TCONS_00017970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017970
Unique NameTCONS_00017970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017970 ID=TCONS_00017970|Name=TCONS_00017970|organism=Clytia hemisphaerica|type=transcript|length=555bp
TAGACATCTATTACAAGAACTGTGTGTGGCACAATTTGTCAGTAACACAA
GCCATCTGTCAACGGAAGAAGGCAAAATGAGGATATTGACAGGCCCTAAC
GCAAGTGGGAAAAGTGTTTATATGAAACAGGTTGGATTGATCGTCTACAT
GGCGCACATTGGGAGTTTTGTTCCGGCAgtgtcagcaaaaatcagtatCA
AGAGTGGTATTTATACGAGANTCGATGAGTTCGGTAAAGGTACTTCTGCG
actGATGGGTTAGCTCTCTTAGCTTCAGTTTTACAATTTTGGTCTGATGA
AAACAATCAAAGGCCCATGGTCCTGGTTTCCactcattttcatcaaatac
GGAAAACGGTTTCTCCATCAAGCTATGTTAAATACCAGACACTAGATGTC
ATGCATGGAGAGGACGAAGAATTGGTCTTTTTGTACTCTTTGAAAGAAGG
CTATGTTGAATACAGCTATGCAGCTCACGTCGCCCGGTCCGTTGGAATAC
AGGCTGATATCGTACAACGAGCTAAAGAGATTACAGATTGTATACTGAAA
GAACA
Run BLAST on NCBI

transcript from alignment at sc0000282:98556..104353+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017970 ID=TCONS_00017970|Name=TCONS_00017970|organism=Clytia hemisphaerica|type=transcript|length=5798bp|location=Sequence derived from alignment at sc0000282:98556..104353+ (Clytia hemisphaerica)
TAGACATCTATTACAAGAACTGTGTGTGGCACAATTTGTCAGTAACACAA
GCCATCTGTCAACGGAAGAAGGCAAAATGAGGATATTGACAGGCCCTAAC
GCAAGTGGGAAAAGTGTTTATATGAAACAGGTCAGTTGGAAAATTGATTG
TGGTTTTTTATGTTACATTGTCGGGGAAAGTAATGTCGGAGGAAAATGAC
GAAagttttgagggggtgacgaaatctttcgacattttatcacccgtTTT
GCATGGTTTTTCATGTGATATTTTAACCTACTCTCTTATTAATGGCTGAA
ATGTCGTAATTTAGtaaaacatgaaaataacaacctcatcggcccttttt
acgccggccccttttacgccgacccttattacgccacagcctaattttgg
gcttacgccaattagggccgttaataacgccaaaatttgtaaaaatggct
acatatgcttcaaattagtaacTAGTGActgaaaatttacattaaaatgt
cattttttagtagtaaactgttgaaaattccatcgaaaatcactgatttt
caaatatattaaatatttcactgaagttttaaatattgagtaaaacaatg
gataattttcgtcttcgaatcatacccaaaatcctttaaattgagaaata
attaacgccgcttttaggttaaaattgcaaaattttggccttttcaacgc
tggcccttattacgccaagagcccaaaaaaaaaacgccaataagggccgg
tgtaaaaaggtcCGATAAGGTATATTAAGGTTTTTGTTTACAGTAGCCCG
CCCGCCTCAGAGaaatattaaaacaaatttttttgccactGTCATGTAAC
TACAATGAaaagtttcaagaattttctgcaACTGTTTCTGactagcaact
ttttcatcaaattgacactttttgtgtgcttcatttttcaaatgttttcg
gCCCCAGACTATTAGCTTTCCGATTGTCGCTGGATTTAATTGTGGGTGAT
ATGGAATGGGAAGGTCCAAGAGTTTCTAGCACAAGaaaacatacacgttt
tttttaagaaactagttttaccaagcagcctcaatgtttcttaagaaatc
ggcctttggagccttaaatgtttcttacatgtttctaaactttttgacat
aatcagcctgcatgcaaagaaaaaaaaacatttgttttgattggaaggtt
cttaaaaaaaccgaattaaaaaatgttattttctcattctcagcctcagc
atgtttcttagatgtttcttagtttttaggtattctgagcctcatgtttc
ttaaaagtgtgtttcttaaaaaaataaatgtatgATCACTTTAACCGCTT
AACTTATACTCGCGAAATTATGCAAATGATTAGGTGACCGTCATCAATTT
