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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019557 ID=TCONS_00019557|Name=TCONS_00019557|organism=Clytia hemisphaerica|type=transcript|length=2459bp
ATAACTTTAGGAAAAACTATTAAAACTAGAAGATAAAATCATATTTTCAT
ACTTTTCTCTTATATTTATATTTCTTTAggtgaaaaataaaaagtatgaA
CAATGTTTGACGCTTATCAAAGTGGTGAGGATGGCCACCGGAGAATCAAG
TACTGAAGACGaattgtcacgtgatttctcaACATTGAGTACATCCTCCT
CTGTTACAAGTTCCATAAGTAGAAAAAGTAATGCAAGTACGTTAAAAGAT
GACCAAGATGGTGAAGATTTATCTCGTCAAGGAACAACAATGTCGGATGA
ATCAACGTCATCCCGACCGACCTCTGGACTATCGNTATCTCGTCAAGGAA
CGACAATGTCGGATGAATCAACGTCATCCCGACCGACCTCTGGACTATCG
TCGGTAGCTACTGCTTCCCGACAAAATACGGTTGGTTCGTTAAGAAGTGA
GAATAATTCACGACAATCTCAACGATCGCTTTCTAGAGGAAGCACTATTC
GAAATGATGATCCCGAAGTGAAGAATAATTCGGTTTCACGAGAATCTTCT
GTCTTGTCTTCTCGGAATGGATATGATGACGATTTTCATGACGACGAAGA
ATCCAGTCCAACTTCGGCATCAAGCCGACAACAGTCGTTTGTCGGGAAAT
CACCAAGTAATGATAATAGTGATGATACTGAGAGCGAAAGTGAAGATATG
GGGAAAATGGAGAAAGAAAACagtgttttgattgaaaaagatGGGAAATT
TGAGTTAGTCGAAGAACGAAACTTAACTATCGATCAACGAGAAGCTCTCG
GTTTAACGAAACGAGAAAAACGAAAACCGAACACGTTGAACATTCCCGCG
TCTAGTGGTCGTGTCCGTAAATCAAGTAACCCGGAGTACGCACATTTGAA
ATCGGAGTACGGTATGAGTGAACAACAGAAGGAGATGAAATTTCGACGTG
TTTCCGTCATGCAGATGAGACGACAGGAGGAGAAGGAACGAATGAAACAA
GAAGACGAAGAGAAGAAGAGAGCAGCTGATAAGTCGTTCCAGCAATGGCT
AGCACAAAAGAAAGAGACCAAAGCAGACAAGAAGCCTGCTACTCCACATC
AAcgtaagaaaaagaagacagtACCTAGTGTACAATTGAGCGAAGAAGAA
ATGCAGCGGCGGGAGCTTCAAGACCGCGCGTTCAAACAATGGATAGATGA
GAAGGAAGAGCAAACGAAAGATGAGAAAAAGATGGAGGAAATCAGACTAG
CTGAAGAAGCACAAAATTATGTTGTCAGAGATCGAAAACAATGTGACAAA
GCTTTTAAAGAATggttgaaaaagaagaaagtggAAAGACAATCAACGCC
CACTCAAACCACCCGGAAGAAGTCAACCTACACACCTGCAGGTGTCACGC
CAACTGCAACCAAGAAGAAGTCTTTAGCACCTATATACGCTCCTTCTCTT
GAGCAGAGGCGCCCTCGTTCTTCTGTACGTAGCATGGCGGCGAATGGGAT
ggattgcaaaaatgacgtcgAAGTAAAGAGGAGAcctaaaacatccaaaa
taagGATAACAGACAATTTTGGATATCGACACCCTGCATCAATCGACGAC
TTCATCGAAAGGAGGAAGTGATAAGCATCGTTGAGCGATAAATGGTATTA
ACTTGTTTTTCAATCAAAGATTACCGTAACTTTGCTTGACGAACCATTCT
CTAGTTGTCACCACCTTTGCTCCAACGACACAGCAACTGATGTTAGGAAC
CAAGGTATAATGATGAACATTGTAACAGACTTGTAACATTCTGCCTCTCT
GATATTGACTAAAATCGAGATTTTGCGATTTGGAATGTGGGTTTCAATCA
ACCATATAAACATGATAACTATTGAATCCCTCCATGATGGAATCAGAAAA
AAGTCGACGAATCCGGGGTAGGTCTCTATATTTTCAAGGGAGAGTATCTT
TAAAGTTTACCGAAATTCCAAGAATCTCTGAAATTTCGAAGAAAATAAAA
GGGAGAATATCttaaaagtttgttaaaattCCAGGAAGCTGAAGTTCCTG
AATAAATCAAGGCATGACAAGTTAAAAGTTTTATCGATTCAGCTTTTTCC
ATCAAAGTTTTACATACAGACTTAATTACCTAACACTTAGGAATAAACTG
TATACTGCTCTTTTTAACATGTTATACAtttattttagttcgaatttaTT
TTGCTACATTATTTTAGGATAGggactttttttgattttgatttttttct
