|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020216 ID=TCONS_00020216|Name=TCONS_00020216|organism=Clytia hemisphaerica|type=transcript|length=3197bpRun BLAST on NCBI protein sequence of TCONS_00020216-protein >TCONS_00020216-protein ID=TCONS_00020216-protein|Name=TCONS_00020216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=546bp MPANVCGHDVDNLLTGASFEELTNQNISPQEESEPNGNEELPEGERDGGDRun BLAST on NCBI transcript from alignment at sc0000350:220910..225639- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020216 ID=TCONS_00020216|Name=TCONS_00020216|organism=Clytia hemisphaerica|type=transcript|length=4730bp|location=Sequence derived from alignment at sc0000350:220910..225639- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000350:220910..225639- >TCONS_00020216 ID=TCONS_00020216|Name=TCONS_00020216|organism=Clytia hemisphaerica|type=CDS|length=6564bp|location=Sequence derived from alignment at sc0000350:220910..225639- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020216 vs. Swiss-Prot (Human)
Match: ZN239 (Zinc finger protein 239 OS=Homo sapiens GN=ZNF239 PE=1 SV=3) HSP 1 Score: 204.527 bits (519), Expect = 1.644e-56 Identity = 101/223 (45.29%), Postives = 135/223 (60.54%), Query Frame = 1
Query: 1093 ERSHICDVCGAGFQWRSHLRRHQKTHTNEK-FECDICHAGFGQQSYFNAHYKSHFNDKPYKCEACGKRFVQSTHLKIHLMIHTGEKPYQCQYCKARFTQHGNLKRHIRVHTGERPYPCTECPSSFTHSSDLTRHIRIHTGEKPYKCAHCSSAFATNGNLKSHLKIHTNANVNPFKCSLCHSAFNLESYLKLHMRTHIHERPFVCA-CGETFDQGLNFNFHLKL 1755
E+ + C+ CG GF S L HQ HT+EK ++CD C GF + S H+ H +KPYKC+ CGK F QS+ L IH +HTGEKPY+C+ C F+Q NL H RVHTGERPY C EC F+ SS+L H IHTGEKPY+C C F+ + +L+ HL++HT P+ C C F+ S L +H R H E+P+ C+ CG+ F Q N + H ++
Sbjct: 232 EKPYKCEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKCGKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGFSQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGE--KPYHCGKCGKGFSQSSKLLIHQRVHTGEKPYECSKCGKGFSQSSNLHIHQRV 452 HSP 2 Score: 180.259 bits (456), Expect = 3.838e-48 Identity = 88/196 (44.90%), Postives = 115/196 (58.67%), Query Frame = 1
Query: 1093 ERSHICDVCGAGFQWRSHLRRHQKTHTNEK-FECDICHAGFGQQSYFNAHYKSHFNDKPYKCEACGKRFVQSTHLKIHLMIHTGEKPYQCQYCKARFTQHGNLKRHIRVHTGERPYPCTECPSSFTHSSDLTRHIRIHTGEKPYKCAHCSSAFATNGNLKSHLKIHTNANVNPFKCSLCHSAFNLESYLKLHMRTH 1677
E+ + CD CG GF S L H HT EK ++CD C GF Q S + H + H +KPY+CE CG F Q ++L IH +HTGE+PY+C C F+Q NL H +HTGE+PY C EC F+ SSDL H+R+HTGEKPY C C F+ + L H ++HT P++CS C F+ S L +H R H
Sbjct: 260 EKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKCGKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGFSQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSSKLLIHQRVHTGEK--PYECSKCGKGFSQSSNLHIHQRVH 453 HSP 3 Score: 171.4 bits (433), Expect = 3.850e-45 Identity = 87/202 (43.07%), Postives = 116/202 (57.43%), Query Frame = 1
Query: 1156 HQKTHTNEK-FECDICHAGFGQQSYFNAHYKSHFNDKPYKCEACGKRFVQSTHLKIHLMIHTGEKPYQCQYCKARFTQHGNLKRHIRVHTGERPYPCTECPSSFTHSSDLTRHIRIHTGEKPYKCAHCSSAFATNGNLKSHLKIHTNANVNPFKCSLCHSAFNLESYLKLHMRTHIHERPFVC-ACGETFDQGLNFNFHLKL 1755
++K HT EK +EC C F Q S H + H +KPYKCE CGK F +S+ L IH +HT EKPY+C C FT+ +L H VHTGE+PY C +C F+ SS L H R+HTGEKPY+C C +F+ NL H ++HT P+KC C F+ S L +H H E+P+ C CG+ F Q + HL++
Sbjct: 197 YEKIHTAEKQYECSQCGKNFSQSSELLLHQRDHTEEKPYKCEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKCGKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGE--RPYKCGECGKGFSQSSNLHIHRCIHTGEKPYQCYECGKGFSQSSDLRIHLRV 396 HSP 4 Score: 122.094 bits (305), Expect = 6.061e-29 Identity = 68/184 (36.96%), Postives = 91/184 (49.46%), Query Frame = 1
Query: 1207 GFGQQSYFNAHYKSHFNDKPYKCEACGKRFVQSTHLKIHLMIHTGEKPYQCQYCKARFTQHGNLKRHIRVHTGERPYPCTECPSSFTHSSDLTRHIRIHTGEKPYKCAHCSSAFATNGNLKSHLKIHTNANVNPFKCSLCHSAFNLESYLKLHMRTHIHERPFVC-ACGETFDQGLNFNFHLKL 1755
G+ Q + ++H +KP CGK S + IHT EK Y+C C F+Q L H R HT E+PY C +C FT SS L H +HT EKPYKC C F + +L H +HT P+KC C F+ S L +H R H E+P+ C CG +F Q N + H ++
Sbjct: 159 GWKSQVVSCSQQRAHTEEKPCDHNNCGKILNTSPDGHPYEKIHTAEKQYECSQCGKNFSQSSELLLHQRDHTEEKPYKCEQCGKGFTRSSSLLIHQAVHTDEKPYKCDKCGKGFTRSSSLLIHHAVHTGE--KPYKCDKCGKGFSQSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRV 340 The following BLAST results are available for this feature:
BLAST of TCONS_00020216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.