CTTTAACTTTCAGGTTGGATTGATCGTCTACATGGCGCACATTGGGAGTT
TTGTTCCGGCAgtgtcagcaaaaatcagtatCAAGAGTGGTATTTATACG
AGANTCGATGAGTTCGGTAAAGGTACTTCTGCGGTATGTTTTCCTTTgtc
tttttctgaccaatcaaATTCTTTCTAATTCATTGTAATAAAATAGACAA
TTAAAGTTATGATTCAAAAAACATCTCGACGACTTCTATACgcactgatg
atgttttttattaaaacgaAAAGCTTATGCTAAAAAATATTTGTCGAAAT
GGGCAATATTCATGATTGATATCTGTGGTCGCATGCCCAAACCTTCCGCT
AGTGTAGTAGTTGGTGGATTCCAAAACACTATCAATGTGGAGATGGATTT
CTCCCAATTCACCGTCTGTGACCAGTCAGTAGACAATAATTCACTTCCAG
CTCTACCGAGTTGCATTTGAGTCCTCGGGTTCCACATGGACCCGTACctc
aatggtagagcaaatgGCCGCGAATGacatggttgtgagttcgagtttcg
tcggatccgttggttttccaacggttctagtggctggtcagaaaacaata
tgagagcgactgtattcacttcatttgtcgaaaaatgtttttttgaatcA
TATCtttctaatttaataattctagtattaaaaaataaattgctggttca
acaggggggggggtcaagtaTTTAGTACATTTATGTACATCTAGTACatg
accgtagtacagtggtagagcatccggctacggttcgcaaggttgtgggt
tcaacccacagccgggtcataccaaagattcccaaaaatggtacttgatg
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAgtgtcagcaaaaatcagt
atCAAGAGTGGTATTTATACAAGGATTCACACACGAGAAACTGTCTCTGT
ACCTTTGTCCACCTTCATGATTGATTTGAATCAGGTAAGTGCGGCCAGAA
AAAAGCGagtatgtatttgcacttttgaggacagtTGGAgggactgaagc
gatttggaataacccgcagttttgacccgcgaGTTCGAGCGCGttaaaaa
tgctgatttaccgttgtcctcagctggtcaggatctagtcaagaTAGAAC
CTTACCGTCCCTTCGCAGAAAAACGCACATACGGTAAAGTGTGCGGGAAG
GGTGGTAGTTTTTTGGTAAGTGTGGCCAGAGAAAGCGTGCGGGAAGTGGT
GGTAGTTTTGTCTGACCAGGATAAGGCATAGGGCCTGAACAGTCGCACAT
CAGACATTGTCCGACcagaaaattataattttcaattttttaatacaaaa
ttaAGCATTGGAAACCAACGTTATGTCCGTGTAGAATATGTAAAGTGTAT
ATCGATGGTGTTGGCTTTATTTAAGAACTATGTAAATAGGTTGACTTGTA
TTAGCCTAGTAGCTATTTGTTTTTATGTCAACGATAAATAACAATTACAG
ACAAACCAACAGCACTACCCCCGCCTCAAAGATGTGTACTCTTAAACGGG
GGTGGGGGGTTCGANagctatcgaaagaggagccttcgggtcgcttccga
ctgcggtcgcagacttactacttactacATGAACCCAGGACACtttcaac
agggggggggggtcaagcagaaCCAATGATTCTTTCTACGGTGATGATCT
ATCTTCATGACCCAGTGTACTAACTACCAAAAATCGAGCTTTTTTGGCAA
AAGAAATGGGGGTGgtgtaaattgaaatttgacCTAAAAATCAGTTAATA
CATTGTGTACTAAGTGAAAAGGCGTGGTGGTCcttttcaaaattatcaaa
aatcagTCAGTACTCATAGTTTTCCAGagtaactgcttgacccccctgGT
CTCAATGTTATTGATATTTGGATTCTGGAAGCAACAAGGTTAAGATTTAC
TACCTGCTACCAAGAAAAGGTTTCCTCAGCTTTAGGAAAACCTTGTTTCt
tcttgtttaaatttttttttggacgtTTTGAAGCCTTCCACCCTTTAATT
TATCAATCTTAAccctcaaactttctttctatagactGATGGGTTAGCTC
TCTTAGCTTCAGTTTTACAATTTTGGTCTGATGAAAACAATCAAAGGCCC
ATGGTCCTGGTTTCCactcattttcatcaaatacGGAAAACGGTTTCTCC
ATCAAGCTATGTTAAATACCAGGTAAATATACAAAGCTTAATCTATTTTC
TTATTGGTTACTCCTCTCGCCTTAGGCTCGTTTTCGATTCCTTTGACTAT
TTTTGTTTACCAGCCGGTACACCCAACCTATTTTTGTTGCCATTTTCTAG
CTTTGTTCCTCATCTGGGGTACCTATTTCCACTACAATCGGAGCAACTAT
TACTTCCTAGAGCCTGTCCTAGCTTTtgttccaacctactttagagtcGG
TATAATGATTGTTTTATAcacaaaaaaagacatttttatctttgtacata
