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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017668 ID=TCONS_00017668|Name=TCONS_00017668|organism=Clytia hemisphaerica|type=transcript|length=2012bp
CGATCAAACATTTTCTACCAAGATCAAATATTTGGGAAATTACTGAAGAA
ATTACAAGATGATTTCAAGACTACTTTATCTGACTGCTGCCATTTTTGTT
GCCATTCATGGAAAAAGCATCAAGTTGCCAGGCAACTGCTACCACAACGA
TCTGAAACAAAGTTCTGAAAGATGTGATGCCTTCATCCAATGTGCAAATG
GAGTACCTGTTCAAAACATCTGTCCAGAGATCAAAGATGCCGACAAGAAT
CCTCTCTCTGGTGGATACAAACGTCTCTTTTTCAATGAAGCCAAGCAGGT
CTGTGATTGGCCTGTTCATACTTATTGTCCCTCAGGACCAGGTCCCGACA
AACCAACGACAACGACCAAAAAACCGACAACGACTACCACCAAAAAACCG
ACAACAACTACCACCAAAAAACCGATAACGACTACCACCAAAAAACCGAC
AACAACTACCACCGAATTGGAAACAACAACTGAAGTAATCACCACGACCG
AAGAACAAACGACAACTGAATTCGTAGATACAACAACTGAACCATTTACA
ACCACTGAACCATATACGACAACCGAACCAATAACGACCACCGAGCCCTT
TACAACTACCGAAGAACAAACGACGACTGAATTTGTAGAAACAACAACTG
AACCATTTACAACCACTGAACCATATACGACTACCGAACCGATAACAACC
ACCGAACCGTTTACAACAACCGGTGAAAAAACGACAACAGAATTCGTTGA
CACAACCACCGATTATTTTACCATGACAACTGACGCAACAACCGACTTTA
TAGTTACAACTACCGAATTCAAAACAACCGAACCTGATCAATACGTACGA
CGAGTTTGTTATGGTAAAGGNTCAAAATATCTGTCCAGAGATTAAAGATG
CTGACAAGAATCCTCTCTCTGGTGGATACAAACGTCTCTTTTTCAATGAA
GCCAAGCAAGTCTGTGATTGGCCTGTTCATACTTATTGTCCCTCAGGACC
AGGCCCCGACAAACCGACAACAACGACCAAAAAACCGATAACGACTAGCA
CCAAAAAACCGACAACGACTACCACCGAATTGGAAACAACAACTGAAGTA
ATCACCACGACCGAAGAACAAACGACGACTAAACTCGTAGAAACAACAAC
TGAACCATTTACGACCACTGAAACAATTACAACTACCGAACCAATAACGA
CTACCGAACCGTTTACAACCACCGAAGAACAAACGACGACTGAATTCGTA
GAAACGACAACTGAACCATTTACAACCACTGAACCATATACGACTACAGA
ACCGATAACAACCACCGAACCGTTTACAACAACCGAAGAAAAAACGACAA
CAGAATTCGTTGACACAACCACCGATTATTTTACCATGACAACTGACGCA
ACAACCGACTTTATAGTTACAACTACCGAGTTCAAAACGACGGAACCCGA
TCAATACGTACGACGAGTTTGCTACGGTAAAGACCGACGACCAGGAAGTT
TCAAAGCACCCAGAACAGGTCTTATTCGTAGCTTCACACTGAGGCATGTT
AGTGGTTTTGCCAATTGTCAAGGAGGTAGACCAGGATTCTGGAATTGCAT
TCGTGAAGGTGACTACGAATATTTGAACACCATCATCACTGTTCAAGATT
CCAGACCTGGTAAACCAAATGctgatgttgttgtttttccGCAACAGTTC
GAATTCAACCGCATAAATGATGATGGTGAATTTATGATCAGTGGTCTTAC
AGCGATCAGTGATTCTATCACCATCTTCAAAGATAAGTATGAAGTGACCA
GTGGTGATGTCATCTCCATTCATTACGGTAGTCATTATCTTAACAGAAAC
ATTGGTGTTACTACCAATGGTCATTGTGTTGATGTCACTTTggaatattt
ctaaaaaacattttggaagataatttgaaaagaaaaaagaaaggtGGAAG
ACTGAAGATATTCCTAAAGAATTAATGGGGGCCCATTAATGTTATGGAAT
TAATAATGTAAA Run BLAST on NCBI transcript from alignment at sc0000273:90679..93247+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017668 ID=TCONS_00017668|Name=TCONS_00017668|organism=Clytia hemisphaerica|type=transcript|length=2569bp|location=Sequence derived from alignment at sc0000273:90679..93247+ (Clytia hemisphaerica)
CGATCAAACATTTTCTACCAAGATCAAATATTTGGGAAATTACTGAAGAA
ATTACAAGATGATTTCAAGACTACTTTATCTGACTGGTAAGTCAAATGTG
AAATTTGTACCTTCAtttagatagagtcgatattttacttGGATAGGCAA
GTAATCTAGGGCTTTTAGGCAgccttttgattgttttcacggggtgtAAC
GGCTAGCTGGCTCGGCTATCTGtaaactgaacggaacattggaagaagcg
gggatttgaaccggggatttGAACCGGGTACCCCTGGTTTAAGAAGATGA
CGCCTTTTACCACTCGGTAATCGCCTCTTGATACCATCATTGTTAATAGG
ATATGCATTTGTGCACGGAATATTATAACAAACGTCGATTATTATAATTT
TCTTTAACTATAAAGCTGAAATTGTTTGAGGAATTTCTCAAATCGGAAGA
AGTTATCTTCAACCTTCAACTTGAGGTATCTTGAGTTTTGAGGAATGTAA
AGAGTGATTGATAATGAAATTAAAAGTTGCTGAActatttcatttcttta
