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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001761 ID=TCONS_00001761|Name=TCONS_00001761|organism=Clytia hemisphaerica|type=transcript|length=2254bp CCACGGTTTTTggagttaaaaaaaaagaaaacaaaataacaaaCCAAAAT GGCGGCGAGAACTTGACGCAGCAAAAATTCTAAAGAAAGCAGGACTTTTT ATATTTCAACTTTAATTTTCTTATGTTTTTACAAGATGAAGGCAAATGTC TCTGCTCAAGATAAATCTTATAGTGACTTAGATCTTCCGTTTGAAAAACT CAATGTAAGCTATGATAATAATGAGGAAGACTCAAGAAAAGAAACGTTGA AATCAGCTGATTATCATCAGCCGCAAAGCAATACTGCAACTTCAACCAAA GAAACAATTTCAATTCACCAGAAAAGGCTCTCCAATGAAGATTTCGAGCA AGTTGGTCGCGTATACTGTTCAAAgaaaaaacgtaaacaaaaatcaaaat cattattgAGAGAAGCTAAACTTGTCTTACCCATCCAAAACTCGTCACCT GAAAATTCGACAAAGAAAACATCAccttcatcaaaacaaaaattgaaatc ctCATATAGGACTCGTGATTTGTTTGATAACTCAGAGGAGTATTGTGATT GTGATAATGAGACTTATGAAAAAACCAACTTATCGAATACAAATATACAC CAAACGGCGCCCGTCGCTACTTGTAGTACACAATATATGAACCAACAAAG CCATGGAGGGCCATCTCATGAACAGACTGATTCTGATCAACCGCCAAGTA ATTTAAATGAGCATGAACTAGCTTCATATTTTGAACAAATGTTATATATA CCGAAACCGATGTCCCTTATGGCGGAAATGATGTATGCCTGAAAAGACGA ATGGATGATGTTATGTTGTTCTATTTGTGATTATGCGTCAGCTTGTATGT CATGACGTTTCCCAAACCTTGTCGGGGCAAATGTATCGGAGGAAAGTGAC CACAGTTTTGAACAACCCGGACGGGGCTTATTCCGAATATTTGGAAAAGC TATCACATTTTTCTCCGAAGTTACCCCCAAAAAGGTATATGGTAAAAATG GAAGTTTCCTCAACCAATTAGCACTTTAAAAAGTAATTGAACGTGGATTT GGAAGTCTGTAATGTCAAAACTATGTACAATAGAACACTCCCTTCTCACT GACCcgttagaattttttcagccagtgggggtaaaaattaaAGACGGAAA CTCGATCAAGATTGATATCTTCATATGATTTATGGCTGTGGgtttgaatt tcattgttttcatgtcggaaaattcagtggggaggGTAAAATAACACGAT ATTTCGTAGTACATCTATCTGTAGACACGtgtttcgtccttcccaggact catcAGTGCGGCTAGACAGCTGTTATCACCAGAGTGTTCAAAACACTGAG TATTTCGTAGTatagatttgtttatttgattattttcagcaggGACAAAC CTTGAAGTATAATTTtacactggggacgatattttagcTAATTTTCCAAG TGGGAAGGAGTCcgccgggtctgtgagaagagggtgtaatATATAAAGGA TTTTTATCGTACTGTTCCTTAAGTGGGACGCAAACCGGCCAACATTTCGA CCAACatttccgccaaaatttgaTGTTGGTGGCATGTTTGTCGGTTTGCG CTGAGTAACCAACATGTTGTCCAACATTTCGACCAACATTTTAGTTTtcg aacgttttttttttttacgtttttcgaaTGCTTCTTCATTGGACGTCAAA AACAAATGAATGAACATTTCGTAATGTTGGCTGCTTGTTTTTTTAAATGC GCCACCGCAAACCGTACCAACGTGTTGGCCGAAAATGTTGGTAAAAAATG TTGGCCAATATGTTGGCCGGTTTGCGCCCCACTTTATCCCTTAATGTAAA TGCATTTCTTGACATTCCTAATCATTTTTTATAAACCTTTCTTTTAATAG CAGTGTTGAAATATTTAAATCTCTCATTAAtatttagttttagttttttt