TCONS_00017944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017944
Unique NameTCONS_00017944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017944 ID=TCONS_00017944|Name=TCONS_00017944|organism=Clytia hemisphaerica|type=transcript|length=1626bp
TCAGTTTGTTTTAGGTCAAAACTAGACAATTAAAAGAAACACCATAGTTT
GAATTTACGTCTGTAAAATAGTCACATAGAAAACTTCGTCACCAGAGCCC
AAAATGGAACATCAACACCGGCATGGTCTTTTCAATTTTCGTTCATCAAG
ACGAAGCATAACAACTCTCTGCCAAGATGCCAGGAGTTACTGTCAAGGAT
GTTTGCCCACAGAAATTTGTTGTTGCTTTTGCAGCCCATTTAAAAAAATC
AAATAAAATGAAGGTTCCTGAATTTGTCGAAATCGTCAAAACCTCAAAGG
CAAAGGAGATTGGCCCAGTTGACCCAGACTGGTATTACGTCAGAGCAGCT
GCCGTTGCACGACACGTTTACTTGCGACCAAACACTGGTGTAGGTGCCCT
TCGTAGAGTATATGGTGGAGCTAAAAACAATGGTACCCGACCCAGTCATT
TCGTAAAAGGATCTGCATCAGTTGCCCGTAAAGTATTGCAATCTTTAGAA
GGATTAAAAATGGTTACCACAGACGAAAATGGAGGCCGAACACTTACATC
CACTGGTAGAAGAGATATGGACAGAATTGCATGccaggttGTTGCTGCCT
AGATGTAATTTATTCCaagaaaaatatcgaaaatacCAAACTTCATTctc
cattttcttttttcctattGACCGTTAATTTTGAACGATCTGCTTCAATA
CTTCATTTAGGGGTgtgtttttgagattttctacATGGAAAAGTCGATTT
GTGCATTTTGGGTTGACAATCGATATTAAAAACTGGCTCCTTGCACACCA
GTTTTGATTCTCGCTAAAAAGATACTTTTTATGGATTATTAACCGAAAAG
CCGGTCTCTCTGGCAAAATATCGATCAAGACAGCTTCCCTCGCAGAATTA
TTTAATTATCGCGATTAACTTCGAATGTAAATTTttgcgaggatttaatt
tcgcgaataggcgaattttttcagatttttacatttttcgttAGTTTGAT
TACGAGATTTTGTCTGTActgtagagtctccataactcaaacgactacga
tgaatgaaaatttattcgaattatagagagattcGAGAGTTTCTTAGCTG
AAAGAATTTTTAGCGTAAAAAACTcaattttcgcgaggattaaatttcgc
gaatttagcGACAGATGAGAGTATGAgaatttttgcgaaaaagacgaaat
ttgcaaaatataatCCTCACGAAAATTTACACCCAAGGTATACAATACAC
CCTATTATTTTGCCCTTGGTCGTAGCACATGCTTATATCAAGCGCATGCT
atatataaaacgtgtattttaatgggataaactttcgcgggtgGCAGCTA
TTGggtgaaatacacattatttatgcttctttgatgcaagtaaccattca
aaaagtatttatttgacatattttgagttttgtttagaaatatttcgcgg
atgaggcccttccaaatttccattgggacttaatttcgcggattttcgcg
gatgacacccaaatccgcgaaagtttatcccattaaagtatttccGGTTC
TAGAGACCGGTTATTATTTCCTGGAAACAGTTTTTCGACACATTGattga
taaaatctcgagaaaatttcaaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00017944-protein

>TCONS_00017944-protein ID=TCONS_00017944-protein|Name=TCONS_00017944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MPGVTVKDVCPQKFVVAFAAHLKKSNKMKVPEFVEIVKTSKAKEIGPVDP
DWYYVRAAAVARHVYLRPNTGVGALRRVYGGAKNNGTRPSHFVKGSASVA