cgataatCAAACCATTTCTTCTCATCCaaaattgtaaataaaaaattact
aaaaacaAAGAATCTTTATTTATATCTTATATCAAAGATAATTAGATTTT
CTCAAATGATTTTAATTGTAAATTTTATTCTTTTACTAAAGATAATATTT
TTAATCCATCATGGTTATTTtcctgaaaatcaaaatttcatgacATTTTT
TAAAACCAG Run BLAST on NCBI transcript from alignment at sc0000331:74211..79148+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019557 ID=TCONS_00019557|Name=TCONS_00019557|organism=Clytia hemisphaerica|type=transcript|length=4938bp|location=Sequence derived from alignment at sc0000331:74211..79148+ (Clytia hemisphaerica)
ATAACTTTAGGAAAAACTATTAAAACTAGAAGATAAAATCATATTTTCAT
ACTTTTCTCTTATATTTATATTTCTTTAggtgaaaaataaaaagtatgaA
CAATGTTTGACGCTTATCAAAGTGGTGAGGATGGCCACCGGAGAATCAAG
TACTGAAGACGaattgtcacgtgatttctcaACATTGAGTACATCCTCCT
CTGTTACAAGTTCCATAAGTAGAAAAAGTAATGCAAGTACGTTAAAAGAT
GACCAAGATGGTGAAGATTTATCTCGTCAAGGAACAACAATGTCGGATGA
ATCAACGTCATCCCGACCGACCTCTGGACTATCGNTATCTCGTCAAGGAA
CGACAATGTCGGATGAATCAACGTCATCCCGACCGACCTCTGGACTATCG
TCGGTAGCTACTGCTTCCCGACAAAATACGGTTGGTTCGTTAAGAAGTGA
GAATAATTCACGACAATCTCAACGATCGCTTTCTAGAGGAAGCACTATTC
GAAATGATGATCCCGAAGTGAAGAATAATTCGGTTTCACGAGAATCTTCT
GTCTTGTCTTCTCGGAATGGATATGATGACGATTTTCATGACGACGAAGA
ATCCAGTCCAACTTCGGCATCAAGCCGACAACAGTCGTTTGTCGGGAAAT
CACCAAGTAATGATAATAGTGATGATACTGAGAGCGAAAGTGAAGATATG
GGGAAAATGGAGAAAGAAAACagtgttttgattgaaaaagatGGGAAATT
TGAGTTAGTCGAAGAACGAAACTTAACTATCGATCAACGAGAAGCTCTCG
GTTTAACGAAACGAGAAAAACGAAAACCGAACACGTTGAACATTCCCGCG
TCTAGTGGTCGTGTCCGTAAATCAAGTAACCCGGAGTACGCACATTTGAA
ATCGGAGTACGGTATGAGTGAACAACAGAAGGAGATGAAATTTCGACGTG
TTTCCGTCATGCAGATGAGACGACAGGAGGAGAAGGAACGAATGAAACAA
GAAGACGAAGAGAAGAAGAGAGCAGCTGATAAGTCGTTCCAGGTACACTA
TCGTATTGTGTGATGTTTTGGTCAAGGTTTTATATAAACTGGCTTTTGCG
GGTTAACTATAATGACTGAAAAAATTCTCGTCTGgctaaaaaaatttctc
aattgTTGGAAAATAATTAAGTTGAGGTTAGCATAGTTCGCACGTTCGAA
AGTGAACTTTTGGTTTGATTACTATTTTTCTCATTGCTCACAGGTTGTCG
ATCATATACAGCCCGTTCTTTTTGTTGGTTTATTCGTAAGACAGAGAGTA
GTTTTTGGTGTTTGGTCTGCTCGAGCTAGCAATAAACTAATTTTAAATTC
TCCTTTTATTCTTCCAGCAATGGCTAGCACAAAAGAAAGAGACCAAAGCA
GACAAGAAGCCTGCTACTCCACATCAAcgtaagaaaaagaagacagtACC
TAGTGTACAATTGAGCGAAGAAGAAATGCAGCGGCGGGAGCTTCAAGACC
GCGCGTTCAAACAATGGATAGATGAGAAGGAAGAGCAAACGAAAGATGAG
AAAAAGATGGAGGAAATCAGACTAGCTGAAGAAGCACAAAATTATGTTGT
CAGAGATCGAAAACAATGTGACAAAGCTTTTAAAGAGTGAggattttgtt
tatgttgatcTCAGCCTTTTATTTTNGGCTGATAAATCGTTCAAGGTACA
CTATCGTATTGTGTGATGTTTTGGTCAAGGTTTTATATAAACTGGCTTTT
GCGGGTTAACTATAATGACTGAAAAAATTCTCGTCTAgctaaaaaaattt
ctcaattgTTGGAAAATAATTAAGTTGAGGTTAGCATAGTTCGCACGTTC
GAAAGTGAACTTTTGGTTTCTTTGATTACTATTTTTCTCATTGCTCACAT