ttatccattttcaaCAACGACCCGTGGTATCCAATTATGAGTACAGCATG TCGTATTTACGGCTGTTTTTCCAAAAGTAAGACATTTCGGAAAGGGCAAA GGTATATCCATTTCAAAACCAAACTAAAGtatgtctcaatataatctgca gcggagCGAAAAAGGCTGTACATTTTTTCGGATACCAAATAAattgcgat tttgtgcttgttgaaaagaaatacaagaATGGAATGTTaccaaaaatata aattaactgattttcgttcgtccgttcgttcgtctgttaccagcttttct cggg Run BLAST on NCBI protein sequence of TCONS_00001761-protein >TCONS_00001761-protein ID=TCONS_00001761-protein|Name=TCONS_00001761-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MKANVSAQDKSYSDLDLPFEKLNVSYDNNEEDSRKETLKSADYHQPQSNT ATSTKETISIHQKRLSNEDFEQVGRVYCSKKKRKQKSKSLLREAKLVLPI QNSSPENSTKKTSPSSKQKLKSSYRTRDLFDNSEEYCDCDNETYEKTNLS NTNIHQTAPVATCSTQYMNQQSHGGPSHEQTDSDQPPSNLNEHELASYFE QMLYIPKPMSLMAEMMYA Run BLAST on NCBI transcript from alignment at sc0000012:141795..148643+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001761 ID=TCONS_00001761|Name=TCONS_00001761|organism=Clytia hemisphaerica|type=transcript|length=6849bp|location=Sequence derived from alignment at sc0000012:141795..148643+ (Clytia hemisphaerica) CCACGGTTTTTggagttaaaaaaaaagaaaacaaaataacaaaCCAAAAT
GGCGGCGAGAACTTGACGCAGCAAAAATTCTAAAGAAAGCAGGACTTTTT
ATATTTCAACTTTAATTTTCTTATGTTTTTACAAGATGAAGGCAAATGTC
TCTGCTCAAGATAAATCTTATAGTGACTTAGATCTTCCGTTTGAAAAACT
CAATGTAAGCTATGATAATAATGAGGAAGACTCAAGAAAAGAAACGTTGA
AATCAGCTGATTATCATCAGCCGCAAAGCAATACTGCAACTTCAACCAAA
GAAACAATTTCAATTCACCAGAAAAGGTAAATATAAACTGTTTATATGTT
TTTACAGATAATTAagatttagtttttgttttgtttttggtgTTTGGTGC
ATAGGACTGAAGATAAGTTTTAGGTTTGAATAGTCGTTTTTGTTGTGGGA
GAATGTGACATATTTACGAGGACGCCCTCCCTGCGCTCCAGAAACGTCCG
GAGCAAAAAGTGCCGTTTTTTTCATGCTCCGGAACACCGGAAGATTCCGG
AGCACTTCCGGTGTTCCGGAGGTAGATTTTCGGCGATTGGTCTATGCACC
GGACAGTCAGGATTAAAACTGCGCTtaaataggaacaaatttttcgattt
cacaaatattcttatctaggcatattttttattctaaggttagaatattt
tagagatttttattttacactaaaactaaaaaaagtcgCATGTATCAATT
AttatctatgttttcatttaggTATTTTCTAACTGTGTCCCAAATTTCAG
AAAGATTCATCAATGCAGTATTGAATTATTGCATTTTAAAGTTTCCATGC
AGATTCCACTGCTTATTAATGGTCTATTTACACATCAAATCCCGTTTTTT
AGtaaagaaagccttaaaatgttcatatttaggatattttttacaaaagc
taAGATTCTCCACCCTTCCACCCACCAAAAGtgctgatttttggaaaaag
aaaccACTTTGCattaccgtgagaggtcctaaagccgacagcccagccta
attccgaccccccgaataactgttatgaaaaaaaattctatgtttacaaa
cattccctctccaagttgaacgataaactattgctagaactctcgaaaca
aaacatctaacaagatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCG
CATAactttgtgaaaaaagttttgatttttattaaatttctaaactttgt
gaaaaatgttttgatcttTATTAAATTTCTAAACCAGGTATGATTTTAGT
ATGCCTGACCAAATTCTAATAACACTTTGTCACAATTCTTCAGGTGCTCC
TACTAGAAATTCACACTCTAGAAATTGTAACTGACTGCCATTAACAGTTA
AGCTAGTCACATACTCTAGAAAAAACTTTGCGAAAAGTAGTTCAGTCTCT
ATAAAATTTCAACAGAAACTGTATTTTAGTAAGGTAGGTTACCCTTTTAT
GGACACCCCCTTTTATGGACACCCCCTATTATGGACAAACCCTTCTAAAA
GATTACAGTACACGTAGTGTTCATATTATATCATGATAATTTatataaag
attttatttttttatttttgataacatAAGTAAAGAAGTAAAAATCAGAC
AGAAAATGTTGGGAAAAAAATCGACATGATAAACTTTAAAATGTCTCCCA
TGTAGTAATGGACTTGTGGATCTGTATTGTCTTCTAACATCATCAAAGTA
ATTTATTTGACTAATGATTGGTGATGAAATTATGGTAAAATAGTGTTTTA
AATGGGCGGGTCCACCCATTCTCTAACATGGATGTTTGTTACCTATTATG
AACAGGTGGGTGTttccaaccaaaaaagcccaaaacATGCGCCAAGGTCa
caaaacacaatctgcgtccagatgtgtgaacaataaaaaaataatatgtg
GTTGTCATTTTATCCAGTGTTCTGGCGGCAATCAAATATATGTTTCGTTC
GTgtcaaaaatcttcttaaaattgaGTCAGTCAGTCGGTTGGTAGTAAAT
CTAGTcgggttttttggaaaattgtttcaaagtatagtttttaatattta
ttcgcTCGCTTGATGAAAAATTCTGACAATTTTCTGACTCTTCCGGCATT
TTTGTCTGCCAAGTTGGTTGGATTGGTTGGCCGACGCAAACAGCCAAcgc
gaacagaacatatttttgattgtctCCCTCTGCTGTTGTTGTAGCCACTT
GTAgccaaacacgtccaagtccaaaaacatGATTGCATcctgtctttatc
aaatttagacagtagctgtacttttttatactttatcatattgcaataac
attataacatgATCAATTCCACCTACAGCTAGAAGCAAACAggaaaaata
tgtttatttATTGCAAAAAGCTGAAATTCTTGGAAATTCAACTaggtaaa
aataacaaaaacttgagcaaattgcTAAACCttcaacaaatataaaaaag
gatctccttgatgaaaatcatgtgtttgatttgccaagtttcaaagtcat
tataaaaaagatatgacagaaattgaagcttgcaataTGCATTTACTTCC
TGCATTTACACTGAAAACACTGAGCCGCTTGAGCCGTCATCTTGAAACAC
CATATCtatgttttctaaaaacaacacacgctaaaagtacactaaaagtt
aacccgatcggatataaactttagaaatcggggaaacacggCTTACGTAA
TGAGCATATCGGggtaacatgttttttttgcttttggtcTGATGATGGTG
AAAAAGCCTATTTTAATAATCAGCTGTTGGCTGACTAATTATTTTTTAAC
CAAATTTGCGCTGAGACGCTCATCATGCTGAGAAAAAATCACACTTGTCC
CATACATGACGGAgtgaaaaactcaaaatcaGTGATAtctacaaaaaatg
ttttgtatttCCTGAAGTCACTTTTATGTATCAAAATGCACTAAAAGTTT
TACTATACATATCTTTCGGGATATTTCACACTTTGTGTGTCGCGTACGGG
ACAAAATTAGGATTTCCATTTGTCCCGTATAcgacaaaatttgaaattcc
ttAAATTTAACAAGAAAATTCTATTTTGGCCAAATCTTTTGCATTGATTG
GTAAATCTACACCATATTGCTTCtttaaaatatccaaaaaattttaagtt
agtTGTATAAATGAAAGTTATTAAGGGTTAAAGAGTGATTTCCCCCGATT
CAAGTACAATAGTGTATACCACAGATAGACTCTGATAGACCTATTTTAGA