tttttaaaacgAAAAGTTGTTGTTATTATATTTTTAGCTTTATATATACC
AATAATGTtaatggtgataaaagagaagtaaaaaaaaaaaaaagctctTT
TATAatcgggtagctcagtcggtagagcattcgccttacaatccaagggt
tgtgggttcgatccctggtcatcgccaactcagcggatgagtagcttata
ttgggtaatctgatctacgTGGTAAGaataggtgtggcgctccatcTCGG
CGCTCGATCTCCTAGGTCCAGCACAAATAGCAAAAAGGATAGGCTCTCTC
AACCCCGGCTCTGTCGACAATCACCAATTTAATATACTTGTGATATACTT
CCTGATAAACCCTGCAGACTTCTATGCAAATATGTTTGTTTTTTGGAAGC
TGCGCTATTTATACTTTGCCTGGCAATATATCACCTTAAAATATATGCCA
ATTCCTTTAGCCAAGTAGCAAAGCCCTAGGATATCCTTTCTTGATTAGTT
CTTCCGCACCGATTTTATTTTACCTTGAATATCCACTGCTTTGACAGACA
ATAGATGTCATGCTTTTTTACCTCGATTATCTACTTTGCTTTGACAGATA
CTAGATGTCATGTTTTTTTACCTCGATTATCTACTTTGCTTTGACAGAca
ctagatgtcgtgctttttTACCTTGAATATCCACTTTGCTTTGACAGACA
CTAGATGTCATGTTTTTTTACCTTGGTTATCCACTTTGCTTTGACAGACA
CTAGATGTCATGCATGGAGAGGACGAAGAATTGGTCTTTTTGTACTCTTT
GAAAGAAGGCTATGTTGAATACAGCTATGCAGCTCACGTCGCCCGGTCCG
TTGGAATACAGGCTGATATCGTACAACGAGCTAAAGAGGTAAACACATTT
TAAATAGTGAGGCTAGTCAGTCCGCTCACTTCGCTCAGTTGGTCAGGATA
CGTAATACGTTGagggaattaattttagtgGAAACTATTTTTGGCGGTCT
AAAAAAATGTggaaattgcatttcgcgggatttaaattttcgcggttttg
ctcTTTTGGACACATTCctaattttttgatgaaaattggcaaaatttgtA
ATTTGCCGTTTCCAATTTTCGCAGATATGCCAATAAACTgcgaaaaaaac
gaaaattagtTCTGATATTGTACAGCGGGAAACGGGGTAAAGTTTTAACG
GATCAATCACCTCCAAAATTATTATATCTAGGTTTTAGCATAGGAAGTTT
CGAAAAATCCCTCGGAAACTAGCGAAACTTCAGATTACTGATTTTATTTA
TAAAGAAAGAACACTGACCCACCAGACAAATTCTCTCATTTCAGATTACA
GATTGTATACTGAAAGAACACTGACCCACCTGACAAATTCTCTCATTTCA
GATTACAGATTGTATACTGAAAGAACACTGACCCATTGGACAAATTCTCT
CATTTCAGATTACAGATTGTATACTGAAAGAACACTGACCCATTGGACAA
ATTCTCTCATTTCAGATTACAGATTGTATACTGAAAGAACACTGACCCAT
TGGACAAATTCTCTCATTTCAGATTACAGATTGTATACTGAAAGAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010078XLOC_010078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017970-exon-sc0000282-1491911889:98556..98685TCONS_00017970-exon-sc0000282-1491911889:98556..98685Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1510915933:98556..98685TCONS_00017970-exon-sc0000282-1510915933:98556..98685Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1575043694:98556..98685TCONS_00017970-exon-sc0000282-1575043694:98556..98685Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1491911889:99969..100088TCONS_00017970-exon-sc0000282-1491911889:99969..100088Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1510915933:99969..100088TCONS_00017970-exon-sc0000282-1510915933:99969..100088Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1575043694:99969..100088TCONS_00017970-exon-sc0000282-1575043694:99969..100088Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1491911889:102340