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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019048 ID=TCONS_00019048|Name=TCONS_00019048|organism=Clytia hemisphaerica|type=transcript|length=4713bpRun BLAST on NCBI transcript from alignment at sc0000317:225105..256727- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019048 ID=TCONS_00019048|Name=TCONS_00019048|organism=Clytia hemisphaerica|type=transcript|length=31623bp|location=Sequence derived from alignment at sc0000317:225105..256727- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019048 vs. Swiss-Prot (Human)
Match: CSMD3 (CUB and sushi domain-containing protein 3 OS=Homo sapiens GN=CSMD3 PE=2 SV=3) HSP 1 Score: 210.69 bits (535), Expect = 1.864e-54 Identity = 174/618 (28.16%), Postives = 251/618 (40.61%), Query Frame = 3
Query: 1848 DMPDVDNG-KVSGETHYGGVVTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTCKISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCTEIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVC--VDTNECAAKPSPCKGEGDITCINSFGSFQCICEEGYQKIDEVTCK-------DINECSSNATNIVKCDQICTNTPGAYNCS-----------CKDGYFLYTGNQTLNKVEERTAIEYHSCFGN--PCPVVDYLDNGYILNY------GNRYPVELEYRCNPGYVLDRVVKPKCLKNGTWSEKFPKCVESGCLMPKDVSNSIQSVNGTIHNSTGRYAEGSIVEYQCDHGYE-RTSGNLLQECVQDAIKFYWSGKSPVCERVSCGVPQSPKNGYAQTNGTQYKDNATFHCSGGYQMIGHNQTTCQANGEWSGFTPVCAPSPCPDPGTPLNGARNGTVALGQT-VRYTCTKQGYKLFGDAERTCVYLGQKTGNGWTGALPVC 3608
++P NG K+ +T YG +TCD + LV + CL G WS+ C C P L+ NG +VI N Y + Y C+ G+ + G R+CQ++ WSG+ P+C C PG P G G+ F V+F C+ G+L++G + C N +W+ P C + C+ P P N E + ++ YG+ V C G+ G+ C+ G WD + C +D P+ G+ S + C + TC+ CS +AT C T G+ S C GY L+ EERT + S G C V + G N G + + Y C GY+L +C NGTWS P C C P +N ++ + Y G V Y C GY +G+ ++ C I WSG P C V+C P NG + + + ++ CS GY++ TC NG WSG P C P C DPG P G R G + Q+ V ++C + L G + R C Q G W+G+ P C
Sbjct: 2761 ELPTPPNGNKIGTQTSYGSTAIFTCDLGFMLVGSAVRECLSSGLWSESETRCLAGHCGIPELIVNG--QVIGEN---YGYRDTVVYQCNPGFRLI-GSSVRICQQDHNWSGQLPSCVPVSCGHPGSPIYGRTSGNGFNFNDVVTFSCNIGYLMQGPTKAQCQANRQWSHPPPMCKVVNCSDPGIPANSKRES-KIEHGNFTYGTVVFYDCNPGYFLFGSSVLICQPNGQWDKPLPECIMIDCGHPGVPPNAVL-SGEKYTFGSTVHYSCTGKRSLLGQSSRTCQLNGHWSGSQPHCSGDATG--TCGDPGTPGHGSRQESNFRTKSTVRYACDTGYILHGS-------EERTCLANGSWTGRQPECKAVQCGNPGTTANGKVFRIDGTTFSSSVIYSCMEGYILSGPSVRQCTANGTWSGTLPNCTIISCGDPGIPANGLRYGD--------DYVVGQNVSYMCQPGYTMELNGSRIRTCT---INGTWSGVMPTCRAVTCPTPPQISNGRLEGTNFDWGFSISYICSPGYELSFPAVLTCVGNGTWSGEVPQCLPKFCGDPGIPAQGKREGKSFIYQSEVSFSCNFP-FILVGSSTRIC----QADGT-WSGSSPHC 3344 HSP 2 Score: 194.126 bits (492), Expect = 2.133e-49 Identity = 254/1004 (25.30%), Postives = 375/1004 (37.35%), Query Frame = 3
