TCONS_00019982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019982
Unique NameTCONS_00019982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019982 ID=TCONS_00019982|Name=TCONS_00019982|organism=Clytia hemisphaerica|type=transcript|length=489bp
CTTACATTTTTCACAAGAGCACTCCTACACTTGTGTTTTCGATACCGTCG
TTGAGAAGaattttccatttattttcgTTACCAGTCTCCTCAAAAACTAA
CCGGGCCACTGAGATTTGGCATGTGTATACAAACTAACAAATTAGTCCCC
TCATTTGGAAAGTGGCATAAAATGAAGAGCGTCAAttgtataaaaaaaaa
ttcgattgaGATTTTGCACAACTTACTGTATTCTGGTTTCAGACAAACTG
ACAGCCAATGAAAATGGAGATATTCAAGTCAATTTGGAAGACGGTTCAGA
AGAAGAAGGCATCTATGTTATCGCTTTGCCGTCAAACGAATCCACAGGTT
TCCAAGTGCATGATGGAGAAGGAAATTATGATATCATTGAAGAATCAACG
CAAggTTTTCAATCAAATGAAGAAGAGGAAGAGGAAGAGGGAGAAGAATA
TGAAAATGTTTGCATTGAAATTAGTCCTTCAGAGCAAGG
Run BLAST on NCBI

transcript from alignment at sc0000345:292697..294713+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019982 ID=TCONS_00019982|Name=TCONS_00019982|organism=Clytia hemisphaerica|type=transcript|length=2017bp|location=Sequence derived from alignment at sc0000345:292697..294713+ (Clytia hemisphaerica)
CTTACATTTTTCACAAGAGCACTCCTACACTTGTGTTTTCGATACCGTCG
TTGAGAAGaattttccatttattttcgTTACCAGTCTCCTCAAAAACTAA
CCGGGCCACTGAGATTTGGCATGTGTATACAAACTAACAAATTAGTCCCC
TCATTTGGAAAGTGGCATAAAATGAAGAGCGTCAAttgtataaaaaaaaa
ttcgattgaGATTTTGCACAACTTACTGTATTCTGGTTTCAGACAAACTG
ACAGCCAATGAAAATGGAGATATTCAAGTCAATTTGGAAGACGGTTCAGA
AGAAGAAGGCATCTATGTTATCGCTTTGCCGTCAAACGAATCCACAGGTA
TGTTAtataagaccatgttcagacgtcacggttccgttccgttccgttcc
gaaacggttTCGAAACAAGCGTGAACGTCAAGATTCGAAACGTcgaaaaa
gaagacgttacaaagcaaaacagatcgaaacggtttcgctccactttttt
catcggaactgAACttctccgttttcttgctccgaaacgttccaaaacca
atatgaacagactcgatccgtaacgaaaatcataccggagcgaaacggaa
cagtaacgtgtgaacatagTCTAATCATTTTTCAATGGGCAAAATTACCC
TCAGGGAGGGACGTCCAGGCAAAATGACCGACGGGTATATGTACACCCTA
AAGTGTGTGATTTAAATACTCAAATACTGTTCTTCTTTGGCTTTTTTTAT
CTTTCCTAGAAGGTACTCGACAGAATTTTCAATGTTGTCTTCTTGCAAAA
ATCCTATGTAATAAACCACCAATGGAAGCTTCGAGTAATGACATTATAAA
TCCACGCCCAGTCTCCAACcaaaaagttcttatttttCAGGTTTCCAAGT
GCATGATGGAGAAGGAAATTATGATATCATTGAAGAATCAACGCAAggta
aagtcaaaaagaaacaatctttacaccttttcgaccgtagctgccaattg
ccgcgcgggcatttctTTATCCGTTTTATCcaactaaactcgatccaaac
cttttttgacacatttttctattgtcaatagatgcgaaaaaaggactggg
acggttttagtgtgATATAGCGGAGAAAAAAATACTCGCGCGTCAATTgg
tgactacggtcgaaaaggtgtattatcaatcatgttcttattatgggctc
aatagaccttttcataaattacgtcatgaacatcacttgcctcttATTAC
CATGGTTTgaattatgtcccttgagacattaaataatttagtttatgaat
agaaagtagtttcaaTAAAATCCATAGGGAGTTAATGACCttggtaataa
tttcaaaacgaggcaagtgatgttcgtgacgtaataaTTGGAGTTTAAGG
AAAGGTCAATAACATCGGGGAAAATGCTACAGAAGAGTCTGTATAACTCT
AAAACGGAATTCAAATTGGTTCGAATTAAAGATTTTCGAGCCATGGAGGc
tagtttataaggcattgttaaactgaagaaaCTATCTAACTTGTttaagt
taaggagacattcgagttatagagggtCGTGTTATAGACATTCCACTGTA
TAAAAGTTTATGTACAAGCCAAATCAATCCCTTAtattatacagggtgtc
ctgaaaaaaagtagAAGGTCGAAACATATTGCTAAGTACTGTCGCTTTGT
ACTACTGTTTATTAACCCGAAAAAACATTGTATTATGCTAAGGTagagag
catccggctacggtgtgCGTGAGGTCAAGGGTTTAATCCCCGACTGGGTA
CACTGGGTATCACGAAAATCTTCGCTTTTAGTGCAAAATGGGTCAGGGGT
AAGTGAAGAAAGGGCGGGATCGGCAATCAATTGGATTTTTCTACGTATGA
TAagatttcaataaaattattttcaatttaaggTTTTCAATCAAATGAAG
AAGAGGAAGAGGAAGAGGGAGAAGAATATGAAAATGTTTGCATTGAAATT
AGTCCTTCAGAGCAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011225XLOC_011225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019982-exon-sc0000345-1491911889:292697..293043TCONS_00019982-exon-sc0000345-1491911889:292697..293043Clytia hemisphaericaexon
TCONS_00019982-exon-sc0000345-1510915933:292697..293043TCONS_00019982-exon-sc0000345-1510915933:292697..293043Clytia hemisphaericaexon
TCONS_00019982-exon-sc0000345-1575043694:292697..293043TCONS_00019982-exon-sc0000345-1575043694:292697..293043Clytia hemisphaericaexon
TCONS_00019982-exon-sc0000345-1491911889:293587..293643TCONS_00019982-exon-sc0000345-1491911889:293587..293643Clytia hemisphaericaexon
TCONS_00019982-exon-sc0000345-1510915933:293587..293643TCONS_00019982-exon-sc0000345-1510915933:293587..293643Clytia hemisphaericaexon
TCONS_00019982-exon-sc0000345-1575043694:293587..293643TCONS_00019982-exon-sc0000345-1575043694:293587..293643Clytia hemisphaericaexon
TCONS_00019982-exon-sc0000345-1491911889:294629..294713TCONS_00019982-exon-sc0000345-1491911889:294629..294713Clytia hemisphaericaexon
TCONS_00019982-exon-sc0000345-1510915933:294629..294713TCONS_00019982-exon-sc0000345-1510915933:294629..294713Clytia hemisphaericaexon
TCONS_00019982-exon-sc0000345-1575043694:294629..294713TCONS_00019982-exon-sc0000345-1575043694:294629..294713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:292697..294713 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.66053	8.13855	10.8605	5.86441	4.06822	4.1256	2.41609	2.97971	2.10443	3.29712	1.55414	1.44105	0.525709	0.170145	0.610395	0.724101	1.41776	0.198772	0	0.307227	0	0	3.41519	1.47259	2.91859	2.54335	0.42386	0.794364	0.463522	1.57702
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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