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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019392 ID=TCONS_00019392|Name=TCONS_00019392|organism=Clytia hemisphaerica|type=transcript|length=1558bpRun BLAST on NCBI protein sequence of TCONS_00019392-protein >TCONS_00019392-protein ID=TCONS_00019392-protein|Name=TCONS_00019392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp MSEQALRTIQEAYSNGTLRPNVLDQRGLSLLHYAAFDGQLLCVKCLINYGRun BLAST on NCBI transcript from alignment at sc0000326:324585..334158+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019392 ID=TCONS_00019392|Name=TCONS_00019392|organism=Clytia hemisphaerica|type=transcript|length=9574bp|location=Sequence derived from alignment at sc0000326:324585..334158+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000326:324585..334158+ >TCONS_00019392 ID=TCONS_00019392|Name=TCONS_00019392|organism=Clytia hemisphaerica|type=CDS|length=11475bp|location=Sequence derived from alignment at sc0000326:324585..334158+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019392 vs. Swiss-Prot (Human)
Match: ESPN (Espin OS=Homo sapiens GN=ESPN PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 7.437e-27 Identity = 82/247 (33.20%), Postives = 118/247 (47.77%), Query Frame = 3
Query: 165 LRTIQEAYSNGTLRPNVLDQRGLSLLHYAAFDGQLLCVKCLINYGA-DIHARSREGFVAAHYAAAGGHLPILQFLYERDKTSVTVRNEFDLTPLYVAAQEGQLDCLIWLNKYTRTVRYSTSVEKMNAALVAAQEGRLDCLRYLVRVERELVKAKDRNGFNVIHYAASEGHSRVLKWLIDHCNIPGGAQSK--MGQTALHLAAIGGHASSIEILIKCGVSLEIEDDHGKTALDYST-NSNQECKELLQ 893
L +Q S G R D G ++LH AA G V L+++G D A + G + HYAAA G P L+ L E V + + TPLY+A QEG L+ +L + ++ + + M AAQ G + +LV + +D++G +H+AAS GH++VL WL+ H GG S G T LH AA G +IL+ G L++ D G TA D S N + C L+
Sbjct: 83 LACLQWLLSQGGCRVQDKDNSGATVLHLAARFGHPEVVNWLLHHGGGDPTAATDMGALPIHYAAAKGDFPSLRLLVEHYPEGVNAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHARAHDGMTPLHAAAQMGHSPVIVWLVSCTDVSLSEQDKDGATAMHFAASRGHTKVLSWLLLH----GGEISADLWGGTPLHDAAENGELECCQILVVNGAELDVRDRDGYTAADLSDFNGHSHCTRYLR 325 HSP 2 Score: 95.9005 bits (237), Expect = 1.288e-20 Identity = 75/237 (31.65%), Postives = 118/237 (49.79%), Query Frame = 3
Query: 165 LRTIQEAYSNGTLRPNVLDQRGLSLLHYAAFDGQLLCVKCLI-NYGADIHARSREGFVAAHYAAAGGHLPILQFLYERDKTSVTVRNEFDLTPLYVAAQEGQLDCLIWLNKYTRTVRYSTSVEKMNAALV--AAQEGRLDCLRYLVRVERELVKAKDRNGFNVIHYAASEGHSRVLKWLIDHCNIPGGAQSKMGQTALHLAAIGGHASSIEILIKC-GVSLEIEDDHGKTALDYSTN 863
L ++ ++ G L P++ D +H+AA G+L C++ L+ AR+R G AH A+A GHL LQ+L + V ++ T L++AA+ G + + WL + T+ M A + AA +G LR LV E V A+ +NG ++ A EGH V ++L+ C A++ G T LH AA GH+ I L+ C VSL +D G TA+ ++ +
Sbjct: 15 LDVLRSLHAAGLLGPSLRDPLDALPVHHAARAGKLHCLRFLVEEAALPAAARARNGATPAHDASATGHLACLQWLLSQGGCRVQDKDNSGATVLHLAARFGHPEVVNWLLHHGGG--DPTAATDMGALPIHYAAAKGDFPSLRLLVEHYPEGVNAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHARAHDGMTPLHAAAQMGHSPVIVWLVSCTDVSLSEQDKDGATAMHFAAS 249 The following BLAST results are available for this feature:
BLAST of TCONS_00019392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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