RKVLQSLEGLKMVTTDENGGRTLTSTGRRDMDRIACQVVAA
Run BLAST on NCBI

transcript from alignment at sc0000279:286868..297925-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017944 ID=TCONS_00017944|Name=TCONS_00017944|organism=Clytia hemisphaerica|type=transcript|length=11058bp|location=Sequence derived from alignment at sc0000279:286868..297925- (Clytia hemisphaerica)
TCAGTTTGTTTTAGGTCAAAACTAGACAATTAAAAGAAACACCATAGTTT
GAATTTACGTCTGTAAAATAGTCACATAGAAAACTTCGTCACCAGAGCCC
AAAATGGAACATCAACACCGGCATGGTCTTTTCAATTTTCGTTCATCAAG
ACGAAGCATAACAACTCTCTGCCAAGGTACTGAGAAAGTGATTTTATTTT
GATGCAGACTTTTGATGGCGTTTGAAAATTGTTGTGTTTTTAAACGAGTT
TATTATTATTAGCACAGCTATGTACTTGGTTTACTTCATGGTTCATATCA
TACAGAGAAATATATCAAAATCAGACATGATATTTATTATCGACGGGTAC
AAAATGCATAAAACATAATGCATAATATTTGAAAAATGTCAATTTTAGAG
GCTATTATAAGGATAATCTGAGAGATAATACTTTCAACAAAACAAATAAA
CCATTTTCTACCAGAAAATAAAAGGTAGAAAGCTGTAAATTTGAATTTTG
GATGATGAAGAAAATCCATTATCCACTGAAAATGGTTGTTGCCATTTTGA
TTTTCATAGTTGTATTTTACAGAACGTAGTATAGAGTAGAAAAAAACACG
AAAGAATCTCCTCCGTATATTGGGCCGTTCCAGTTTTTATTCGTTACCCC
CCAATGGACGACATGGAATTTCCGTAGCAAATTACTTTCAAGAAAGTCCG
GAATTTCCGTAACAAATTTACAAAACACTTATCAAAACCGTGGAATTCCG
TTACTGTAACCTAAAAAAATCATGGAATTCCAATACTTTAATGCAAAATT
AAGTAAAATTCATGGAATTCCGATACTTTCTCTTTAAAAAGTTTGCCTGG
AATTCCGTGCCAAAACTTTTTTCAAAAATTGATGTCATCCATCACATCAG
GGGGTAATTTTTTTTTTCTGGAATGGCCCAGGGCCATTCCAGTTTTTATT
CGTTACCCCCCCAATGGACGACATGGAATTTCCGTAGCAAATTGATTTCA
AGAAAGTCCGGAATTTCCGTAACAAATTTACAAAATACCTATCAAAACCG
TGGAATTCCGTTACTGTAACCTTAAAAAATCATGGAATTCCAACTGATTC
CAATACTTTAATGCAAAATTAAGTAAAATTCATGGAATTCCGATACTTTC
TCTTTAAAGTTTGCCTGGAATTCTGTGCCAAAGTTTATGTCAAAAATTGA
TGTCATCCATTAGGGGGTAATTTTTTTTTTCTGGAATGGCCCATTTTTAA
CACCTGTTGTCACGCGAACAGAGCATTTTTTCGATGACCGCCTTACTCTA
AAACGTAAATTTTATAGCACAGTGGGTTCGACTGACAATACACCTTATCG
GAAATTCCACAAAAACAATAGCGTTAAAATGGATCCGTTGAAATTTGGAG
GTAAACATAAATGGTAGCGCGAGTAGCGGCGGTATGGCTTGCAATACATG
GTGTACGCTTGCATAGTACGGCCCAGCTTCAACACTATATTTCCGTCACG
TAAATATGAATTCCATGCGCCTGTAAAAAAGTTCCCGCGTAAAACAAGAA
CTCGTTTGCTTATATCTGGCTTGTTTATGTTCCTAAAAATACACTGAATT
TGAAAAAAACAAACAGAACAAAGCTTTCAAGATGCTAGCAGAAGCTATTA
GAAAGAGAAAAACAACAACTTCGGTGTTTCTTCAGTTAGGGAGGTCGGGC
CTTACGCGTGCGGCAGTAACAAAACATAGATTTTCGAAAAAAAATATTCA
AGCTTACATATCTCAAGGAAAGAAACCTCTTTTAACATAAGTATTTTTTC
