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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017637 ID=TCONS_00017637|Name=TCONS_00017637|organism=Clytia hemisphaerica|type=transcript|length=4748bp
GAaagactatcgtaatactttcgctaggcgaaattaataagtCTGAACTG
AATCCTGAATGCAAAACAAGATTTAAGATGGCGAGTAAAGAGTTGTGTGA
TattttatatgattttgacATTGATGAATCAATACCTATCGTTTTTGAAA
ACTATATTGGTGAGAATCAAAATGAGAGTGAAGAAATCTTAATCCCAGAC
GACATCATTTCTGCTGACTTGGATATCATTGATTTTGATAGCATCATAAT
GGAAAACACTCCTCCTCCTGTCGTTGTTGAAGAAGAAAACACACCAGAAA
GTGTCACTTCTCCAGAAACTATATCTCCTGAAAGTCAGCCTTCTCCTCAA
AATCCATCTCCCAAAAATCATTCTTCAGAAGATCAGTCTGACAACCCATC
AAACATTGATACTCAAAACACAAATGCAAATAACAAATCTTATGATTATT
CAGTTCTCCAATCAAGCTTTCAATGTTATCATTATTCAACAACTGATACG
ATGGGAACATTTCATTAATAGGAAGATTTCTTCCCAAAACAACAGCATTC
CATGTCAAGTCATTATATATGGTAATAGTTATCTCAGGCATCACGTTACA
ATCTGATACTTGAAATTTACTGTATatacgagatggagtttttgaACAGA
GTAAATAGCCTTTAGCTAGAAAAAGTTTATCCAGGTTGTGTTTGTTCAAC
GTGGGACACTTTGGCATAGATAATTGAGCCTCTGTGATGCAGATTTCGCA
TTGATCATCACAAGGGAGAAAAACAGGTGGAATTTTAGTTCTATTTGCTC
TGGCATCTCTTGGCAAGTTCCTGCAGCAGTTTTTGCACAATAACTTTGGA
TATACATTTTGGTCCTCATTGAAGCACGTGATTCCATACACAGATAAAAT
TTCCTGAAATGTAaaagcaaaatggtcaaaatggtAAAATGTCATGCATA
TATCAAGGCCTGAAACTCATCTTgataatcaaaaaaaatatggtAATGCA
TGATTTATTTATCACAGATCTTTTTTCAATATATGGCTAGTCGAGTAAAT
GTTTTGAACCAGTGGTAGTAAAAGAATATGCCTGGTTTCGAGGATTGAAT
GTGGCAATCTATACCTGCAGTCCAAAAAGCAAGTTCAGGGGATGTACCAG
GATAGTCTGATAgtgtttaaatttattttctgcttaaagtaatgaaaata
acttacatctttaaaattttcacatgcTTTGAATTTAGTATATGCTGCAT
ctcttttgattttgattttacacAGCCTGCAATATTTTTCCAACTCTTTC
AAATGACCCATGGTTTTAGAACAACCCACGACAAAGAATTTTTAAGcact
tatttttatttctaactaacaacattttctaaaaaaggaaagaaaattgt
ttcatattccaacaacaaaaaaacacatTTAACAAAAATGTTCTCTGTCT
GTCTATGTTTACAAGTGCAAGCTTCGCTTCTatgatttgaaaaacaaaat
ggcggcgaacgaaaaaaattataacattctgaaatattttcaaaaagttt
tgctaTTTAGCCTTAGGGGTGGTGACTGATATAAACTGCAAAAGAAAGAT
CGATTATTGCTTGACTTATATCCAAACACCCATTTTCCAATTCTAAATAG
TAaacgaaatatttcaaatccaAAACACCACATACAAAACAAGTCTTTTT
TCACTGTCGACTTTGAAAAATgtgatattttcaaaataaaaaaagctttt