tttgTCGTATTGGCTGTATCTGTTCATTTTTTCCATCAGTTAGGATTTAA
GGAACTCCACAAGGGTTGAAAcgtttttatcttcattttacAGCTGCCAT
TTTTGTTGCCATTCATGGAAAAAGCATCAAGTTGCCAGGCAACTGCTACC
ACAACGATCTGAAACAAAGTTCTGAAAGATGTGATGCCTTCATCCAATGT
GCAAATGGAGTACCTGTTCAAAACATCTGTCCAGAGATCAAAGATGCCGA
CAAGAATCCTCTCTCTGGTGGATACAAACGTCTCTTTTTCAATGAAGCCA
AGCAGGTCTGTGATTGGCCTGTTCATACTTATTGTCCCTCAGGACCAGGT
CCCGACAAACCAACGACAACGACCAAAAAACCGACAACGACTACCACCAA
AAAACCGACAACAACTACCACCAAAAAACCGATAACGACTACCACCAAAA
AACCGACAACAACTACCACCGAATTGGAAACAACAACTGAAGTAATCACC
ACGACCGAAGAACAAACGACAACTGAATTCGTAGATACAACAACTGAACC
ATTTACAACCACTGAACCATATACGACAACCGAACCAATAACGACCACCG
AGCCCTTTACAACTACCGAAGAACAAACGACGACTGAATTTGTAGAAACA
ACAACTGAACCATTTACAACCACTGAACCATATACGACTACCGAACCGAT
AACAACCACCGAACCGTTTACAACAACCGGTGAAAAAACGACAACAGAAT
TCGTTGACACAACCACCGATTATTTTACCATGACAACTGACGCAACAACC
GACTTTATAGTTACAACTACCGAATTCAAAACAACCGAACCTGATCAATA
CGTACGACGAGTTTGTTATGGTAAAGGNTCAAAATATCTGTCCAGAGATT
AAAGATGCTGACAAGAATCCTCTCTCTGGTGGATACAAACGTCTCTTTTT
CAATGAAGCCAAGCAAGTCTGTGATTGGCCTGTTCATACTTATTGTCCCT
CAGGACCAGGCCCCGACAAACCGACAACAACGACCAAAAAACCGATAACG
ACTAGCACCAAAAAACCGACAACGACTACCACCGAATTGGAAACAACAAC
TGAAGTAATCACCACGACCGAAGAACAAACGACGACTAAACTCGTAGAAA
CAACAACTGAACCATTTACGACCACTGAAACAATTACAACTACCGAACCA
ATAACGACTACCGAACCGTTTACAACCACCGAAGAACAAACGACGACTGA
ATTCGTAGAAACGACAACTGAACCATTTACAACCACTGAACCATATACGA
CTACAGAACCGATAACAACCACCGAACCGTTTACAACAACCGAAGAAAAA
ACGACAACAGAATTCGTTGACACAACCACCGATTATTTTACCATGACAAC
TGACGCAACAACCGACTTTATAGTTACAACTACCGAGTTCAAAACGACGG
AACCCGATCAATACGTACGACGAGTTTGCTACGGTAAAGACCGACGACCA
GGAAGTTTCAAAGCACCCAGAACAGGTCTTATTCGTAGCTTCACACTGAG
GCATGTTAGTGGTTTTGCCAATTGTCAAGGAGGTAGACCAGGATTCTGGA
ATTGCATTCGTGAAGGTGACTACGAATATTTGAACACCATCATCACTGTT
CAAGATTCCAGACCTGGTAAACCAAATGctgatgttgttgtttttccGCA
ACAGTTCGAATTCAACCGCATAAATGATGATGGTGAATTTATGATCAGTG
GTCTTACAGCGATCAGTGATTCTATCACCATCTTCAAAGATAAGTATGAA
GTGACCAGTGGTGATGTCATCTCCATTCATTACGGTAGTCATTATCTTAA
CAGAAACATTGGTGTTACTACCAATGGTCATTGTGTTGATGTCACTTTgg
aatatttctaaaaaacattttggaagataatttgaaaagaaaaaagaaag
gtGGAAGACTGAAGATATTCCTAAAGAATTAATGGGGGCCCATTAATGTT
ATGGAATTAATAATGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017668-exon-sc0000273-1491911889:90679..90764 | TCONS_00017668-exon-sc0000273-1491911889:90679..90764 | Clytia hemisphaerica | exon |
| TCONS_00017668-exon-sc0000273-1510915933:90679..90764 | TCONS_00017668-exon-sc0000273-1510915933:90679..90764 | Clytia hemisphaerica | exon |
| TCONS_00017668-exon-sc0000273-1575043694:90679..90764 | TCONS_00017668-exon-sc0000273-1575043694:90679..90764 | Clytia hemisphaerica | exon |
| TCONS_00017668-exon-sc0000273-1491911889:91322..93247 | TCONS_00017668-exon-sc0000273-1491911889:91322..93247 | Clytia hemisphaerica | exon |
| TCONS_00017668-exon-sc0000273-1510915933:91322..93247 | TCONS_00017668-exon-sc0000273-1510915933:91322..93247 | Clytia hemisphaerica | exon |
| TCONS_00017668-exon-sc0000273-1575043694:91322..93247 | TCONS_00017668-exon-sc0000273-1575043694:91322..93247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:90679..93247 + |
Blast
The following BLAST results are available for this feature:
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