CAAAGTGTAGAGAATTTATTCAGCTTTCTTTTGCAGAAAAAATCAGCACA
TCATGTCTTCATGTTCCTTCAAAATTANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACACTTTCGC
TTTTGGTGCCGTAATGAAGGTACAAAATGGCTGGCGATGCGTGCACAAAA
ATGCTTGAAAAATTGAACTTCAAAATGTAATATCTTTGGGACTTTAAAGA
ATTGGAAGGTAAATGACCCCTCATTTTTCTTCTGATGGTTATGGCTTTCC
ATTCAAGTTGGTTTGGTATTCTGCAAGTAAGTTTGAAATTTCCTCTGACC
ACCCTACTTCAGTTGATTTGGAGGCTCTCTCGGCATCAATATTTTGGGTG
TTTTGTAAGGCTTTTTGCCTGAAAACCGCAATATCAAGCTTTGTTTACCT
CCCAAAAAGTGTTGCATAGCAACAACGCAAGGAGGGGGAATTTCCGATAA
GGTGTATTCCTGCATTAATAACACGCATGCGTAATATGTTGTTCTTTTAG
ACCACAAGTAGTTATTTTCCGTGATAATCAAAGAGAAATGAATCGCTAGG
GGTGGTACAGTCACTTTCAGTCGGGTTGTGGATGGTAAAATATGAAATTT
TGTTCTTTTTTGTCGTTTTTTATGAAATTTGTCATTCTTTTTGTCTATTT
TTAGTAATGCAGGAATTATAAGATAGAGCCTCTCGCAAGATCTTTATTCT
GGGTTTTCTCAGAGATCTTTTCGAACAATTGCTATTAAAGTTCAATGGGT
TTTTCCTCTTAAAAATCATTAACCATGTGAATGCTTTTTGTTAGATAAGC
TAATATAAATTAAAGAGCTTCATGCAAAAGCTAGATCAAAGAAAATTAAC
TTCGAATCTTTTCACATTAGAATGTTTATGTGTTTACCTTTGTTGGAGAA
AGAAGAAGGGGGAAACCTTTCTGATCAATCTGGTCTGTTGCATCTTCTTA
TTATTTATGCTGACGGAAAACCCTTTGTTGTTATAATTCGAATGATTAAT
TTCTCTTTCGTTCAGATTCAAAAAGTAAATATCATGTCTAGGAAAATCCT
TCTCATTGGAATGTTTACTTCTAAACAGGCTTTTCATGGTTTTAGCCTCT
ACAAAGGAGAGTTTTAGAAAATATAAAATCGTTCTGTAAATTACACAATA
CTATTATGCATTATGTACCCCGTCGTAATTATTATGTGGTGGATGTTTAG
CAAGAAAAGATTTATTCAGTCAGTAATTTAGTAAAAAATTGTAGTAACTT
ATCTGCCTATATACAAATGGATATACCTGGTTGAGATATCCATCCAATTC
TTTCTCAGAAATGGTCAGGAAAAATAGTGTGCTCCACCAGTTGTGTTCAA
AATTGTAGGGGATGCATTCAGACACATTTGCACAGGCACAGGGTTTGGCT
TGGGTTATGGGTTTTCAGCTGCTAAATTTTGAAACCAATCTGTTTTGGTG
ATAAATATCACAGGCTGGTATGAAATTGTGAATGACTTGTCTTGTGCTTG
TTGATCAGGGGGCAGTTGATCGACTTTCGNGGATAAATATCACAGGCTGG
TATAGAATTGTGAATGACTTGTCTTGTGCTCGTTTATCAGGGGGCCGTTG
ATCGACTTGCGATTTTCAAATTTTTTAGTGGCATTTGGCTGTTAGGCGGC
AATCAAAAATATGTTCCATTTGGGTCCGAAAACATCTTCAAATCCAGTCG
GTCGGTCGGTTGGTCGGTAGTAAATTTAATGGAATTTTTTAAGATCTAGT
AAATCCCGATGAATTAAGTCAACAATCAACAGAATCTAATGCAGCCATCT
TCAATTTGCCAAACTAAATGTGCGCGCGCATGTGTTAAGGTAGGCTGCAC
GCATCCCCTCTGATACGATTTGATATAGGGGATGCGTATCGTCTAAGATA
TTCCTGTCCCAGCTTACCCCAGTCTTTTCTTTTCTCTTTTTAGATTATGT
GTCACAGCTGTACAACAACTTCTCTTTTTCTTTGTTTAGTGAATGAAAAT
TTATAATTATGAAAGCAATAACACAATGACGTCATTTTTCTCTTTCTGTG
ATTGGATGTAACAAAATTATGTAAATTTATGCAACTTTCGGTTACNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCGGACGAGAATTTCATACA
CGATACGCATCCCCTATAACAAAATAAATTCTGGGGATGCGTGCAGCCTA
GTGTTAAGGGGTCTTCAACAAAAAACTTTCAAATGGGCCGATAAGCTTCA
GACCCCCTCCCCCTTGCTCTTATCCAGTCAGGACCTCCTTTCACTTTATC
AATATTACGCAAATGGCACAGTGTGTGCCAAATTATTTTGGTTTTGCTTT
CGATTTTAAGCAAAGGTCTTAGCAACAGGTCGCAAGTACATAGCAACGGG
GCTGGGTAGAAAAATCTAAACATAGAATTCAAATAAAATACTGATCATCA
TAAAGAGCACGAAAGAACACCTCCTTTCTATGTTTAGTTTGTTCTACCTT
GGATTATAACTGAAAATATCTTCAAATAACCTTTGCCCGCTTCAATTCTT
AGATAATGAATAAGAGAGGTGCGCTCAGCCAAGCCCAATCGCGCCCACGG
GAAAGTTCCAATTTTTAATTATCGGGAAACCGATTCAACACGTGGATAAA
AAACGTTTGAAATGAAGCCTGACAAGGTTTTCAAGTAGATTTTATTCAGA
TAAAGCTATAAGAGGTTCATTACTTGTGAATTTTAAAACCTATATAACCA
AAAACAAAAGTTGTTAGGAAGGAAAGAGAACAGAAGGTTCGGTTGTGTTG
ATCAGGTATGTTTTTATTCTATCCGAACTAATGTTATAAAAGACCAAGGA
GGCCCTGACTGCTATTATCGGCCAAATTTTTTCAAAACCAACTTTTTACA
TCTTCAATAACACAATTTTCTCCAATCATGTCTGGCATCGCGTTGATCTT
GCCTTCCCACCTGTCACCGTTGAATATTTGTCTATTTACACCAACACCGA
GTCTGTTCATACCCGCATTGATATTGTTAATCAAAACGAAAGTTAAAAGA
CTCAATGAAGTCGCAACATTTCAAAGGAAACGGCAGCAGGCTTGCCAATG
AAAAAATAGTTTTTTATCTTACTATACTAAATGAGTTTATGAAAAATTTC
TGTAACGCTAGCCCAGAATTAAGAGACATCTCAGTCTATCGCAGCTTCAC
ATAGCCGTAAGAGTGTATGGATATAGGTAATCTATTAGCGTTTTGGGGGA
GAAGCCGTTGCAGTGTAAATCTTTCGCAAATTTGAAAACCCATTTTCCCG
TGGAAATAATTGACGTTTTTTGTTTTTTGGGACCCTTGGGGTACAAAGTA
CCTGTTGACCGCAAAAATTCCAAAATTCGCGAATTGACCATTGACAAAAT
TAGGGGTAAAGGGACCGAATGACGTCACAGATTTGGGAAAAACTTAGAAA
TGCAATATCTCGAGTTTGAGAAGGAGTTGGGAGGTCTTTGACCCCTCATT
GGATCGAGAATTTTATGGGGAATAAGTTGGGAGGGGTTATAAGGCTTGAT
TGTGACTTTGAAATTTGGCTAAATTTTTGGGCGTTTTCACTTGATGAAGT
CATCAAAACAGGGAAAATGCAATATCTCGAGATAGGAAAGGAGTTAGGAG
ATGGTTGACCCCTCATTGGATCGGAAATTCTATGAAGAATAAGATGGGAG
GGGTAACAGTGGGTATATATAAACTTTTGAAAATAAATATATTCAAATTG
AGCCATTTTGGGTCCGATGACGTCATCAAAACCTGAAAAATCCAATATCT
TGAGTTTGAATAAGAATTAGCTCTATTAGCCCCAAGCTTTTTTGACTTTT
GTATCCCCAGGGGGGGGGTAGAATCTACCTCGATTATTTTCGATCTAGAA
GAGCTATGGCCATGATATTTGGTACAGATGTTCTCCATCATGATACAATT
TTCCAGGAAGAAAAAAAAATTGATGACGTCATTCAAAAACTGATGACGTC
ATCACAAAATTTCCACCTGTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGACTGTT
CTTTAACATAATTGCCGGTTTTGCAATTTCAATGAAGATTTTTTCTTAAA
ATCTATGCTGAAGATGAGTAAAATTTTCAAAATTTGATGACGTCATACAT
GATGACGTCATCATTTTCAAAAATTTTCTTTAGATTTTTTAAATTTGTAT
TATCAATGCCTATCACGTGTCAAAATTTGAAAATGATTTAATAAATAGTT