gaatccATTTTTTTTCTATGGTGTAAAAGAGGCCTTCTAGAATCTTTTCT
AGTTGATTTCTTTCTAGTATCTAGCATAATTAAGCTGTAAAGCATTGTGT
AGATTACCAGAAATAGTCGGTTTCTTTACTTCAAATTGTCGGTAATTGTC
GTTCTACCGACAATCGCACAGAAAGAGGAGAAAATCATAACAAGCTCTAA
ACGGCTATTGTTTAAAATAACAATCGCAAGTGAATAGGGAATATGTGGTC
AGCGGTTTGTTGTTTTTCCTTCTCTCTACTTCTATTTCTTTGGTAGATTA
TACTTTAAAACCAATAACTTtatttcccaaaaaaacaaaaacaaagatca
TTCAGATCTTTCATGAAACAATCATTATCTAGTGGTCACGATTTTTAACA
TGGTAGGTTGCTTTTAGGATGGCAGTTGGGGAATGACTTGTATACTTCTG
CTTTTTCATGAgaacattttgcttaaagaaaacattaactcAATTTTAAC
CTGAAAACCTCAAAATGAAGAATAATCAAAAAGACTGACATGAAGCCATT
TTATTTAGCTTTTGAATGTGGTAGaaacttcaaattttccaaaagaaaaa
attgtaacTCTCGACGTTTTATTTTGGCCGAGGTAATAAATGGGGGTGGC
ATCAGGCGTCTTGGTACAGAACTTTCATAAGGTAATATCATGAAAGTTAC
ACTTTGTTTAAAAGGACCTTAACAGTGCCTGCAAATCACGAATAAACCAA
GANCATAAGGTAATATCATGAAAGTTACACTTTGTTTAAGAGGACCTTAA
CAGTGCCTGCAAATCACGAATAAACCAAGAACTTCTGACACACCTTGAAA
ACTAGATAGTAGGGATCAAGGGGGAagttttttgaatattgaataaaTCT
TTCTTTACCAATGGGATTAAGGGGGAagttttttgaatattgaataaaTC
TTTCTTTACCAATGTTTATACTATAATACTAAAATGAGACTTAATATAAG
TTAAATTTTTAGTTAGTTAGTAATATACCACTGGGTTTACTATTTACAAC
TGGAAGTTTATTTTgtcattaaaggttttatttttataaagcgTTCCCGT
TTAATATCAGACACataatatttcatatcaggacagtgtctgcctattgt
tatattatgctgatataaacaaaaaaatgtttctttttcctctttctggc
taatcttgctccacatccgtgtcaatccaacgtgaaaaagcttgtgaatt
aaaattgatgagtaagcaaacaatatcactcttatttaaaaacaaaacct
ttaactagtaatgaacaaaaatcgttcttcgttaaaaagtgaaatttacT
TCAGATACCCTTATGGGCTGTGATTAATCTTCACAGTAGATATTCCTTCT
TTGTATTGATTATGAATTCATTTCTCTTTAATGGTTCAATTAAATATTAG
AACCATGACATTATAAACTTCTTCCTAAGAggtataatatataataaatt
cGAAATACTCTTTAAAACATAAGTATCTATTTTTACTGATACCTATATTG
TTCAataattccagaaaaaaatttctgtGCTCTTTTCATTCCAgagtgta
aaataaaaataagcaatTTGACCAAGAAAAGATGATGGTAGAGTTGTAGC
GTNATACTGATGCGATAAAACTATATTGTTCAATAATTccggaaaaaaat
ttctgtGCTCTTTTCATTCCAgagtgtaaaataaaaataagcaatTTGAC
CAAGAAAAGATGATGGTAGAGTTGTAGCGTCAATGACAACTAGTCTATCC
AAACAGCCTTCTCTTCGCTCCAGTTGCATTGGAAGTTGAAGTAAGTACTT
TTTGTAGTCCAACAAGTTGTTGTCAAAACTTACTTTTTAATACCCAGAAG
GTATTGATTATGACatccttttattttctttgagttTTACAATTTTATAT