Query: 936 GYQIELTFEDFSTEDGFDYVDVIDGLTSASNFIARYSGNNLTIAPITSSSNTLMVQFVSDEGDNFKGFKAKYRAVKTTCGGQMLIVNDPVYINSPGYPLKPYPNDVKCVWDFRNDKVPYLLTFRMLELKTEEKADFVEVRNKDEEGYILRKYSGNSFNGAVVTAADSHLWIKFQSDFESNDKGFRAVVYPGCYA-VLKKD-FGIISSPGFGYTNYPNLLNCTWKFETQR--NISIIFHFFDTEKDYDFVRVFNG-----------------------NGGKIHEYSGSLTKDQ--DKTGMFTSVI---------------------EMNDLTLRFTSDKSYRMKG-------------------FNATYSIGCDMPDV--DNGKVSGETHYGGVVTYTCDKFYTLVNGDKQT--CLFGGKWSQ--PTPYCKPAFC--MFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWS--GEHPTCKISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCTEIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVCVDTNECAAKPSPCKGE--GDITCINSFGSFQCICEEGYQKIDEVTCKDINECSSNATNIVKCDQICTNTPGAYNCS--------------------CKDGYFLYTGNQTLNKVEERTAIEYHSCFGNPCPVVDYLDNGYILNYGNRYPVELEYRCNPGYVLDRVVKPKCLKNGTWSEKFPKCVESGCLMPKDVSNSIQSVNGTIHNST--GRYAEGSIVEYQCDHGYERTSGNLLQECVQDAIKFYWSGKSPVCERVSCGVPQSPKNGYA-QTNGTQYKDNATFHCSGGYQMIGHNQTTCQANGEWSGFTPVCAPSPCPDPGTPLNGARNG-TVALGQTVRYTCTKQGY--KLFGDAERTCVYLGQKTGNGWTGALPVCKDVMKP 3626
G I + F TE +D++ V DG S I ++SGN + + S+SN +++ K+ + TT G +++ Y P P PN E+ TE+ ++ E G I+R F L + Q D G V C A L+ D G+I SPG+ +YPNL C W ++ NI++ FF TEK++D ++V++G NG HE + D +K G I ++N + +R+ D+ +R+ G A +I C +P + G ++ + G VTY C+ Y L + + T C G WS TP C C + ++ +G ++++ N + Y T + + CD GY G + C NGTWS E P C+I C + P NG +IG + GS+ F CD GF+L G + C +G W+ C C P NG + G N Y Y V QC GF G+ C+ W + CV + C SP G G+ N +F C Q + C+ + S C + + PG S C GYFL+ + + + + C C N + + + Y C L C NG WS P C SG D + + H S + S V Y CD GY G+ + C+ + W+G+ P C+ V CG P + NG + +GT + + + C GY + G + C ANG WSG P C C DPG P NG R G +GQ V Y C + GY +L G RTC G W+G +P C+ V P
Sbjct: 2318 GNGIYINFTVLQTEPIYDFITVWDGPDQNSPQIGQFSGNT-ALESVYSTSNQILI---------------KFHSDFTTSG--FFVLSYHAYQLRVCQPPPPVPN---------------------AEILTED--------DEFEIGDIIRYQCLPGFTLVGNAILTCRLGERLQMD------GAPPVCQVLCPANELRLDSTGVILSPGYP-DSYPNLQMCAWSISVEKGYNITMFVEFFQTEKEFDVLQVYDGPNIQSPVLISLSGDYSSAFNITSNG---HEVFLQWSADHGNNKKGFRIRYIAFYCSTPESPPHGYIISQTGGQLNSV-VRWACDRGFRLVGKSSAVCRKSSYGYHAWDAPVPACQAISCGIPKAPTNGGILTTDYLVGTRVTYFCNDGYRLSSKELTTAVCQSDGTWSNHNKTPRCVVVTCPSINSFILEHGRWRIV--NGSHYEYKTKVVFSCDPGYHGL-GPASIECLPNGTWSWRNERPYCQIISCGELPTPPNGNKIGTQTSYGSTAIFTCDLGFMLVGSAVRECLSSGLWSESETRCLAGHCGIPELIVNGQVIGEN-----YGYRDTVVYQCNPGFRLIGSSVRICQQDHNWSGQLPSCVPVS-CGHPGSPIYGRTSGNGFNFNDVVTFSCNIGYLMQGPTKAQCQANRQWSHPPP---MCKVVNCSDPGIPANSKRESKIEHGNFTYGTVVFYDCNPGYFLFGSSVLICQPNGQWDKPLPECIMIDCGHPGVPPNAVLSGEKYTFGSTVHYSCTGKRSLLGQSSRTCQLNGHWSGSQPHC--SG-----DATGTCGDPGTPGHGSRQESNFRTKSTVRYACDTGY-ILHGSEERTCLANG---SWTGRQPECKAVQCGNPGTTANGKVFRIDGTTFSSSVIYSCMEGYILSGPSVRQCTANGTWSGTLPNCTIISCGDPGIPANGLRYGDDYVVGQNVSYMC-QPGYTMELNGSRIRTCTINGT-----WSGVMPTCRAVTCP 3234 HSP 3 Score: 192.2 bits (487), Expect = 9.053e-49 Identity = 175/628 (27.87%), Postives = 254/628 (40.45%), Query Frame = 3
Query: 1869 GKVSGET-HYGGVVTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTCKISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCT---EIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVCVDTNECAAKPSPCKGEG---DITCINSFGSFQCICEEGYQKIDEVTCKDINECSSNAT---NIVKCDQICTNTPG--------------AYNCS--CKDGYFLYTGNQTLNKVEERTAI-------EYHSCFGNPCPVVDYLDNGYILNYGNRYPVELEYRCNPGYVLDRVVKPKCLKNGTWSEKFPKCVESGCLMPKDVSNSIQSVNGTIHNSTGRYAEGSIVEYQCDHGYERTSGNLLQECVQDAIKFYWSGKSPVC---ERVSCGVPQSPKNGYAQ-TNGTQYKDNATFHCSGGYQMIGHNQTTCQANGEWSGFTPVCAPSPCPDPGTPLNGARNGT--VALGQTVRYTCTKQGYKLFGDAERTCVYLGQKTGNGWTGALPVCKDVMKPVFK 3635
G+ SG ++ VVT++C+ Y + K C +WS P P CK C PG+ AN + + + T++ Y C+ GY + G +CQ NG W P C + C PG P N G+ +T GS+V + C L GQSS TC +NG W+ P C+ C P P +G + N S V+ C TG+ G+E TC G W C +C + G+ D T +S + C+ EGY ++ + +C++N T + C I PG N S C+ GY + LN RT +C CP + NG + + + Y C+PGY L C+ NGTWS + P+C+ C P + + I+ S V + C+ + G+ + C D WSG SP C + SC P P++G T G Q FHC G+ + G TC + WSG P C P C P TP + G + G T+ YTC + G R C ++ N WTG +P+C+ K + K
Sbjct: 2884 GRTSGNGFNFNDVVTFSCNIGYLMQGPTKAQCQANRQWSHPPPMCKVVNCSDPGIPANSKRESKIEHGN-FTYGTVVFYDCNPGYFLF-GSSVLICQPNGQWDKPLPECIMIDCGHPGVPPNAVLSGEKYTFGSTVHYSCTGKRSLLGQSSRTCQLNGHWSGSQPHCSGDATGTCGDPGTPGHGSRQESNFRTKS-----TVRYACDTGYILHGSEERTCLANGSWTGRQPEC-KAVQCGNPGTTANGKVFRIDGTTFSSSVIYSCM--EGYI----LSGPSVRQCTANGTWSGTLPNCTIISCGDPGIPANGLRYGDDYVVGQNVSYMCQPGYTM-----ELNGSRIRTCTINGTWSGVMPTCRAVTCPTPPQISNGRLEGTNFDWGFSISYICSPGYELSFPAVLTCVGNGTWSGEVPQCLPKFCGDPGIPAQGKREGKSFIYQSE--------VSFSCNFPFILV-GSSTRICQADGT---WSGSSPHCIEPTQTSCENPGVPRHGSQNNTFGFQVGSVVQFHCKKGHLLQGSTTRTCLPDLTWSGIQPECIPHSCKQPETPAHANVVGMDLPSHGYTLIYTCQPGFFLAGGTEHRVC-----RSDNTWTGKVPICEAGSKILVK 3475 HSP 4 Score: 154.066 bits (388), Expect = 3.684e-37 Identity = 131/423 (30.97%), Postives = 174/423 (41.13%), Query Frame = 3