TAGAAGTTATCAGCACTTTAAAATTTTGAGTTTTAAGGATTTTAGCTGGG
TTTTATGTCATGTTTCACAATAAAGTCATAAAACCTGATCTGGACNNNAT
AAATAGTTTAGAAGTTATCAGCACTTTAAAATTTTGAGTTTTAAGGATTT
TAGCTGGGTTTTATGTCATGTTTCACAATAAAGTCATAAAACCTGATTTG
GACAACCTATGACCCTAAAATTTTGTACAAGTACTCTTAATAAGATTTTA
TTAAAAGCCAGAAAGTTTCAAGTCGTTTGAAATTTTTTTCTCCGAGATAT
AAACAAAAGAACTCCAGCGTGGTAGATTCTACCTCCCCCCCCCCCTGGGG
CTAATAGGGTTAAGCAATGGTTGACCCCTCATTGGATCAGAAATCATCGA
GAAAATCTTTTGGGTAAATGACAAATTGATTTCAGTAAAGTAAACAATTT
ATTGACCTTTCGATGGCCCAAATGACGCCACAAACATTAAGTATACGATT
TCTCGAACTTCAATCAGTTCAATATTTCGTTCTTTGGGCTTAGAATTCAA
GCTTATTACCCTCCTCCACCATCCAAAGTGCTTTTGATGTGTTCAACAAC
ACTCTACTCGGCGGATGCGACGTTGGGTGACGGCGTTTATGAAAATGTGT
GTAGCGCAAGATGGTAGCTGAGCTGTTATTCTCAAATTTTGCCAGGGGGT
TGATTCCAGTATGAAAGAGGGATTTTGTGCAGTTTTAAGACAAAAAATCT
TATTGTCTTTCGAAAAAGTAGTTGATGATACGTTGTGGCTTTAATTTTGT
GTTTAAAATTTCATTTTCATCTATGATTGAGTGCGAAAATTAGCATTATC
TTCCGATAAAACCCCCGTCCAAAAAAAGGACTAATTCGAATTCTCCTTAA
AAATAAAGTTAGAGAGCATCAGCAATACCATCTTTATCATCCTAAGGGTT
TTTGATGCGCAAGCTAAGCCGGCGTGTGTGACGACGGGAACCATCTAGTC
GAAGCTAATTCAAAACTTTACTTTTAAAGCTGCGAATTTGTGCGCGAAGG
TGAAAGCAAGTGAAATTGTATGCTTTCAGTGGGAGATTGTGCGCAAAATC
AGAGAGAAATTGGCTGAAAAGATTTTTGCCCCAATACTTGTTTTTTTATC
GGTATGTACCCCCACCCCCTTATCAGCCCAATGCCTATAAAAATTTGAAA
GTTTTTTGTCGACGATCCCTAACGTTAAAGCAGCCCTTATTTTCAGCCCC
CAGGGTAATGGCCCTGCCACGTTGCTGAATTTTGACATGAAAATTTCAAT
AAGGGTACATGAAAACTTGAACAGGACTCAATGTGGGTTAAGTAAACAAA
AATAATGATTCAAAGACATGCTCCGTTCGCCAATGCCCGCCATTATGGGA
TAGATCCGAACCTGCAAACAGCGCCCAAAAAAAACCGACGATTTTACCGA
CTTTCCGAATCACGTTTTCACACCCCTCTCTCTCTCTCTTAAAGGCCAAA
TGCTGCTAAAAAAATTTATGAGCCCCCAATTAAGAGCCACAAAATTTTGG
ATCTTTGCCCTGAAAACCTGGCCTGAATATGTATTGGCGCCAGTTCTAGT
CATATTCAGGACTTTTTTAGATAAAAAACAGTCAAGTTTCGGCTAAATTA
TAGGTCATCTTTTTTATAAGAACAATGAGATTAAAAACTGCTGAAAATGA
GAGTAATTTAAGGGCCATGATGAGCTTCAAAGTGCTAAGTTTCGAGGAAC
TTTAAGGGTATAACTTTTAAAAAATTGGGTATTAAATCTAAAATAAGAGC
ACCTTAGCTTACAAAGCTATTAGTTTTTTTTTTACTTTTCAGTAAAAAAG
TTAGCATTTTATTAGAGTAGTATTACATAGAATTTATTCTTGAGGCCCTT
GGTGTTTGTCTAACATTTTTTGTCTTTATTCTCTTAGATGCCAGGAGTTA
CTGTCAAGGATGTTTGCCCACAGAAATTTGTTGTTGCTTTTGCAGCCCAT
TTAAAAAAGTAAGTTTTACACTTACACAAAATCTCTCTTTTGGTTCAAAA
ATTCTGTGTAAGCACATCATAAGGAAGATACATTAAATTGTGTCTTTTTT
AAACAAAATCAGAATCACAGCTTAAATTCCACTACTTGAATGATAATGTA
ACTAATTCAACCAATACTTCAGTTTTAGCAAATCAACACCTTTGAAAAGA
