGATTAAAC
ACCAAGCAATTTTACTGCAGCAGGATGAAAAGGTTTTTGGTGTTCTTAGA
AAATATCCACTCTCTTATTTTATCTTTGTCCGATGAAATTGGCCTTTTTC
AACTGTTTCACGGACCAAGTTTATGTCccagttttttcttttgttcgtCG
AGACGAGCTATTAACTGTGAATCATCATTATCAAAAtttgttcttagaaa
aaaacgGCTCGATTTCATGAGATCTGATAAAGACGAGGTTATCTTAGTCT
TTAACATGTGACGTCACTTTACAATTAAGTAACAAGTTAAGGCTTAACGC
GCTTAGTCATCAAAACACAGTTCTTAAAATCCCCTAATTAATTTTGAATG
AAGATTAATTGATATACATTAGCCAGAATGATATTTTAATggttttgtta
tgtttttgattttttttagccTGGAACAAAACGGTTTTACAACTTGACAT
CTGAATATGAGAAGACGGCGGCTGGTGATCATGAAGATGTTTCGGACTCC
GATGAAAGCCGCTTATTTGTAGTAAACGACGGTTATTCATCCGACTTATC
CGACATGTCGTCAATTCAtcgtcatcaaaataatttgtcaACAAAACGCG
TCTTAAAAACACGACAAGTGCTCGATTCAAAACGAAACAGCGTGGTTATC
GACGAATATTTATCCGATACAGATCTTGATTCGTTAAGGACATCAACTCG
AAACGAACAACGTAAAAAGAGATCGAAAAGTCACCGATTGATGAAAGACG
AATCGAAGATTTATcgagaaaatttgttcgagaAAGACGATAAAGATCGT
AAACGAAGATCGTGGACTGATTCGGGTGTTTCACTTTCGTTATCGAGAAC
TGACCAATCGAGATGTGGAACTTTTGATCACGGTGTATCGATTAGAAACA
CtgaaatggaaaatgaaaacCAAACACATTTAGAAGTTCCTTTACGGCGT
CGAACGGCTAGTCAACTTCGAAAGACATCGACTGAAGCAACTAAATCGTT
TAATCGATTGTCTCAAATCACGAATCGAAGCTCTTTAACGAATGTATCGA
TCTTAACAACGACATCGATGACTTCTCTCAGTTCGATCATCTCACCATCG
GAATTAGAATATATTTCAGAATCTGAAAGTTATAGTTCATctgatgatga
tattcttaCTGATTCCCTCTTGAGAAATTTGAAACATACTCCTGGCGGTG
GCTCACAATTATCAATGACATCTACAGCTTCTACAATCAAAGCTGATAAC
GAGAATATTTCAGCCACCGATCCTGAGAAATATATAGATATGCAATTAAG
GTTATATCAAAAGCAAAAACAACAAACGAATAAATGTCAAAAACAATCAC
ATTCTCGTAAAAGAAGCAACAGCCTCATTCAGAAATTCAAATCGCATTTT
CATAAATCAAAACAGCAGAGTCCGAATCGTAGCTCCAAAGATGTGTCGTC
AGAATTCTCCTTtgagaaagttgaaaaagattCTAATCAGAAATATGAAG
TCATTACGACTGATTTTCTAAAGAAACTGAGAGACGAAGAATCAGCGCCT
TTAGATTTTTATGTTGATGACGTTCAGTATGAAGATGATCTAAGTGATGA
AGATGATGAGAACCAATCAAAAGACCCATTGGAAAATTTCTCATCCAAGC
CACATAacaaagaacataaaacttttcttggtaaattttttaaaaggacA
CGCTCTTATTCGGTTTCACCAcaacttgaaaagaaaacaccGAAATCACG
ATTTAGTAGAAATTCGTTTCGAGCAAGCACTCGATCGAATCCTGAAATGC
CATCTAAAgaagataatttttcaaatgttggaCGATATACATCGATGgat
aatttgaatttgaaagaagGTGGCCACCAACAAGACTCTGAAAATTATAC
ACCGAAAATGAACAGAAGTGAGACTTTTAGTGGAGCTATTTCATATAATC
ATGAAAATCGAACCATGTACGATTCAAACTTTAATCGAAACCAATTGCCA
ACACAATCACCTACTATAATGCAAAAACAATGTCTCGGTATTCCGGCTCA
CGGTTCTGTTACTCCGAAAGCGAGCAGTCCAGATTTCTCGAAAGAATCAC
CAATTCCACCCCCTTCACCGACGCCAAGCGTttttgatttagaaaaattc
caaCAAGTACACATGCCGTTAGACCGTTGTAACTGTGAAGAATGTATGTA
CGCAGACTATCTAGACTATCTTGAGTTTCAACGATTTCGAAGGTATTATT
CTCAATCTTGTTGTGGACCGTGTTGTATGGCTCCAACTGATCTCCCTGTA
TCTCCACATACACCACAAATGGCGNACCGTGTTGTATGGCTCCAACTGAT
CTCCCTGTATCTCCACATACACCACAAATGGCGCCCATGCGTATTTCTCC
ACGCCATGTACACCCTGAAGCAAATATCATAGCACCTTTACCGGTGACCa
aagaaactgaaaaacaaGCCAAAAATCTTCGCACCTCAATTTACGAATCT
TTTGTATAATACtatatttttaatgaaatcaatatttttcttaaagcAGT
TTTTATTTATAATGTTGAAATAATTAGAATAACCATTTTTAATACAAAAC
TTCAGCCTCACTTCAAACGCAGTCAGGGATATATGTTCAAATTAGCCGAT
TATCGGTTGTTTAGCCTATTATCGGTTTAGACGATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001858-exon-sc0000012-1491911889:1010914..1010946 | TCONS_00001858-exon-sc0000012-1491911889:1010914..1010946 | Clytia hemisphaerica | exon |
| TCONS_00001858-exon-sc0000012-1510915933:1010914..1010946 | TCONS_00001858-exon-sc0000012-1510915933:1010914..1010946 | Clytia hemisphaerica | exon |
| TCONS_00001858-exon-sc0000012-1575043694:1010914..1010946 | TCONS_00001858-exon-sc0000012-1575043694:1010914..1010946 | Clytia hemisphaerica | exon |
| TCONS_00001858-exon-sc0000012-1491911889:1014090..1014183 | TCONS_00001858-exon-sc0000012-1491911889:1014090..1014183 | Clytia hemisphaerica | exon |
| TCONS_00001858-exon-sc0000012-1510915933:1014090..1014183 | TCONS_00001858-exon-sc0000012-1510915933:1014090..1014183 | Clytia hemisphaerica | exon |
| TCONS_00001858-exon-sc0000012-1575043694:1014090..1014183 | TCONS_00001858-exon-sc0000012-1575043694:1014090..1014183 | Clytia hemisphaerica | exon |
| TCONS_00001858-exon-sc0000012-1491911889:1016533..1018801 | TCONS_00001858-exon-sc0000012-1491911889:1016533..1018801 | Clytia hemisphaerica | exon |
| TCONS_00001858-exon-sc0000012-1510915933:1016533..1018801 | TCONS_00001858-exon-sc0000012-1510915933:1016533..1018801 | Clytia hemisphaerica | exon |
| TCONS_00001858-exon-sc0000012-1575043694:1016533..1018801 | TCONS_00001858-exon-sc0000012-1575043694:1016533..1018801 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:1010914..1018801 + |
Blast
The following BLAST results are available for this feature:
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