ATGaaaaagttaagtttttctgaaagtcaAAAGGTTAGTGAAGATTTCCA
AAAAGTTATTTGATTCTGAATTACTATTTTCTCTTCAAATTGAGAGGCTG
TTAACATAGCTACAATTTTGTCGCGTACGGGACAAATTTTTAGCTGTAAA
ACCcgtggaaaaattaaaaacaggaAAACGGCTTGTAAAGTAATGGCTCT
TTTGAATAGTTTTACCAGACGATATCTTTTTTGTACAGTAAATGCTTTCA
GTTAACATTCTGCATACATCACACTTTCCAAGGCTTTCTTTCCAAATATT
GGTATTAATTAAttgatttaaaagattttcaaaaactttgtctgaaaatt
gaagaaaatttgaaaaaatttgtgttTATGTCACAGCGTGTCAGTGACTG
CTTGACCACCCAGATTATCATTCACTTAATGAAAAAGGGGAGGCTGAAAA
TTATAGCCGTGGAAAGATTTAGCCAATTTTGATccaaagatttaaaaaga
ttttctactTTCAAATCTTTCAGAACTTTTTCTAAATGCTAGTAggtgct
gtggtatagtggtcattgaccttggttgctgcacaggtgactgaggttcg
attcccactcgcaacggttcacttggcaagtgaatgaaccttcgcccggg
tcaacccatgccatgtgaggggaattggttagtcagtccaaggtgctgac
ggggcgctcattgaaagcgtctatagttgcgaaataaggcctcaaagcct
cctgcaactcaacgcatagaaaaatagaaatagaaaaattttaatgGGTA
TTTGTGCCAGCTAGTACTGTCACAGAAACCTTTTTTGAGTACAGTCATTC
aagctcaaaaatattttattcaacTGGTAGACCAAAGGTGGTGAATAATT
TGATCTTAACTCTGTCATCATTACTTGTCATTCATTATAAACCTACACCG
ACATCTCTTTCTTAATGAGTAGTATTTAGTTAATGGGCCATTAAGAAACA
AGTAAACAGTAAATCTTTCGGGGAGCCGTGAGTTTGTAGATTTTTCCTTT
AGATAGAAcatttaaatttgttttataattGTATATTTGTTTAATATACT
AAAATATTGGCAAAGTGCAATACCAATAGAGGTATTTTCTTGCACTTATT
ATGTCAGGAAACCTTGATGTCGTTGATGactgatttgatgaaaaagttgG
ATACCACTCAAAACATGagtttttttttccagaaataggGAACCTTATCT
AGGTACCTCGGATCAAATTTTATTTAGGATGCGGGGGTGTTGTCCATTAT
AGAATCAGTATATCTATTTAAACAATCTATTTATGTTCTAAACCTCTTTC
ATTTTCAGGCTCTCCAATGAAGATTTCGAGCAAGTTGGTCGCGTATACTG
TTCAAAgaaaaaacgtaaacaaaaatcaaaatcattattgAGAGAAGCTA
AACTTGTCTTACCCATCCAAAACTCGTCACCTGAAAATTCGACAAAGAAA
ACATCAccttcatcaaaacaaaaattgaaatcctCATATAGGACTCGTGA
TTTGTTTGATAACTCAGAGGAGTATTGTGATTGTGATAATGAGACTTATG
AAAAAACCAACTTATCGAATACAAATATACACCAAACGGCGCCCGTCGCT
ACTTGTAGTACACAATATATGAACCAACAAAGCCATGGAGGGCCATCTCA
TGAACAGACTGATTCTGATCAACCGCCAAGTAATTTAAATGAGCATGAAC
TAGCTTCATATTTTGAACAAATGTTATATATACCGAAACCGATGTCCCTT
ATGGCGGAAATGATGTATGCCTGAAAAGACGAATGGATGATGTTATGTTG
TTCTATTTGTGATTATGCGTCAGCTTGTATGTCATGACGTTTCCCAAACC
TTGTCGGGGCAAATGTATCGGAGGAAAGTGACCACAGTTTTGAACAACCC
GGACGGGGCTTATTCCGAATATTTGGAAAAGCTATCACATTTTTCTCCGA
AGTTACCCCCAAAAAGGTATATGGTAAAAATGGAAGTTTCCTCAACCAAT
TAGCACTTTAAAAAGTAATTGAACGTGGATTTGGAAGTCTGTAATGTCAA
AACTATGTACAATAGAACACTCCCTTCTCACTGACCcgttagaatttttt
