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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001629 ID=TCONS_00001629|Name=TCONS_00001629|organism=Clytia hemisphaerica|type=transcript|length=2620bpRun BLAST on NCBI protein sequence of TCONS_00001629-protein >TCONS_00001629-protein ID=TCONS_00001629-protein|Name=TCONS_00001629-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp MIATTKHGKERAKLRRMSSFSASLDYDNEDEALYKEIFYIENGSQSNIYCRun BLAST on NCBI transcript from alignment at sc0000011:1067026..1089587+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001629 ID=TCONS_00001629|Name=TCONS_00001629|organism=Clytia hemisphaerica|type=transcript|length=22562bp|location=Sequence derived from alignment at sc0000011:1067026..1089587+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000011:1067026..1089587+ >TCONS_00001629 ID=TCONS_00001629|Name=TCONS_00001629|organism=Clytia hemisphaerica|type=CDS|length=18072bp|location=Sequence derived from alignment at sc0000011:1067026..1089587+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001629 vs. Swiss-Prot (Human)
Match: KPTN (KICSTOR complex protein kaptin OS=Homo sapiens GN=KPTN PE=1 SV=2) HSP 1 Score: 277.33 bits (708), Expect = 2.472e-83 Identity = 167/418 (39.95%), Postives = 233/418 (55.74%), Query Frame = 1
Query: 166 KEIFYIENGSQSNIYCNTTIRYPSETQERFLVGTLNGNVSCLERFKDVTAKEKFHSSHSMDAYEVCFAYIPAGAEIISMDAFYQKGFFDSYDCLIVGITIIIKKPDGESLHFLNVYNAIEPVKEFEIDKLAQVCQHLPLGFIPYQLRHTRIHINGRSEKVFLLAGGDQQIHVFRSNDK-QNFEEVACGKFFPEFVNLPGVVLWMDIKNFANM--RLSAVGCDNGQLLVCSTNTEENRVMESWTLSLDGPISTVRFFSLSKNKRKEKLXXXXXXXXXXXXXXKLHLLVTSCLEVSVVFVDILNKGLDDMSVLNQSDQFDSVTCSCVADIDFDGNNEIILGTYGQELLVYKWSAADNGLSDHIR-FDLMWSRSFSKPLLSIRDLDLMNDGMQELVIVSLTGVHILQQNVSMAAETLLDIL 1407
+E + SQSN+Y + + L TL G V R++D+ K + A E+ F YIP AEI+S+D F + L+VGIT I D S FLN+Y EP E+ +D +AQ C +L L F P+QL H + + + E VFLL+G D IH+++ N+ FEE FPE NL VLW+D+ NF RLSA+GC +G + V + V++ W++ DGPIS V FSLS K + ++ +LV S LE +VV+ D+LN+GL+D +L SDQFDSV CS V D+D DG E+++ TYGQELL YK+ ++GL + F L+W RSFS PLL++ +DL DG+QEL +VSL GVHILQ ++ A+E +L L
Sbjct: 15 REDSFTRFSSQSNVYGLAGG---AGGRGELLAATLKGKVLGF-RYQDLRQKIR------PVAKELQFNYIPVDAEIVSIDTFNKS---PPKRGLVVGITFIKDSGDKGS-PFLNIYCDYEPGSEYNLDSIAQSCLNLELQFTPFQLCHAEVQVGDQLETVFLLSGNDPAIHLYKENEGLHQFEEQPVENLFPELTNLTSSVLWLDVHNFPGTSRRLSALGCQSGYVRVAHVDQRSREVLQMWSVLQDGPISRVIVFSLSAAKETKD----------RPLQDEYSVLVASMLEPAVVYRDLLNRGLEDQLLLPGSDQFDSVLCSLVTDVDLDGRPEVLVATYGQELLCYKYRGPESGLPEAQHGFHLLWQRSFSSPLLAMAHVDLTGDGLQELAVVSLKGVHILQHSLIQASELVLTRL 408 The following BLAST results are available for this feature:
BLAST of TCONS_00001629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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