TCTCAGACTGACTGTCGTATaatctttttcgttttttaaggTAAAAACGA
ACATTTTGGAGAAtattaaaaacgttttaaatttttccattttctgtACA
TAGATTGCTGAATAAAATGAAGATCATCGATACTTTAATACATTATTGGT
GAAGTAATAAAATCATGATTTGACCATTTTCCATTGCATGATGGAGCTGT
CTAAACCACCGACTGTGATCAGAGATGAATCATCGTGTAAGAATCGTACG
CATGTCACATGAGAGCTGTGCCCAACACCGATGCTTGCTTCAGACTGTAG
AAGTGAAAGAAAAGGAAAGATAGTAAGTGATTTCATACTGTAGGAAATGT
TGATGTTACCGTCGTAAGTTTGTTCTAATGCTGACAACCCCTTTCTAATT
CCGACATCTGTATAAATTTAGCCATAGGAATAATGGGAAGGACGGAATCG
CTCATTGAAACTACATTTCTTTACCGCCAATGAGGTTTTTTATATCCGAT
TCCAACCCTCTTATTATTCTCTCGTTTATTCGTATAAAAACGGGTGATGG
AATTAGGTGACTGTTGTCgaaattagaccaacttacagtaatAATGAAGT
TGTTGCCAAATGGTGCCGATCGACTGATTGATTTTCAAAGAACTAGACAT
TCTCCTCGAATTTTTGCAAGACTAAGCTCATGGGGACTTTGGTATTAGTA
CCAAAGACAGAAAGAATCGAATGTTAGAGTTTtaacttttgtaaatattt
tttaaagcaGTCCATAGGTAGAAAAAATACAACTCTCTTAACTGTACGAT
GTTCCATTTCTTCTGTTGGTTAtagtgtttattttttaaagcaGTCCATG
GGAAAAAACAATACAAAACTCTTAACTGATGTTTCATTTCTACATCGAGT
CAAGAGAAAAAGCAGAAAAGAATTCATGTACAAAAAGTGTATTGACAGAA
TTGAATACCTTCAATTTAACACTTGGATATTTGAACAAATTGACAGCACC
AAAATCATCTCCCGTAGCAACCAACTTCTTATTGTTTGATCGACAGCA Run BLAST on NCBI transcript from alignment at sc0000271:299240..304252- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017637 ID=TCONS_00017637|Name=TCONS_00017637|organism=Clytia hemisphaerica|type=transcript|length=5013bp|location=Sequence derived from alignment at sc0000271:299240..304252- (Clytia hemisphaerica)
GAAAGACTATCGTAATACTTTCGCTAGGCGAAATTAATAAGTCTGAACTG
AATCCTGAATGCAAAACAAGATTTAAGATGGCGAGTAAAGAGTTGTGTGA
TATTTTATATGATTTTGACATTGATGAATCAATACCTATCGTTTTTGAAA
ACTATATTGGTGAGAATCAAAATGAGAGTGAAGAAATCTTAATCCCAGAC
GACATCATTTCTGCTGACTTGGATATCATTGATTTTGATAGCATCATAAT
GGAAAACACTCCTCCTCCTGTCGTTGTTGAAGAAGAAAACACACCAGAAA
GTGTCACTTCTCCAGAAACTATATCTCCTGAAAGTCAGCCTTCTCCTCAA
AATCCATCTCCCAAAAATCATTCTTCAGAAGATCAGTCTGACAACCCATC
AAACATTGATACTCAAAACACAAATGCAAATAACAAATCTTATGATTATT
CAGTTCTCCAATCAAGCTTTCAATGTTATCATTATTCAACAACTGATACG
ATGGGAACATTTCATTAATAGGAAGATTTCTTCCCAAAACAACAGCATTC
CATGTCAAGTCATTATATATGGTAATAGTTATCTCAGGCATCACGTTACA