cagccagtgggggtaaaaattaaAGACGGAAACTCGATCAAGATTGATAT
CTTCATATGATTTATGGCTGTGGgtttgaatttcattgttttcatgtcgg
aaaattcagtggggaggGTAAAATAACACGATATTTCGTAGTACATCTAT
CTGTAGACACGtgtttcgtccttcccaggactcatcAGTGCGGCTAGACA
GCTGTTATCACCAGAGTGTTCAAAACACTGAGTATTTCGTAGTatagatt
tgtttatttgattattttcagcaggGACAAACCTTGAAGTATAATTTtac
actggggacgatattttagcTAATTTTCCAAGTGGGAAGGAGTCcgccgg
gtctgtgagaagagggtgtaatATATAAAGGATTTTTATCGTACTGTTCC
TTAAGTGGGACGCAAACCGGCCAACATTTCGACCAACATCCACTGACCAA
CATGTTGGCCAACAACGTTGATCGGTTTGCGGTAGGCGCCAACATGctcg
agaagaaaaaaaatcaatatttgttaaatatttgATAAATGTTGGTCAac
atttccgccaaaatttgaTGTTGGTGGCATGTTTGTCGGTTTGCGCTGAG
TAACCAACATGTTGTCCAACATTTCGACCAACATTTTAGTTTtcgaacgt
tttttttttttacgtttttcgaaTGCTTCTTCATTGGACGTCAAAAACAA
ATGAATGAACATTTCGTAATGTTGGCTGCTTGTTTTTTTAAATGCGCCAC
CGCAAACCGTACCAACGTGTTGGCCGAAAATGTTGGTAAAAAATGTTGGC
CAATATGTTGGCCGGTTTGCGCCCCACTTTATCCCTTAATGTAAATGCAT
TTCTTGACATTCCTAATCATTTTTTATAAACCTTTCTTTTAATAGCAGTG
TTGAAATATTTAAATCTCTCATTAAtatttagttttagtttttttttatc
cattttcaaCAACGACCCGTGGTATCCAATTATGAGTACAGCATGTCGTA
TTTACGGCTGTTTTTCCAAAAGTAAGACATTTCGGAAAGGGCAAAGGTAT
ATCCATTTCAAAACCAAACTAAAGtatgtctcaatataatctgcagcgga
gCGAAAAAGGCTGTACATTTTTTCGGATACCAAATAAattgcgattttgt
gcttgttgaaaagaaatacaagaATGGAATGTTaccaaaaatataaatta
actgattttcgttcgtccgttcgttcgtctgttaccagcttttctcggg Coding sequence (CDS) from alignment at sc0000012:141795..148643+ >TCONS_00001761 ID=TCONS_00001761|Name=TCONS_00001761|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at sc0000012:141795..148643+ (Clytia hemisphaerica) ATGAAGGCAAATGTCTCTGCTCAAGATAAATCTTATAGTGACTTAGATCT TCCGTTTGAAAAACTCAATGTAAGCTATGATAATAATGAGGAAGACTCAA GAAAAGAAACGTTGAAATCAGCTGATTATCATCAGCCGCAAAGCAATACT GCAACTTCAACCAAAGAAACAATTTCAATTCACCAGAAAAGGCTCTCCAA TGAAGATTTCGAGCAAGTTGGTCGCGTATACTGTTCAAAgaaaaaacgta aacaaaaatcaaaatcattattgAGAGAAGCTAAACTTGTCTTACCCATC CAAAACTCGTCACCTGAAAATTCGACAAAGAAAACATCAccttcatcaaa acaaaaattgaaatcctCATATAGGACTCGTGATTTGTTTGATAACTCAG AGGAGTATTGTGATTGTGATAATGAGACTTATGAAAAAACCAACTTATCG AATACAAATATACACCAAACGGCGCCCGTCGCTACTTGTAGTACACAATA TATGAACCAACAAAGCCATGGAGGGCCATCTCATGAACAGACTGATTCTG ATCAACCGCCAAGTAATTTAAATGAGCATGAACTAGCTTCATATTTTGAA CAAATGTTATATATACCGAAACCGATGTCCCTTATGGCGGAAATGATGTA