TAATCTAGAGCACGATAATCATTTTCCTTTTTTCGACTCCGACGAGCTTC
CTTTCCTTAGGCTTTAAACTACTTCCACTCTAAGAATTTTAAGTTCTAGC
ACAAGGGTAAAAAGTTTTTTCTTTGTCATTTTTAAAGATTATAAATAGTG
CTCTAGTGAGTTTTATTTTCGATGTCAAATTTGTAGATTTGAATAAATTG
CTTGAAAAATAAGAATTTAAGGCACCCTTAAAAGCGAATGAACTTAAGCT
TATTTTGAACATCTTTCAGATCAAATAAAATGAAGGTTCCTGAATTTGTC
GAAATCGTCAAAACCTCAAAGGCAAAGGAGATTGGCCCAGTTGACCCAGA
CTGGTATTACGTCAGAGCAGCTGCCGTTGCACGACACGTTTACTTGCGAC
CAAACACTGGTGTAGGTGCCCTTCGTAGAGTATATGGTGGAGCTAAAAAC
AATGGTACCCGACCCAGTCATTTCGTAAAAGGATCTGCATCAGTTGCCCG
TAAAGTATTGCAATCTTTAGAAGGATTAAAAATGGTTACCACAGACGAAA
ATGGAGGCCGAACACTTACATCCACTGGTAGAAGAGATATGGACAGAATT
GCATGCCAGGTAATTTTTTTTCTTGTAAACATCAACTTTAAATTCATTTG
TAAGAACAATGGACTTTTATTTATAGCAAAACTTAGTAAAAAAGATGCTC
TTAGTGAACGTTCGGACTATTTTAAAGAAGTTGTATTTGAGACAAAATAT
ACATTTTTGATGTTTTTAACCTGTATCTACTTTAATTTAAGTCTAATCAA
CATATTTTTAAAATAACTTTAAGGCGTTAGTTCCTCATTTGGAAATGATT
TCTTTCTTTTATTTTTCAGGTTGTTGCTGCCTAGATGTAATTTATTCCAA
GAAAAATATCGAAAATACCAAACTTCATTCTCCATTTTCTTTTTTCCTAT
TGACCGTTAATTTTGAACGATCTGCTTCAATACTTCATTTAGGGGTGTGT
TTTTGAGATTTTCTACATGGAAAAGTCGATTTGTGCATTTTGGGTTGACA
ATCGATATTAAAAACTGGCTCCTTGCACACCAGTTTTGATTCTCGCTAAA
AAGATACTTTTTATGGATTATTAACCGAAAAGCCGGTCTCTCTGGCAAAA
TATCGATCAAGACAGCTTCCCTCGCAGAATTATTTAATTATCGCGATTAA
CTTCGAATGTAAATTTTTGCGAGGATTTAATTTCGCGAATAGGCGAATTT
TTTCAGATTTTTACATTTTTCGTTAGTTTGATTACGAGATTTTGTCTGTA
CTGTAGAGTCTCCATAACTCAAACGACTACGATGAATGAAAATTTATTCG
AATTATAGAGAGATTCGAGAGTTTCTTAGCTGAAAGAATTTTTAGCGTAA
AAAACTCAATTTTCGCGAGGATTAAATTTCGCGAATTTAGCGACAGATGA
GAGTATGAGAATTTTTGCGAAAAAGACGAAATTTGCAAAATATAATCCTC
ACGAAAATTTACACCCAAGGTATACAATACACCCTATTATTTTGCCCTTG
GTCGTAGCACATGCTTATATCAAGCGCATGCTATATATAAAACGTGTATT
TTAATGGGATAAACTTTCGCGGGTGGCAGCTATTGGGTGAAATACACATT
ATTTATGCTTCTTTGATGCAAGTAACCATTCAAAAAGTATTTATTTGACA
TATTTTGAGTTTTGTTTAGAAATATTTCGCGGATGAGGCCCTTCCAAATT
TCCATTGGGACTTAATTTCGCGGATTTTCGCGGATGACACCCAAATCCGC
GAAAGTTTATCCCATTAAAGTATTTCCGGTTCTAGAGACCGGTTATTATT
TCCTGGAAACAGTTTTTCGACACATTGATTGATAAAATCTCGAGAAAATT
TCAAAAAA

Coding sequence (CDS) from alignment at sc0000279:286868..297925-

>TCONS_00017944 ID=TCONS_00017944|Name=TCONS_00017944|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000279:286868..297925- (Clytia hemisphaerica)