ATCTGATACTTGAAATTTACTGTATATACGAGATGGAGTTTTTGAACAGA
GTAAATAGCCTTTAGCTAGAAAAAGTTTATCCAGGTTGTGTTTGTTCAAC
GTGGGACACTTTGGCATAGATAATTGAGCCTCTGTGATGCAGATTTCGCA
TTGATCATCACAAGGGAGAAAAACAGGTGGAATTTTAGTTCTATTTGCTC
TGGCATCTCTTGGCAAGTTCCTGCAGCAGTTTTTGCACAATAACTTTGGA
TATACATTTTGGTCCTCATTGAAGCACGTGATTCCATACACAGATAAAAT
TTCCTGAAATGTAAAAGCAAAATGGTCAAAATGGTAAAATGTCATGCATA
TATCAAGGCCTGAAACTCATCTTGATAATCAAAAAAAATATGGTAATGCA
TGATTTATTTATCACAGATCTTTTTTCAATATATGGCTAGTCGAGTAAAT
GTTTTGAACCAGTGGTAGTAAAAGAATATGCCTGGTTTCGAGGATTGAAT
GTGGCAATCTATACCTGCAGTCCAAAAAGCAAGTTCAGGGGATGTACCAG
GATAGTCTGATAGTGTTTAAATTTATTTTCTGCTTAAAGTAATGAAAATA
ACTTACATCTTTAAAATTTTCACATGCTTTGAATTTAGTATATGCTGCAT
CTCTTTTGATTTTGATTTTACACAGCCTGCAATATTTTTCCAACTCTTTC
AAATGACCCATGGTTTTAGAACAACCCACGACAAAGAATTTTTAAGCACT
TATTTTTATTTCTAACTAACAACATTTTCTAAAAAAGGAAAGAAAATTGT
TTCATATTCCAACAACAAAAAAACACATTTAACAAAAATGTTCTCTGTCT
GTCTATGTTTACAAGTGCAAGCTTCGCTTCTATGATTTGAAAAACAAAAT
GGCGGCGAACGAAAAAAATTATAACATTCTGAAATATTTTCAAAAAGTTT
TGCTATTTAGCCTTAGGGGTGGTGACTGATATAAACTGCAAAAGAAAGAT
CGATTATTGCTTGACTTATATCCAAACACCCATTTTCCAATTCTAAATAG
TAAACGAAATATTTCAAATCCAAAACACCACATACAAAACAAGTCTTTTT
TCACTGTCGACTTTGAAAAATGTGATATTTTCAAAATAAAAAAAGCTTTT
GAATCCATTTTTTTTCTATGGTGTAAAAGAGGCCTTCTAGAATCTTTTCT
AGTTGATTTCTTTCTAGTATCTAGCATAATTAAGCTGTAAAGCATTGTGT
AGATTACCAGAAATAGTCGGTTTCTTTACTTCAAATTGTCGGTAATTGTC
GTTCTACCGACAATCGCACAGAAAGAGGAGAAAATCATAACAAGCTCTAA
ACGGCTATTGTTTAAAATAACAATCGCAAGTGAATAGGGAATATGTGGTC
AGCGGTTTGTTGTTTTTCCTTCTCTCTACTTCTATTTCTTTGGTAGATTA
TACTTTAAAACCAATAACTTTATTTCCCAAAAAAACAAAAACAAAGATCA
TTCAGATCTTTCATGAAACAATCATTATCTAGTGGTCACGATTTTTAACA
TGGTAGGTTGCTTTTAGGATGGCAGTTGGGGAATGACTTGTATACTTCTG
CTTTTTCATGAGAACATTTTGCTTAAAGAAAACATTAACTCAATTTTAAC
CTGAAAACCTCAAAATGAAGAATAATCAAAAAGACTGACATGAAGCCATT
TTATTTAGCTTTTGAATGTGGTAGAAACTTCAAATTTTCCAAAAGAAAAA
ATTGTAACTCTCGACGTTTTATTTTGGCCGAGGTAATAAATGGGGGTGGC
ATCAGGCGTCTTGGTACAGAACTTTCATAAGGTAATATCATGAAAGTTAC
ACTTTGTTTAAAAGGACCTTAACAGTGCCTGCAAATCACGAATAAACCAA
GANCATAAGGTAATATCATGAAAGTTACACTTTGTTTAAGAGGACCTTAA
CAGTGCCTGCAAATCACGAATAAACCAAGAACTTCTGACACACCTTGAAA
