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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018125 ID=TCONS_00018125|Name=TCONS_00018125|organism=Clytia hemisphaerica|type=transcript|length=2306bp
ggccatattaTGAACAGAAAATTCTCTcaaccacgaaattaaattcccgc
taaatttcagaattttgagctgtgaaccgggaatttaaattccgcgaaaa
ttttttccctttAAGTACGCTACGNcagaattttgagctgtgaaccgcga
atttaaattccgcgaaaatttcttcccttaaagtacgctacgatattatc
gtgagatacactctggtacacagAGTAGCGATCATACATACAGAAAATTA
GCACAATCGATCAcaatcgattttaatcgataacAATTGATGGCTAATCG
Ataaggccaggcccaattgatagtttggttcgtgtcctccgaccgactct
aagtttttgagaaaaagtgtttcactttAAGAACAACCAAATAATTTTTA
CCTCCTTCTCACATGATAACTACTATCTCTGCGGTTCTTTCTATAAACAA
CATCCACTTTGCGCACAGAAAATGTCCCGGTGTAACCcgtacttaaaaac
aaatatttagcACCTAAAAGCAGAGAGTCACAGCTGTATTCCTTTAAGCA
CGCGCTGTGAACGCCTTAAACTCCAACTAGAAGTTATCTTGCGATCCCGG
CGCGTGCCTTAATGGATTCGGGCTTTAGGCTATTTCTTTACATTCGCGTT
TGGATTCCAGGATTACACGATTGCttgaggaatttcaaaaattgaggttt
ttggtaggaaaatgaaaaaaaggttccAGTTTTAGCtaacgaccgaccga
cccatttttcaaagcttctaggacacgaaccaaacaatcaattgggcctg
gcctaataatcgaatttaataGATGAAAATCGATACCaattgataataaa
attttacgttCCTATCGATTGGCCATCGATTAGtaatcgatctatcatcg
attaCGAACAACTTTTATCAATTGACATCGATTAAATCGACAATCGATGT
TATCGATTGGGTACGCCTGGTTTAAACGACAAATATTCACTAGAATCTGA
TAAACACTAGAATCTGATTGTTGTTTACGTGTCGTATGCAATTTTAAGGG
CATTTATTAGatataccgtgaagtcaggtaacttgcatcagtggagggaa
acttgtaTANTCTATTAGatataccgtgaagtcaggtaacttgcatcagt
ggagggaaacttgtaTAGCtgtcaaatgaatgacctggctggtcattaaa
atacaaagtttaatcaaaacaaaaatggtagagtagagctgcgagcagag
ctgcgtagttcatttgttttgaaattttgctgctttttgATTGgccagtc
atttgatggctatgcagctttccctccactgatagatgcaagttacccga
cttcacagtatAAAGTGTAGTGAAAACTTTTTCAGAGACAACATTATATA
CGTCTGGTCTGACACTTCCTTGAAAACTTGATTGTTGTATATAATATAtt
gaaactttttaaacttAAGTAACCCAAAATCTTTTACTCATGGACATACC
TTTTATACCTTTTTTGTGATGACCGCATGCCTTTTTCATGGTAATCTTGT
TTTTTCGAAAGTTACAACCACCATTTTGGATTTTCCAACGTGAGACTAAC
GTGagactgaaaaaatttttgaatttgccGCGCCCTCTCATCGACTTGAA
AAAGGACTGGAATCTAGACAATTTTACTGCCGCGCTATGAAAAATGACAT
AATGCTATTAAATACGGTGAGATGATTGGCTTAAGAGAGGCGGGAATGCT
TAAAGATGGTAGACGCAGTTACGCATGGTATACATAACAGGTTAGCAGTT
ACACTTGCTTTTGCTCTATGGCTATGCTCACTTCTATTGATTCGTCAATC
CGTAATCATGTATCATTTCTGTGGAAGCTGGTTCTTGGTGATAGAGTGAG
GCCTTTTCATTAATCAGGTAAGGGATATATTCTTATATTAGAACACAACT
GGTTTTAGAAtaacaaatgacttttttttaatccaTTTAGTTTAGcagac
agtgtcaatcgaacgaatcgaacgccgaatcaatcgaatgcaattgaatg
caatcaaataattgcaattcaattgtcgaatgcaatcgaatcgcaatcga
atattacccaggatttgctgttcgattgcttcgattacgttcgattgtat
tcgattacgttaaattgtatttgattacgtttcattgattcaattgtatt
agattttattcgctttagtaTGGTACTTCAAGCACTCGGccgtccacgct
aaaaagctctaacagagtgatccaatttaatttaatcgcaatcaaactca
tagaac Run BLAST on NCBI transcript from alignment at sc0000290:52384..54824+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018125 ID=TCONS_00018125|Name=TCONS_00018125|organism=Clytia hemisphaerica|type=transcript|length=2441bp|location=Sequence derived from alignment at sc0000290:52384..54824+ (Clytia hemisphaerica)
ggccatattaTGAACAGAAAATTCTCTcaaccacgaaattaaattcccgc
taaatttcagaattttgagctgtgaaccgggaatttaaattccgcgaaaa
ttttttccctttAAGTACGCTACGNcagaattttgagctgtgaaccgcga
atttaaattccgcgaaaatttcttcccttaaagtacgctacgatattatc
gtgagatacactctggtacacagAGTAGCGATCATACATACAGAAAATTA
GCACAATCGATCAcaatcgattttaatcgataacAATTGATGGCTAATCG
Ataaggccaggcccaattgatagtttggttcgtgtcctccgaccgactct