TGCCTGAATGAAGGCAAATGTCTCTGCTCAAGATAAATCTTATAGTGACT TAGATCTTCCGTTTGAAAAACTCAATGTAAGCTATGATAATAATGAGGAA GACTCAAGAAAAGAAACGTTGAAATCAGCTGATTATCATCAGCCGCAAAG CAATACTGCAACTTCAACCAAAGAAACAATTTCAATTCACCAGAAAAGGC TCTCCAATGAAGATTTCGAGCAAGTTGGTCGCGTATACTGTTCAAAgaaa aaacgtaaacaaaaatcaaaatcattattgAGAGAAGCTAAACTTGTCTT ACCCATCCAAAACTCGTCACCTGAAAATTCGACAAAGAAAACATCAcctt catcaaaacaaaaattgaaatcctCATATAGGACTCGTGATTTGTTTGAT AACTCAGAGGAGTATTGTGATTGTGATAATGAGACTTATGAAAAAACCAA CTTATCGAATACAAATATACACCAAACGGCGCCCGTCGCTACTTGTAGTA CACAATATATGAACCAACAAAGCCATGGAGGGCCATCTCATGAACAGACT GATTCTGATCAACCGCCAAGTAATTTAAATGAGCATGAACTAGCTTCATA TTTTGAACAAATGTTATATATACCGAAACCGATGTCCCTTATGGCGGAAA TGATGTATGCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001761-exon-sc0000012-1491911889:141795..142120 | TCONS_00001761-exon-sc0000012-1491911889:141795..142120 | Clytia hemisphaerica | exon |
TCONS_00001761-exon-sc0000012-1510915933:141795..142120 | TCONS_00001761-exon-sc0000012-1510915933:141795..142120 | Clytia hemisphaerica | exon |
TCONS_00001761-exon-sc0000012-1575043694:141795..142120 | TCONS_00001761-exon-sc0000012-1575043694:141795..142120 | Clytia hemisphaerica | exon |
TCONS_00001761-exon-sc0000012-1491911889:146603..147831 | TCONS_00001761-exon-sc0000012-1491911889:146603..147831 | Clytia hemisphaerica | exon |
TCONS_00001761-exon-sc0000012-1510915933:146603..147831 | TCONS_00001761-exon-sc0000012-1510915933:146603..147831 | Clytia hemisphaerica | exon |
TCONS_00001761-exon-sc0000012-1575043694:146603..147831 | TCONS_00001761-exon-sc0000012-1575043694:146603..147831 | Clytia hemisphaerica | exon |
TCONS_00001761-exon-sc0000012-1491911889:147945..148643 | TCONS_00001761-exon-sc0000012-1491911889:147945..148643 | Clytia hemisphaerica | exon |
TCONS_00001761-exon-sc0000012-1510915933:147945..148643 | TCONS_00001761-exon-sc0000012-1510915933:147945..148643 | Clytia hemisphaerica | exon |
TCONS_00001761-exon-sc0000012-1575043694:147945..148643 | TCONS_00001761-exon-sc0000012-1575043694:147945..148643 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000012 | supercontig | sc0000012:141795..148643 + |
Blast
The following BLAST results are available for this feature:
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