GTTGTTGCTGCCTAGATCAAATAAAATGAAGGTTCCTGAATTTGTCGAAA
TCGTCAAAACCTCAAAGGCAAAGGAGATTGGCCCAGTTGACCCAGACTGG
TATTACGTCAGAGCAGCTGCCGTTGCACGACACGTTTACTTGCGACCAAA
CACTGGTGTAGGTGCCCTTCGTAGAGTATATGGTGGAGCTAAAAACAATG
GTACCCGACCCAGTCATTTCGTAAAAGGATCTGCATCAGTTGCCCGTAAA
GTATTGCAATCTTTAGAAGGATTAAAAATGGTTACCACAGACGAAAATGG
AGGCCGAACACTTACATCCACTGGTAGAAGAGATATGGACAGAATTGCAT
GCCAGATGCCAGGAGTTACTGTCAAGGATGTTTGCCCACAGAAATTTGTT
GTTGCTTTTGCAGCCCATTTAAAAAAGTTGTTGCTGCCTAGATCAAATAA
AATGAAGGTTCCTGAATTTGTCGAAATCGTCAAAACCTCAAAGGCAAAGG
AGATTGGCCCAGTTGACCCAGACTGGTATTACGTCAGAGCAGCTGCCGTT
GCACGACACGTTTACTTGCGACCAAACACTGGTGTAGGTGCCCTTCGTAG
AGTATATGGTGGAGCTAAAAACAATGGTACCCGACCCAGTCATTTCGTAA
AAGGATCTGCATCAGTTGCCCGTAAAGTATTGCAATCTTTAGAAGGATTA
AAAATGGTTACCACAGACGAAAATGGAGGCCGAACACTTACATCCACTGG
TAGAAGAGATATGGACAGAATTGCATGCCAGATGCCAGGAGTTACTGTCA
AGGATGTTTGCCCACAGAAATTTGTTGTTGCTTTTGCAGCCCATTTAAAA
AAGTTGTTGCTGCCTAGATCAAATAAAATGAAGGTTCCTGAATTTGTCGA
AATCGTCAAAACCTCAAAGGCAAAGGAGATTGGCCCAGTTGACCCAGACT
GGTATTACGTCAGAGCAGCTGCCGTTGCACGACACGTTTACTTGCGACCA
AACACTGGTGTAGGTGCCCTTCGTAGAGTATATGGTGGAGCTAAAAACAA
TGGTACCCGACCCAGTCATTTCGTAAAAGGATCTGCATCAGTTGCCCGTA
AAGTATTGCAATCTTTAGAAGGATTAAAAATGGTTACCACAGACGAAAAT
GGAGGCCGAACACTTACATCCACTGGTAGAAGAGATATGGACAGAATTGC
ATGCCAGATGCCAGGAGTTACTGTCAAGGATGTTTGCCCACAGAAATTTG
TTGTTGCTTTTGCAGCCCATTTAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010057XLOC_010057Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017944-exon-sc0000279-1575043694:297750..297925TCONS_00017944-exon-sc0000279-1575043694:297750..297925Clytia hemisphaericaexon
TCONS_00017944-exon-sc0000279-1575043694:288968..289038TCONS_00017944-exon-sc0000279-1575043694:288968..289038Clytia hemisphaericaexon
TCONS_00017944-exon-sc0000279-1575043694:288167..288506TCONS_00017944-exon-sc0000279-1575043694:288167..288506Clytia hemisphaericaexon
TCONS_00017944-exon-sc0000279-1575043694:286868..287906TCONS_00017944-exon-sc0000279-1575043694:286868..287906Clytia hemisphaericaexon
TCONS_00017944-exon-sc0000279-1510915933:297750..297925TCONS_00017944-exon-sc0000279-1510915933:297750..297925Clytia hemisphaericaexon
TCONS_00017944-exon-sc0000279-1510915933:288968..289038TCONS_00017944-exon-sc0000279-1510915933:288968..289038Clytia hemisphaericaexon
