TCONS_00017790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017790
Unique NameTCONS_00017790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length988

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017790 ID=TCONS_00017790|Name=TCONS_00017790|organism=Clytia hemisphaerica|type=transcript|length=988bp
gttttattgaAATTTATGTTTTTAGCTACATCCTTGCATTTGAGAGTGCA
CGAGAGATCAAAGAACATTTTGCCAATTTGCTACCAATGGATAGCCCTGA
AGCTCAAGCTTTTTATAAAGAATTCACAAAACGTTGGAAACCAATTAGCA
GCAGTGGAACAGTAATGCAAAAGAAACATGATTATTTGGACGATTTTATG
AAGCCAAAGAAAGATaaaaggaaagaaaaaaaacaagatcCAACAATGAT
AAAAGATACACAACTTCCTCAAACGtatgaaaataacaacaaagaaAACA
ATATCTTGATGGAGGATGCAGAAAATCTCTATCCTTCTGTTATGTCTGTT
GATGTGACGGGAGCAGAATTTTTGGATAAAAACAAACCGATGATTGGAGA
AATTAAAATGAAGAGTTGTTCTCCCTTCAAGAAGAAGAATTTAAAATTCA
TCCCACTCTTTGGAGCAGATGGTAAAATGAAGACAGATACGGTCACATTA
CCAGGGCGACATCCATGTCAATGTTTAGCACAAAAACATAAACTGATCAA
TAACTGTCATTCGTGCGGCAGGATTGTTTGTGAGCAAGAGGGAGCAGGTT
AGGTTGCCTTTTCTTCTATTTATTTAGTGCTATAAACACTTCACAATATG
TTGTCATGCAATATGTTGAcgatatattgctgagtgcctgcaatatattg
aaaatgtgtCCACAATTATTATTGTCAGCCGGAATTGCAATATTCCACCA
ATATAGGGGGAttatttacagaaagaaaattccttttcatAATAGAGTAC
CTGTTATAAATATTGtttgtcaatatattgtgtagtctaagtagcccttt
atTGGTTTACATTGATATAAATTTGCATTCAAAtattaaatgaaaaacaa
aaaaagcttttgttggacctacctccgggtaccccggtggaggtcctatg
aattaaccgttgtctgttcgtccgttcgtctgtccgtt
Run BLAST on NCBI

transcript from alignment at sc0000276:33949..36597-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017790 ID=TCONS_00017790|Name=TCONS_00017790|organism=Clytia hemisphaerica|type=transcript|length=2649bp|location=Sequence derived from alignment at sc0000276:33949..36597- (Clytia hemisphaerica)
GTTTTATTGAAATTTATGTTTTTAGCTACATCCTTGCATTTGAGAGTGCA
CGAGAGATCAAAGAACATTTTGCCAATTTGCTACCAATGGATAGCCCTGA
AGCTCAAGCTTTTTATAAAGAATTCACAAAACGTTGGAAACCAATTAGCA
GCAGTGGAACAGTAATGCAAAAGAAACATGATTATTTGGACGATTTTATG
AAGCCAAAGAAAGATGTGAGTTATGTTTAGAGATTGCTAACTTTTTATCT
TGTGTCCGTTTTGATATAAGAGTAGAGCTAATGGAAACCGTTGGTTTATG
TGGCCAATTGATATTAACTTTAAAGAGGAGAGGCAAGGCAGAGGTCGACC
ATCTTAAGTAGGGCTTATTTTTCATCATTCGTTACTGCTTTAAGTTGCTA
ATTAACAAATTTTGTAATTTTTTTATGGTTGTATTTTTATTAGAAATTTG
AGGATAGCAATTACCAATCAAGAATTAAACCTATATCATATTATAAGATA
TTATAATAAAATAAAACTATAGTTTAAAATAATTTTTGCACGTATTTTTT
CTAGAAAAGGAAAGAAAAAAAACAAGATCCAACAATGATAAAAGATACAC
AACTTCCTCAAACGTATGAAAATAACAACAAAGAAAACAATATCTTGATG
GAGGATGCAGAAAATCTCTATCCTTCTGTTATGTCTGTTGATGTGACGGG
AGCAGAATTTTTGGATAAAAACANCAAGGTCAGTTACTTTACTAATTTTT
TAGTTTTATTGAAATTTATGTTTTTAGCTACATACTTGCATTTGAGAGTG
CACGAGAGATCAAAGAACATTTTGCCAATTTGCTACCAATGGATAGCCCT
GAAGCTCAAGCTTTTTATAAAGAATTCACAAAACGTTGGAAACCAATTAG
CAGCAGTGGAACAGTAATGCAAAAGAAACATGATTATTTGGACGATTTTA
TGAAGCCAAAGAAAGATGTGAGTTATGTTTAGAGATTGCTAACTTTTTAT
CTTGTGTCCGTTTTGATATAAGAGTAGAGCTAATGGAAACCGTTGGTTTA
TGTGGCCAATTGATATTAACTTTAAAGAGGAGAGGCAAGGCAGAGGTCGA
CCATCTTAAGTAGGGCTTATTTTTCATCATTCGTTACTGCTTTAAGTTGC
TAATTAACAAATTTTGTAATGTTTTTTATGGTTGTATTTTTATTAGAAAT
TTGAGGAAAGCAATTACCAATCAAGAATTAAACCTACATCATATTATAAG
ATATTATAATAATAAAACTATAGTTTAAAATAATTTTTGCACGTACATTT
TTTCTAGAAAAGGAAAGAAAAAAAACAAGATCCAACAATGATAAAAGATA
CACAACTTCCTCAAACGTATGAAAATAACAACAAAGAAAACAATATCTTG
ATGGAGGATGCAGAAAATCTCTATCCTTCTGTTATGTCTGTTGATGTGAC
GGGAGCAGAATTTTTGGATAAAAACAAACCGATGATTGGAGAAATTAAAA
TGAAGGTAATACAAAAATGCTATTGATGATATAGCTCCTCTTTGTATAGT
GATTAGTAATAGTTTGAGTGCAATGACCCTGGAAAAGGATCCCAGAGTTA
ACATAAAAGATACTATTTCATCAGGAGACCTAATCCTAAATTCAAATTCT
TGTTTGTATATTGCTTTTATAGTAAACGCTTCAGGTCGAGTTATTGTATC
