TCONS_00001998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001998
Unique NameTCONS_00001998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001998 ID=TCONS_00001998|Name=TCONS_00001998|organism=Clytia hemisphaerica|type=transcript|length=499bp
GTGAAACGGCATAAGATTTCCCCAAGATGCCATTCGTGCTCTTTAAACCG
GCGATGAACATATAACATTTCGGACAGGGCGTAAATTAGATCGGACGCCG
ATAAACATTGAATTAATAACTTATGCTTGGACAAATAACTTTTACTTGAG
CATGCGCATAATGTGAAAATATTCAACAATAGCGACAATGATACAACAGT
TAATTGATACCACGAGACAGCGTTTTCAATAGCCAAGAACAATCTCATCT
GTGGATCTTGTTGCATGCTGCTGTATTCGAGTTGTTGAAATGTTGAAGTA
TTAACGCATAATGAAGCGTTAGAGATGATATCGCTGGTTATATTACACTT
CATCATATCCATACACGATTattgagttttgatttattttttcattccgA
CACCttgatcaaatttttgtttttgtctacTTTCGATAttctatttcaaa
aacaatatattttcacgcctttttttcaacttttcatccTTTATCCGAC
Run BLAST on NCBI

protein sequence of TCONS_00001998-protein

>TCONS_00001998-protein ID=TCONS_00001998-protein|Name=TCONS_00001998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MDMMKCNITSDIISNASLCVNTSTFQQLEYSSMQQDPQMRLFLAIENAVS
WYQLTVVSLSLLLNIFTLCACSSKSYLSKHKLLIQCLSASDLIYALSEML
YVHRRFKEHEWHLGEILCRF
Run BLAST on NCBI

transcript from alignment at sc0000012:435425..435923

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001998 ID=TCONS_00001998|Name=TCONS_00001998|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at sc0000012:435425..435923 (Clytia hemisphaerica)
GTCGGATAAAggatgaaaagttgaaaaaaaggcgtgaaaatatattgttt
ttgaaatagaaTATCGAAAgtagacaaaaacaaaaatttgatcaaGGTGT
cggaatgaaaaaataaatcaaaactcaatAATCGTGTATGGATATGATGA
AGTGTAATATAACCAGCGATATCATCTCTAACGCTTCATTATGCGTTAAT
ACTTCAACATTTCAACAACTCGAATACAGCAGCATGCAACAAGATCCACA
GATGAGATTGTTCTTGGCTATTGAAAACGCTGTCTCGTGGTATCAATTAA
CTGTTGTATCATTGTCGCTATTGTTGAATATTTTCACATTATGCGCATGC
TCAAGTAAAAGTTATTTGTCCAAGCATAAGTTATTAATTCAATGTTTATC
GGCGTCCGATCTAATTTACGCCCTGTCCGAAATGTTATATGTTCATCGCC
GGTTTAAAGAGCACGAATGGCATCTTGGGGAAATCTTATGCCGTTTCAC

Coding sequence (CDS) from alignment at sc0000012:435425..435923

>TCONS_00001998 ID=TCONS_00001998|Name=TCONS_00001998|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000012:435425..435923 (Clytia hemisphaerica)
ATGGATATGATGAAGTGTAATATAACCAGCGATATCATCTCTAACGCTTC
ATTATGCGTTAATACTTCAACATTTCAACAACTCGAATACAGCAGCATGC
AACAAGATCCACAGATGAGATTGTTCTTGGCTATTGAAAACGCTGTCTCG
TGGTATCAATTAACTGTTGTATCATTGTCGCTATTGTTGAATATTTTCAC
ATTATGCGCATGCTCAAGTAAAAGTTATTTGTCCAAGCATAAGTTATTAA
TTCAATGTTTATCGGCGTCCGATCTAATTTACGCCCTGTCCGAAATGTTA
TATGTTCATCGCCGGTTTAAAGAGCACGAATGGCATCTTGGGGAAATCTT
ATGCCGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001036XLOC_001036Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001998-proteinTCONS_00001998-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001998-exon-sc0000012-1491911889:435425..435923TCONS_00001998-exon-sc0000012-1491911889:435425..435923Clytia hemisphaericaexon
TCONS_00001998-exon-sc0000012-1510915933:435425..435923TCONS_00001998-exon-sc0000012-1510915933:435425..435923Clytia hemisphaericaexon
TCONS_00001998-exon-sc0000012-1575043694:435425..435923TCONS_00001998-exon-sc0000012-1575043694:435425..435923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:435425..435923 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.147247	0.206182	0.127695	0	0.325903	0.406813	0.0844958	0.138934	0.0745487	0	0.282393	0.260094	0	0	0.173082	0.420808	0	0.394044	0.23445	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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