GGGTCACAGGTTGTCGATCATATACAGCCCGTTCTTTTTGTTGGTTTATT
CGTTAGACAAAAAGTAGTTTTTGGTGTTTGGTCTGCTCGAGCTAGCAATA
AACTAATTTTAAATTCTCCTTTTATTTTTCCAGCAATGGCTAGCACAAAA
GAAAGAGACCAAAGCAGACAAGAAGCCTGCTACTCCACATCAAcgtaaga
aaaagaagacagtACCTAGTGTACAATTGAGCGAAGAAGAAATGCAGCGG
CGGGAGCTTCAAGACCGCGCGTTCAAACAATGGATAGATGAGAAGGAAGA
GCAAACGAAAGATGAGAAAAAGATGGAGGAAATCAGACTAGCTGAAGAAG
CACAAAATTATGTTGTCAGAGATCGAAAACAATGTGACAAAGCTTTTAAA
GAGTGAggattttgtttatgttgatcTCAgccttttattttttgaaatct
ttcctGCAAATCTTTCTGGCTTAATCATATTTAAGATACCAGCTTGTCCA
ACAGTAAAGAAAATAATAAGCGACTTTTATGATTTTCCGCCTATCATTAT
GTTGGAGACAGAAATTGACCTTGAAGCACTGCAGAGGTTCACGAGGGAAT
TTCCTTTCTCTATCAAGCAAGAAAAGTAAAACCTTATGTTGAcagaataa
ataatttttttttgattaaatAGTAATTTACCTTTACTTGTCTTAGATgg
ttgaaaaagaagaaagtggAAAGACAATCAACGCCCACTCAAACCACCCG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATAA
ATCGTTCAAGGTACACTATCGTATTGTGTGATGTTTTGGTCAAGGTTTTA
TATAAACTGGCTTTTGCGGGTTAACTATAATGACTGAAAAAATTCTCGTC
TAgctaaaaaaatttctcaattgTTGGAAAATAATTAAGTTGAGGTTAGC
ATAGTTCGCACGTTCGAAAGTGAACTTTTGGTTTCTTTGATTACTATTTT
TCTCATTGCTCACATGGGTCACAGGTTGTCGATCATATACAGCCCGTTCT
TTTTGTTGGTTTATTCGTTAGACAAAAAGTAGTTTTTGGTGTTTGGTCTG
CTCGAGCTAGCAATAAACTAATTTTAAATTCTCCTTTTATTTTTCCAGCA
ATGGCTAGCACAAAAGAAAGAGACCAAAGCAGACAAGAAGCCTGCTACTC
CACATCAAcgtaagaaaaagaagacagtACCTAGTGTACAATTGAGCGAA
GAAGAAATGCAGCGGCGGGAGCTTCAAGACCGCGCGTTCAAACAATGGAT
AGATGAGAAGGAAGAGCAAACGAAAGATGAGAAAAAGATGGAGGAAATCA
GACTAGCTGAAGAAGCACAAAATTATGTTGTCAGAGATCGAAAACAATGT
GACAAAGCTTTTAAAGAGTGAggattttgtttatgttgatcTCAgccttt
tattttttgaaatctttcctGCAAATCTTTCTGGCTTAATCATATTTAAG
ATACCAGCTTGTCCAACAGTAAAGAAAATAATAAGCGACTTTTATGATTT
TCCGCCTATCATTATGTTGGAGACAGAAATTGACCTTGAAGCACTGCAGA
GGTTCACGAGGGAATTTCCTTTCTCTATCAAGCAAGAAAAGTAAAACCTT
ATGTTGAcagaataaataatttttttttgattaaatAGTAATTTACCTTT
ACTTGTCTTAGATggttgaaaaagaagaaagtggAAAGACAATCAACGCC
CACTCAAACCACCCGGAAGAAGTCAACCTACACACCTGCAGGTGTCACGC
CAACTGCAACCAAGAAGAAGTCTTTAGCACCTATATACGCTCCTTCTCTT
GAGCAGAGGCGCCCTCGTTCTTCTGTACGTAGCATGGCGGCGAATGGGAT
ggattgcaaaaatgacgtcgAAGTAAAGAGGAGAcctaaaacatccaaaa
taagGTATTTCTTAATTGCTGATAGTTTGTCTTTTATTAATGCCTTTTAT
CATCCCGAACTCAATTTTAATCGTTCTAAAGTTCTTTTTTTGTGAACGCT
CTCCTCTTTAACTCTTACTTGGCATTATGTTAGGATAACAGACAATTTTG
GATATCGACACCCTGCATCAATCGACGACTTCATCGAAAGGAGGAAGTGA
TAAGCATCGTTGAGCGATAAATGGTATTAACTTGTTTTTCAATCAAAGAT
TACCGTAACTTTGCTTGACGAACCATTCTCTAGTTGTCACCACCTTTGCT
CCAACGACACAGCAACTGATGTTAGGAACCAAGGTATAATGATGAACATT
GTAACAGACTTGTAACATTCTGCCTCTCTGATATTGACTAAAATCGAGAT
TTTGCGATTTGGAATGTGGGTTTCAATCAACCATATAAACATGATAACTA
TTGAATCCCTCCATGATGGAATCAGAAAAAAGTCGACGAATCCGGGGTAG