..102477TCONS_00017970-exon-sc0000282-1491911889:102340..102477Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1510915933:102340..102477TCONS_00017970-exon-sc0000282-1510915933:102340..102477Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1575043694:102340..102477TCONS_00017970-exon-sc0000282-1575043694:102340..102477Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1491911889:103503..103643TCONS_00017970-exon-sc0000282-1491911889:103503..103643Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1510915933:103503..103643TCONS_00017970-exon-sc0000282-1510915933:103503..103643Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1575043694:103503..103643TCONS_00017970-exon-sc0000282-1575043694:103503..103643Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1491911889:104328..104353TCONS_00017970-exon-sc0000282-1491911889:104328..104353Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1510915933:104328..104353TCONS_00017970-exon-sc0000282-1510915933:104328..104353Clytia hemisphaericaexon
TCONS_00017970-exon-sc0000282-1575043694:104328..104353TCONS_00017970-exon-sc0000282-1575043694:104328..104353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:98556..104353 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.950706	1.8158	2.34438	1.19618	0.174512	0.0637303	0.28136	0	0.120795	0.691504	0.164144	0.272549	0.625451	0.353364	0.274292	0.224663	0.135081	0.32864	0.220262	0	0.434443	0.594568	0.404089	0.445665	5.76651	6.38134	0.224518	0	0.728572	0.711677
Blast
[Close]
BLAST of TCONS_00017970 vs. Swiss-Prot (Human)
Match: MSH5 (MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.509e-39
Identity = 79/218 (36.24%), Postives = 117/218 (53.67%), Query Frame = 2 
Query:    2 RHLLQELCVAQFVSNTSHLSTEEGKMRILTGPNASGKSVYMKQVGLIVYMAHIGSFVPAVSAKISIKSGIYTRX-----------------------------------DEFGKGTSATDGLALLASVLQFWSDENNQRPMVLVSTHFHQI--RKTVSPSSYVKYQTLDVMHGEDEELVFLYSLKEGYVEYSYAAHVARSVGIQADIVQRAKEITDCI 544
            RH L ELC   FV N++    ++G+++++TGPN+SGKS+Y+KQVGLI +MA +GSFVPA  A+I     I+TR                                    DEFGKGT+  DGLALLA+VL+ W       P + V+T+F  +   + +     V+Y T++    +  +LVF Y + EG  + S+A+H A   G+   +V R KE++D I
Sbjct:  562 RHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCE-DGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLI 778
The following BLAST results are available for this feature:
BLAST of TCONS_00017970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH51.509e-3936.24MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=... [more]
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