ACTAGATAGTAGGGATCAAGGGGGAAGTTTTTTGAATATTGAATAAATCT
TTCTTTACCAATGGGATTAAGGGGGAAGTTTTTTGAATATTGAATAAATC
TTTCTTTACCAATGTTTATACTATAATACTAAAATGAGACTTAATATAAG
TTAAATTTTTAGTTAGTTAGTAATATACCACTGGGTTTACTATTTACAAC
TGGAAGTTTATTTTGTCATTAAAGGTTTTATTTTTATAAAGCGTTCCCGT
TTAATATCAGACACATAATATTTCATATCAGGACAGTGTCTGCCTATTGT
TATATTATGCTGATATAAACAAAAAAATGTTTCTTTTTCCTCTTTCTGGC
TAATCTTGCTCCACATCCGTGTCAATCCAACGTGAAAAAGCTTGTGAATT
AAAATTGATGAGTAAGCAAACAATATCACTCTTATTTAAAAACAAAACCT
TTAACTAGTAATGAACAAAAATCGTTCTTCGTTAAAAAGTGAAATTTACT
TCAGATACCCTTATGGGCTGTGATTAATCTTCACAGTAGATATTCCTTCT
TTGTATTGATTATGAATTCATTTCTCTTTAATGGTTCAATTAAATATTAG
AACCATGACATTATAAACTTCTTCCTAAGAGGTATAATATATAATAAATT
CGAAATACTCTTTAAAACATAAGTATCTATTTTTACTGATACCTATATTG
TTCAATAATTCCAGAAAAAAATTTCTGTGCTCTTTTCATTCCAGAGTGTA
AAATAAAAATAAGCAATTTGACCAAGAAAAGATGATGGTAGAGTTGTAGC
GTNATACTGATGCGATAAAACTATATTGTTCAATAATTCCGGAAAAAAAT
TTCTGTGCTCTTTTCATTCCAGAGTGTAAAATAAAAATAAGCAATTTGAC
CAAGAAAAGATGATGGTAGAGTTGTAGCGTCAATGACAACTAGTCTATCC
AAACAGCCTTCTCTTCGCTCCAGTTGCATTGGAAGTTGAAGTAAGTACTT
TTTGTAGTCCAACAAGTTGTTGTCAAAACTTACTTTTTAATACCCAGAAG
GTATTGATTATGACATCCTTTTATTTTCTTTGAGTTTTACAATTTTATAT
TCTCAGACTGACTGTCGTATAATCTTTTTCGTTTTTTAAGGTAAAAACGA
ACATTTTGGAGAATATTAAAAACGTTTTANTCTCGTTCTGGTATTGATTA
TGACATCCTTTTATTTTCTTTGAGTTTTACAATTTTACTCTCAGACTGAC
TGTCGTATAATCTTTTTCGTTTTTTAAGGTAAAAACGAACATTTTGGAGA
ATATTAAAAACGTTTTAAATTTTTCCATTTTCTGTACATAGATTGCTGAA
TAAAATGAAGATCATCGATACTTTAATACATTATTGGTGAAGTAATAAAA
TCATGATTTGACCATTTTCCATTGCATGATGGAGCTGTCTAAACCACCGA
CTGTGATCAGAGATGAATCATCGTGTAAGAATCGTACGCATGTCACATGA
GAGCTGTGTCCAATACCGATGCTTGCTTCAGACTGTAGAAGTGAAAGAAA
AGGAAAGATAGTAAGTGATTTCATACTGTAGGAAATGTTGATGTTACCGT
CGTAAGTTTGTTCNACATGTCACATGAGAGCTGTGCCCAACACCGATGCT
TGCTTCAGACTGTAGAAGTGAAAGAAAAGGAAAGATAGTAAGTGATTTCA
TACTGTAGGAAATGTTGATGTTACCGTCGTAAGTTTGTTCTAATGCTGAC
AACCCCTTTCTAATTCCGACATCTGTATAAATTTAGCCATAGGAATAATG
GGAAGGACGGAATCGCTCATTGAAACTACATTTCTTTACCGCCAATGAGG
TTTTTTATATCCGATTCCAACCCTCTTATTATTCTCTCGTTTATTCGTAT
AAAAACGGGTGATGGAATTAGGTGACTGTTGTCGAAATTAGACCAACTTA