GTCTCTATATTTTCAAGGGAGAGTATCTTTAAAGTTTACCGAAATTCCAA
GAATCTCTGAAATTTCGAAGAAAATAAAAGGGAGAATATCttaaaagttt
gttaaaattCCAGGAAGCTGAAGTTCCTGAATAAATCAAGGCATGACAAG
TTAAAAGTTTTATCGATTCAGCTTTTTCCATCAAAGTTTTACATACAGAC
TTAATTACCTAACACTTAGGAATAAACTGTATACTGCTCTTTTTAACATG
TTATACAtttattttagttcgaatttaTTTTGCTACATTATTTTAGGATA
GggactttttttgattttgatttttttctcgataatCAAACCATTTCTTC
TCATCCaaaattgtaaataaaaaattactaaaaacaAAGAATCTTTATTT
ATATCTTATATCAAAGATAATTAGATTTTCTCAAATGATTTTAATTGTAA
ATTTTATTCTTTTACTAAAGATAATATTTTTAATCCATCATGGTTATTTt
cctgaaaatcaaaatttcatgacATTTTTTAAAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019557-exon-sc0000331-1491911889:74211..75252 | TCONS_00019557-exon-sc0000331-1491911889:74211..75252 | Clytia hemisphaerica | exon |
| TCONS_00019557-exon-sc0000331-1510915933:74211..75252 | TCONS_00019557-exon-sc0000331-1510915933:74211..75252 | Clytia hemisphaerica | exon |
| TCONS_00019557-exon-sc0000331-1575043694:74211..75252 | TCONS_00019557-exon-sc0000331-1575043694:74211..75252 | Clytia hemisphaerica | exon |
| TCONS_00019557-exon-sc0000331-1491911889:77309..77577 | TCONS_00019557-exon-sc0000331-1491911889:77309..77577 | Clytia hemisphaerica | exon |
| TCONS_00019557-exon-sc0000331-1510915933:77309..77577 | TCONS_00019557-exon-sc0000331-1510915933:77309..77577 | Clytia hemisphaerica | exon |
| TCONS_00019557-exon-sc0000331-1575043694:77309..77577 | TCONS_00019557-exon-sc0000331-1575043694:77309..77577 | Clytia hemisphaerica | exon |
| TCONS_00019557-exon-sc0000331-1491911889:77872..78114 | TCONS_00019557-exon-sc0000331-1491911889:77872..78114 | Clytia hemisphaerica | exon |
| TCONS_00019557-exon-sc0000331-1510915933:77872..78114 | TCONS_00019557-exon-sc0000331-1510915933:77872..78114 | Clytia hemisphaerica | exon |
| TCONS_00019557-exon-sc0000331-1575043694:77872..78114 | TCONS_00019557-exon-sc0000331-1575043694:77872..78114 | Clytia hemisphaerica | exon |
| TCONS_00019557-exon-sc0000331-1491911889:78244..79148 | TCONS_00019557-exon-sc0000331-1491911889:78244..79148 | Clytia hemisphaerica | exon |
| TCONS_00019557-exon-sc0000331-1510915933:78244..79148 | TCONS_00019557-exon-sc0000331-1510915933:78244..79148 | Clytia hemisphaerica | exon |
| TCONS_00019557-exon-sc0000331-1575043694:78244..79148 | TCONS_00019557-exon-sc0000331-1575043694:78244..79148 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000331 | supercontig | sc0000331:74211..79148 + |
Blast
The following BLAST results are available for this feature:
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