Query: 1905 VTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTCKISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLE--GQSSITCGVNGKWNAQAPTCTEIRCTPPSPPQ--NGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVCVDTNECAAKPSPCKG--EGDITCINSFGSFQCICEEGYQKIDEVTCKDINECSSNATNIVKCDQICTNTPGA-----------------YNCSCKDGYFLYTGNQTLNKVEERT--AIEY----HSCFGNPCPV------VDYLDNGYILNYGNRYPVELEYRCNPGYVLDRVVKPK-CLKNGTWSEKFPKCVESGCLMPKD 3065
V Y CD Y L +++TCL G W+ P CK C PG ANG KV + T + I Y C GY + G R C NGTWSG P C I C DPG P NG R GDD+ VG +VS+ C G+ +E G TC +NG W+ PTC + C P+PPQ NG LEG N + +G + C G+ TC G G W +V C+ C P +G EG S SF C C+ S ++ + ++ Q PG CK G+ L G+ T + + T I+ HSC P +D +GY L Y C PG+ L + + C + TW+ K P C ++ KD
Sbjct: 3078 VRYACDTGYILHGSEERTCLANGSWTGRQPECKAVQCGNPGTTANG--KVFRIDGTTFSSSVI--YSCMEGY-ILSGPSVRQCTANGTWSGTLPNCTIISCGDPGIPANGLRYGDDYVVGQNVSYMCQPGYTMELNGSRIRTCTINGTWSGVMPTCRAVTC--PTPPQISNGRLEGTNFD-----WGFSISYICSPGYELSFPAVLTCVGNGTWSGEVPQCLP-KFCGDPGIPAQGKREGKSFIYQSEVSFSCNFPFILVGSSTRICQADGTWSGSSPHCIEPTQTSCENPGVPRHGSQNNTFGFQVGSVVQFHCKKGHLL-QGSTTRTCLPDLTWSGIQPECIPHSCKQPETPAHANVVGMDLPSHGYTL----------IYTCQPGFFLAGGTEHRVCRSDNTWTGKVPICEAGSKILVKD 3476 HSP 5 Score: 115.931 bits (289), Expect = 1.436e-25 Identity = 77/256 (30.08%), Postives = 117/256 (45.70%), Query Frame = 3
Query: 1854 PDVDNGKVSGETH-YGGVVTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTC---KISLCEDPGKPTNGTRIGD-DFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCTEIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFH-ADGNETSTCKGVGMWDPDVAVCVDTNECAAK-PSPCKG 2600
P + NG++ G +G ++Y C Y L TC+ G WS P C P FC PG+ A G ++ + + + C+ + + G TR+CQ +GTWSG P C + CE+PG P +G++ F VGS V F C +G LL+G ++ TC + W+ P C C P P + + G+++ +G + C GF A G E C+ W V +C ++ K P P G
Sbjct: 3237 PQISNGRLEGTNFDWGFSISYICSPGYELSFPAVLTCVGNGTWSGEVPQCLPKFCGDPGIPAQG-----KREGKSFIYQSEVSFSCNFPF-ILVGSSTRICQADGTWSGSSPHCIEPTQTSCENPGVPRHGSQNNTFGFQVGSVVQFHCKKGHLLQGSTTRTCLPDLTWSGIQPECIPHSCKQPETPAHANVVGMDLPS----HGYTLIYTCQPGFFLAGGTEHRVCRSDNTWTGKVPICEAGSKILVKDPRPALG 3482 The following BLAST results are available for this feature:
BLAST of TCONS_00019048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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