AAAATCAAAAACGTATCTGTTGGAGTAGGATAACAACAACACCCCTTCTC
ACAGACCCACTGGGAACCCTTCCCACTGGAAAAATTGGCCAAATTATCAT
CCCTAGTGGAAAATTGTACTCTAATTTTTGTCCCAACTGAAAATAAATCC
GATAAGAAGCAAATCCTCACTGCAAAATATTGAGCTATTTTTTCCATCCC
CACTGAATTTTCTGGCTCGAAATCAATGTATTTCAAATCCCCAGTCGTAA
AAAAAACATGGGAAAATCAATCCCCATGGATTTTTGGTCCGTCATTGTTA
CCCCTATTGGCTGGAAAACACCTGTGAGAAGGGGTGTATAACACTGAAGA
TAATTATTACATTTTCCACAATAGAGTTGTTCTCCCTTCAAGAAGAAGAA
TTTAAAATTCATCCCACTCTTTGGAGCAGATGGTAAAATGAAGACAGATA
CGGTCACATTACCAGGGCGACATCCATGTCAATGTTTAGCACAAAAACAT
AAACTGATCAATAACTGTCATTCGTGCGGCAGGATTGTTTGTGAGCAAGA
GGGAGCAGGTTAGGTTGCCTTTTCTTCTATTTATTTAGTGCTATAAACAC
TTCACAATATGTTGTCATGCAATATGTTGACGATATATTGCTGAGTGCCT
GCAATATATTGAAAATGTGTCCACAATTATTATTGTCAGCCGGAATTGCA
ATATTCCACCAATATAGGGGGATTATTTACAGAAAGAAAATTCCTTTTCA
TAATAGAGTACCTGTTATAAATATTGTTTGTCAATATATTGTGTAGTCTA
AGTAGCCCTTTATTGGTTTACATTGATATAAATTTGCATTCAAATATTAA
ATGAAAAACAAAAAAAGCTTTTGTTGGACCTACCTCCGGGTACCCCGGTG
GAGGTCCTATGAATTAACCGTTGTCTGTTCGTCCGTTCGTCTGTCCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009972XLOC_009972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017790-exon-sc0000276-1575043694:36383..36597TCONS_00017790-exon-sc0000276-1575043694:36383..36597Clytia hemisphaericaexon
TCONS_00017790-exon-sc0000276-1575043694:35093..35290TCONS_00017790-exon-sc0000276-1575043694:35093..35290Clytia hemisphaericaexon
TCONS_00017790-exon-sc0000276-1575043694:33949..34523TCONS_00017790-exon-sc0000276-1575043694:33949..34523Clytia hemisphaericaexon
TCONS_00017790-exon-sc0000276-1510915933:36383..36597TCONS_00017790-exon-sc0000276-1510915933:36383..36597Clytia hemisphaericaexon
TCONS_00017790-exon-sc0000276-1510915933:35093..35290TCONS_00017790-exon-sc0000276-1510915933:35093..35290Clytia hemisphaericaexon
TCONS_00017790-exon-sc0000276-1510915933:33949..34523TCONS_00017790-exon-sc0000276-1510915933:33949..34523Clytia hemisphaericaexon
TCONS_00017790-exon-sc0000276-1491911889:36383..36597TCONS_00017790-exon-sc0000276-1491911889:36383..36597Clytia hemisphaericaexon
TCONS_00017790-exon-sc0000276-1491911889:35093..35290TCONS_00017790-exon-sc0000276-1491911889:35093..35290Clytia hemisphaericaexon
TCONS_00017790-exon-sc0000276-1491911889:33949..34523TCONS_00017790-exon-sc0000276-1491911889:33949..34523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:33949..36597 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.011	16.3176	5.40764	3.60037	7.64016	5.39963	5.83758	7.18371	3.792	5.23054	9.19653	3.19259	3.42171	5.09234	5.62225	7.65602	4.26264	5.87754	3.59055	5.27883	4.93093	5.24538	15.8423	15.3524	8.40626	10.074	4.74205	4.63561	9.46904	10.5543
Blast
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BLAST of TCONS_00017790 vs. Swiss-Prot (Human)
Match: TRIP4 (Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 8.723e-17
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:  432 KKNLKFIPLFGADGKMKTDTVTLPGRHPCQCLAQKHKLINNCHSCGRIVCEQEGAG*VAF 611
            KK  KF+ L+  +G+ +   V LPGRHPC CL QKHKLINNC  CGRIVCEQEG+G   F
Sbjct:  144 KKKTKFVNLYTREGQDRL-AVLLPGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCLF 202
The following BLAST results are available for this feature:
BLAST of TCONS_00017790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRIP48.723e-1761.67Activating signal cointegrator 1 OS=Homo sapiens G... [more]
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