TCONS_00018928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018928
Unique NameTCONS_00018928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018928 ID=TCONS_00018928|Name=TCONS_00018928|organism=Clytia hemisphaerica|type=transcript|length=258bp
tatgggtagtagGAAGGTTGATAGTGATCATgctAGTTATCATATTCTTT
GTGAAATACTGTTAACAACACCGTCCCATAGAAGTATTGGTCATCCAAGT
ACAGGTTGCAGATGCAACGACGATTGACTCAAGATTCAGACATTTTTGAA
TGTTGACGGTCACTTCTGTTCTCTGCAGTGCCAGCAGAAAAGGACTGCTA
AAAGATGAGTGGGAACTGATGTATTAAAACTTTACGTGTATTATATCTAT
TTGACTCN
Run BLAST on NCBI

transcript from alignment at sc0000313:276931..277655+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018928 ID=TCONS_00018928|Name=TCONS_00018928|organism=Clytia hemisphaerica|type=transcript|length=725bp|location=Sequence derived from alignment at sc0000313:276931..277655+ (Clytia hemisphaerica)
tatgggtagtagGAAGGTTGATAGTGATCATGTAAGTATTAGTTTACCCC
GGCACTCTCTAAAACGTCTTGGCATTTTTATTTAAGATGGGCAAAATCAa
ttgataattttgttgtttttcttcaacttttagataaaaaaaagtaattt
taagcaaaacttgccccatggtaatggaattgaaattcagtaagtatact
tgatttcctctgttgtacttttagctttatctagggaaaccattgatttt
tgggttggaaatttcaaggtttcaacaacaaaaacatttaaaaaaaaaaa
aactttgacatgTGATATTTATAAATTGTGACTACCTGAAGGGCCATGAT
TTTGACCAGTCAGTGGATTATGATTTAGAAGGTGCAAGGCTTTGGTACTT
TTACACTCAAAATATTGTTTAATCCgtggaattttcattttgtatttaAA
CGGATTAGGGTAATTTCATATACAGATttacattttatatattttcaggc
tAGTTATCATATTCTTTGTGAAATACTGTTAACAACACCGTCCCATAGAA
GTATTGGTCATCCAAGTACAGGTTGCAGATGCAACGACGATTGACTCAAG
ATTCAGACATTTTTGAATGTTGACGGTCACTTCTGTTCTCTGCAGTGCCA
GCAGAAAAGGACTGCTAAAAGATGAGTGGGAACTGATGTATTAAAACTTT
ACGTGTATTATATCTATTTGACTCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010609XLOC_010609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018928-exon-sc0000313-1491911889:276931..276961TCONS_00018928-exon-sc0000313-1491911889:276931..276961Clytia hemisphaericaexon
TCONS_00018928-exon-sc0000313-1510915933:276931..276961TCONS_00018928-exon-sc0000313-1510915933:276931..276961Clytia hemisphaericaexon
TCONS_00018928-exon-sc0000313-1575043694:276931..276961TCONS_00018928-exon-sc0000313-1575043694:276931..276961Clytia hemisphaericaexon
TCONS_00018928-exon-sc0000313-1491911889:277429..277655TCONS_00018928-exon-sc0000313-1491911889:277429..277655Clytia hemisphaericaexon
TCONS_00018928-exon-sc0000313-1510915933:277429..277655TCONS_00018928-exon-sc0000313-1510915933:277429..277655Clytia hemisphaericaexon
TCONS_00018928-exon-sc0000313-1575043694:277429..277655TCONS_00018928-exon-sc0000313-1575043694:277429..277655Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:276931..277655 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.48099	0	0	0	1.16808	0	0	0	5.02509	0	4.95644	0	4.14808e-07	2.59759	0	4.84	3.00968	0	0	3.96509	0	5.31123	2.38908	2.97019	0	0	0	4.92391	2.39419	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top