CAGTAATAATGAAGTTGTTGCCAAATGGTGCCGATCGACTGATTGATTTT
CAAAGAACTAGACATTCTCCTCGAATTTTTGCAAGACTAAGCTCATGGGG
ACTTTGGTATTAGTACCAAAGACAGAAAGAATCGAATGTTAGAGTTTTAA
CTTTTGTAAATATTTTTTAAAGCAGTCCATAGGTAGAAAAAATACAACTC
TCTTAACTGTACGATGTTCCATTTCTTCTGTTGGTTATAGTGTTTATTTT
TTAAAGCAGTCCATGGGAAAAAACAATACAAAACTCTTAACTGATGTTTC
ATTTCTACATCGAGTCAAGAGAAAAAGCAGAAAAGAATTCATGTACAAAA
AGTGTATTGACAGAATTGAATACCTTCAATTTAACACTTGGATATTTGAA
CAAATTGACAGCACCAAAATCATCTCCCGTAGCAACCAACTTCTTATTGT
TTGATCGACAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017637-exon-sc0000271-1575043694:300501..304252 | TCONS_00017637-exon-sc0000271-1575043694:300501..304252 | Clytia hemisphaerica | exon |
| TCONS_00017637-exon-sc0000271-1575043694:300157..300362 | TCONS_00017637-exon-sc0000271-1575043694:300157..300362 | Clytia hemisphaerica | exon |
| TCONS_00017637-exon-sc0000271-1575043694:299240..300029 | TCONS_00017637-exon-sc0000271-1575043694:299240..300029 | Clytia hemisphaerica | exon |
| TCONS_00017637-exon-sc0000271-1510915933:300501..304252 | TCONS_00017637-exon-sc0000271-1510915933:300501..304252 | Clytia hemisphaerica | exon |
| TCONS_00017637-exon-sc0000271-1510915933:300157..300362 | TCONS_00017637-exon-sc0000271-1510915933:300157..300362 | Clytia hemisphaerica | exon |
| TCONS_00017637-exon-sc0000271-1510915933:299240..300029 | TCONS_00017637-exon-sc0000271-1510915933:299240..300029 | Clytia hemisphaerica | exon |
| TCONS_00017637-exon-sc0000271-1491911889:300501..304252 | TCONS_00017637-exon-sc0000271-1491911889:300501..304252 | Clytia hemisphaerica | exon |
| TCONS_00017637-exon-sc0000271-1491911889:300157..300362 | TCONS_00017637-exon-sc0000271-1491911889:300157..300362 | Clytia hemisphaerica | exon |
| TCONS_00017637-exon-sc0000271-1491911889:299240..300029 | TCONS_00017637-exon-sc0000271-1491911889:299240..300029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:299240..304252 - |
Blast
The following BLAST results are available for this feature:
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