aagtttttgagaaaaagtgtttcactttAAGAACAACCAAATAATTTTTA
CCTCCTTCTCACATGATAACTACTATCTCTGCGGTTCTTTCTATAAACAA
CATCCACTTTGCGCACAGAAAATGTCCCGGTGTAACCcgtacttaaaaac
aaatatttagcACCTAAAAGCAGAGAGTCACAGCTGTATTCCTTTAAGCA
CGCGCTGTGAACGCCTTAAACTCCAACTAGAAGTTATCTTGCGATCCCGG
CGCGTGCCTTAATGGATTCGGGCTTTAGGCTATTTCTTTACATTCGCGTT
TGGATTCCAGGATTACACGATTGCttgaggaatttcaaaaattgaggttt
ttggtaggaaaatgaaaaaaaggttccAGTTTTAGCtaacgaccgaccga
cccatttttcaaagcttctaggacacgaaccaaacaatcaattgggcctg
gcctaataatcgaatttaataGATGAAAATCGATACCaattgataataaa
attttacgttCCTATCGATTGGCCATCGATTAGtaatcgatctatcatcg
attaCGAACAACTTTTATCAATTGACATCGATTAAATCGACAATCGATGT
TATCGATTGGGTACGCCTGGTTTAAACGACAAATATTCACTAGAATCTGA
TAAACACTAGAATCTGATTGTTGTTTACGTGTCGTATGCAATTTTAAGGG
CATTTATTAGatataccgtgaagtcaggtaacttgcatcagtggagggaa
acttgtaTANTCTATTAGatataccgtgaagtcaggtaacttgcatcagt
ggagggaaacttgtaTAGCtgtcaaatgaatgacctggctggtcattaaa
atacaaagtttaatcaaaacaaaaatggtagagtagagctgcgagcagag
ctgcgtagttcatttgttttgaaattttgctgctttttgATTGgccagtc
atttgatggctatgcagctttccctccactgatagatgcaagttacccga
cttcacagtatAAAGTGTAGTGAAAACTTTTTCAGAGACAACATTATATA
CGTCTGGTCTGACACTTCCTTGAAAACTTGATTGTTGTATATAATATAtt
gaaactttttaaacttAAGTAACCCAAAATCTTTTACTCATGGACATACC
TTTTATACCTTTTTTGTGATGACCGCATGCCTTTTTCATGGTAATCTTGT
TTTTTCGAAAGTTACAACCACCATTTTGGATTTTCCAACATGAGACTAAC
GTGagactgaaaaaatttttgaatttgccGCGCCCTCTCATCGACTTGAA
AAAGGACTGGAATCTAGACAATTTTACTGCCGCGCTATGAAAAATGACAT
AATGCTATCAAATACGGTGAGANCGTGAGACTAACGTGagactgaaaaaa
tttttgaatttgccGCGCCCTCTCATCGACTTGAAAAAGGACTGGAATCT
AGACAATTTTACTGCCGCGCTATGAAAAATGACATAATGCTATTAAATAC
GGTGAGATGATTGGCTTAAGAGAGGCGGGAATGCTTAAAGATGGTAGACG
CAGTTACGCATGGTATACATAACAGGTTAGCAGTTACACTTGCTTTTGCT
CTATGGCTATGCTCACTTCTATTGATTCGTCAATCCGTAATCATGTATCA
TTTCTGTGGAAGCTGGTTCTTGGTGATAGAGTGAGGCCTTTTCATTAATC
AGGTAAGGGATATATTCTTATATTAGAACACAACTGGTTTTAGAAtaaca
aatgacttttttttaatccaTTTAGTTTAGcagacagtgtcaatcgaacg
aatcgaacgccgaatcaatcgaatgcaattgaatgcaatcaaataattgc
aattcaattgtcgaatgcaatcgaatcgcaatcgaatattacccaggatt
tgctgttcgattgcttcgattacgttcgattgtattcgattacgttaaat
tgtatttgattacgtttcattgattcaattgtattagattttattcgctt
tagtaTGGTACTTCAAGCACTCGGccgtccacgctaaaaagctctaacag
agtgatccaatttaatttaatcgcaatcaaactcatagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018125-exon-sc0000290-1491911889:52384..53972 | TCONS_00018125-exon-sc0000290-1491911889:52384..53972 | Clytia hemisphaerica | exon |
| TCONS_00018125-exon-sc0000290-1510915933:52384..53972 | TCONS_00018125-exon-sc0000290-1510915933:52384..53972 | Clytia hemisphaerica | exon |
| TCONS_00018125-exon-sc0000290-1575043694:52384..53972 | TCONS_00018125-exon-sc0000290-1575043694:52384..53972 | Clytia hemisphaerica | exon |
| TCONS_00018125-exon-sc0000290-1491911889:54108..54824 | TCONS_00018125-exon-sc0000290-1491911889:54108..54824 | Clytia hemisphaerica | exon |
| TCONS_00018125-exon-sc0000290-1510915933:54108..54824 | TCONS_00018125-exon-sc0000290-1510915933:54108..54824 | Clytia hemisphaerica | exon |
| TCONS_00018125-exon-sc0000290-1575043694:54108..54824 | TCONS_00018125-exon-sc0000290-1575043694:54108..54824 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000290 | supercontig | sc0000290:52384..54824 + |
Blast
The following BLAST results are available for this feature:
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