TCONS_00017944-exon-sc0000279-1510915933:288167..288506TCONS_00017944-exon-sc0000279-1510915933:288167..288506Clytia hemisphaericaexon
TCONS_00017944-exon-sc0000279-1510915933:286868..287906TCONS_00017944-exon-sc0000279-1510915933:286868..287906Clytia hemisphaericaexon
TCONS_00017944-exon-sc0000279-1491911889:297750..297925TCONS_00017944-exon-sc0000279-1491911889:297750..297925Clytia hemisphaericaexon
TCONS_00017944-exon-sc0000279-1491911889:288968..289038TCONS_00017944-exon-sc0000279-1491911889:288968..289038Clytia hemisphaericaexon
TCONS_00017944-exon-sc0000279-1491911889:288167..288506TCONS_00017944-exon-sc0000279-1491911889:288167..288506Clytia hemisphaericaexon
TCONS_00017944-exon-sc0000279-1491911889:286868..287906TCONS_00017944-exon-sc0000279-1491911889:286868..287906Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017944-proteinTCONS_00017944-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:286868..297925 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
505.551	470.164	511.101	532.251	378.563	312.735	426.359	460	701.254	688.323	792.888	869.935	982.922	997.25	944.209	973.142	1003.97	1044.06	523.904	609.666	1076.35	1082.09	730.222	740.043	744.329	784.034	950.789	995.154	631.17	625.63
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001266Ribosomal_S19e
IPR018277Ribosomal_S19e_CS
IPR011991WHTH_DNA-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00017944 vs. Swiss-Prot (Human)
Match: RS19 (40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.989e-45
Identity = 88/141 (62.41%), Postives = 110/141 (78.01%), Query Frame = 3 
Query:  177 MPGVTVKDVCPQKFVVAFAAHLKKSNKMKVPEFVEIVKTSKAKEIGPVDPDWXXXXXXXXXXXXXXXPNTGVGALRRVYGGAKNNGTRPSHFVKGSASVARKVLQSLEGLKMVTTDENGGRTLTSTGRRDMDRIACQVVAA 599
            MPGVTVKDV  Q+FV A AA LKKS K+KVPE+V+ VK +K KE+ P D +W+Y RAA+ ARH+YLR   GVG++ ++YGG + NG  PSHF +GS SVAR+VLQ+LEGLKMV  D++GGR LT  G+RD+DRIA QV AA
Sbjct:    1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141
The following BLAST results are available for this feature:
BLAST of TCONS_00017944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS191.989e-4562.4140S ribosomal protein S19 OS=Homo sapiens GN=RPS19... [more]
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