TCONS_00017550 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017550
Unique NameTCONS_00017550
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017550 ID=TCONS_00017550|Name=TCONS_00017550|organism=Clytia hemisphaerica|type=transcript|length=384bp
TGATTTTCGCACAAACggcagattgaaagtaaaattaatcgccagatttt
gaaaaatatgccgcgtgaaaataaagaaagcgATAAATTAAATCAGTCGT
TCCGGAagcactttttcttgcttgaggtTGCTGGAGATACCTTCTCTATC
CCCATATGTTTAAACTAAAACTCGGTGCTGTAGTTATACAGATATTCTTT
TAACATAGTCGACCATTGCAGCACATCCTAAATCGAGTGTTATAACCTGT
TTGTCCGCAGCAGGCATTGTTAGATCCTTTTAAGCCCAATTTGCCACCGC
AGCACATCCTGAATCGAGTGTTAAAACCTGTTTGACCGCAACAGGCATTG
TTAGATCCTTTTAAGCCCAATTTGCCACCGCAGC
Run BLAST on NCBI

transcript from alignment at sc0000269:344073..350258-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017550 ID=TCONS_00017550|Name=TCONS_00017550|organism=Clytia hemisphaerica|type=transcript|length=6186bp|location=Sequence derived from alignment at sc0000269:344073..350258- (Clytia hemisphaerica)
TGATTTTCGCACAAACGGCAGATTGAAAGTAAAATTAATCGCCAGATTTT
GAAAAATATGCCGCGTGAAAATAAAGAAAGCGATAAATTAAATCAGTCGT
TCCGGAAGCACTTTTTCTTGCTTGAGGTTGCTGGAGATACCTTCTCTATC
CCCATATGTTTAAACTAAAACTCGGTGCTGTAGTTATACAGATATTCTTT
TAACATAGTCGACCATTGCAGCACATCCTAAATCGAGTGTTATAACCTGT
TTGTCCGCAGCAGGCATTGTTAGATCCTTTTAAGCCCAATCTACCACCGC
AGCATATCCTGAATCGAGTGTTATAACCTGTTTGACCGCAACAGGCATTG
TTAGATCCTTTTAAGCCCAATTTGCCACCGCAGCATATCCTGAATCGAGT
GTTATAACCTGTTTGACCGCAGCAGGCATTGTTAGATCCTTTTAAGCCCA
ATTTGCCACCGCAGCATATCCTGAATCGAGTGTTATAACCTGTTTGACCG
CAGCAGGCATTGTTAGATCCTTTTAAGCCCAATTTGCCACCGCAGCATAT
CCTGAATCGAGTGTTATAGCCTGTTTGACCGCAGCAGGCATTGTTAGATC
CTTTTAAGCCCAATCTACCACCGCAGCATATCCTGAATCGAGTGTTATAA
CCTGTTTGTCCGCAACAGGTATTGCTAGATCCTTTTAGGCCCAATTTGCC
ACCGCAGCACATCCTGAATCGAGTGTTATAACCTGTTTGACCGCAGCAGG
CATTGTTAGATCCTTTTAGGCCCAATTTGCCACTGCAGCACATCCTAAAT
CGAGTGTTATATCTTTGATAACCACACACTGCTCTGCGTTCACGGCTGTG
AGATTCTGAAAGGGAAACAGAGCATGTTGTTGAATGTTTGAATGTGGATC
TTTAAATGTCAGGTTTCCTGTTTTAATTTTACTATTCCTTCTCATAGATA
GAAAGGATGAGATGATATAAGAACAAGGGAAGATGGATTTGTTGTTTGTA
ACCTGGTTGTTAAAAAGGCAAAATCTAGTTTTCAAACAGGAAACCTTATG
TTTCATTAGAGTTACTGGGTTCGAACATGTTACATATTTACCTCCTTCCT
TCAACTCATTTGAACTTGTTTGTTGAAGAACAAAACAAACCAGAAAAAGA
AAAACGATTTTCATCATGATACCAAGAGTTAACTTTGTTGTCTGCTTCTT
GTGGTTTATATCTTCTCTGTCTGATGGTGAGCTTCTTAATACTGTTCAAT
TCTTGCGCTTCTATTTATACTGTGACAATGAACAATGGAAATGAAGTCAT
CGTCATATTTGGTCTTCTAAAAACGTATAAGCTAGTCAAATTTAGATTTC
TTGGAATTTCAGCGTTTTTTTTTTCAGGAGTGTCAGCGTTTCAGCATTTT
TTCTGTGATATGTTTTGATGACGTAAATGACAGTTGATATCAAAACATTA
AGAACTGTGTTATTAGATGGTGAAAAAAATAATATTACTCAACAACTCTT
AAGGGCTCTGACCATAGTGAATTTTTCATAATTGTCGTAATTAAAATGTG
TTTTCTGACTGATGTAACCAACAAAACTATGGCATATTATACATTTTCTG
TTAAGCCAACTATTCCTGAATCTGAAAATTCAAAAATTGCATTGAAAAAA
TTTGATGAAGAAGAAAATGAAGACATTTGCAAAGACAGTATTTCAACTTT
GAGGAGCTTATTTTCGGCGAAGTAAAAAGATTTTGAAAAAATTTTTGCAC
TAGATGGTGTATCTTTAACCAAACTAACAATAGATTTTCGGAAAATTTTT
GTAAAACTTTCTGTCTCAAAATCTTAAAATAAGTGGCTTTTGACCAATTC
TTCATCCCATTTTTTTGCACAAATAGAGTCGTAACTTTTGAAACATTGAT
TTAGAAAATTTATCCGAAAATATTTAGATAGTTCAATCTTTTGCAGTAAA
AGAGGGTAATATAACATTTTATTGACATCTTTCTAAGGTTCATAACGTCA
TTTTTGTAATTAAACTGTTAATTACTCTTGATAGAATAAATTCAGAAACA
ACTTATAAAGACGATTTTTTGTTAAAAGTGTCAAGGAACTCAAAACAAAA
GTTTTATCTCTAAATCTGCGTATTCGATCTTTTGACTATGGTCAGAGCCC
TTTAAAGCTTCCGTGTTCCTTAAAGTGAAAATCTTTGATAACCTTTGACA
CAAAACTTTTCAAGTGAGCACCAAATATAAATTTGAATTACCCAAAGGAC
AGCTGGCCGAACTAAAATTTTCACATTCACCTCATATTTACTTTCCAGAT
CACTTTTTCAGACTTTTCAATCTTGGAAATTTAAGGGGGGGCTCGAGTCC
TCCTCTCAGATGCTCCCCATCTCCTTAAAATACAAAGATGCTTAAAAGGT
TAACTACCACTACACTTTAAGGTTCGTTTCCAAGTAACTCGAGTTTTTAT
GCTGCAAAAAGAATTCCGGCAAATAAATGGAAATGGGACATATGCCGACA
TTTTTATTTCAAATGTGTGCCGCCGCAAATAAGAAAATATAATGACTTTT
TTCGCGTGGACCGAAAAAGCAGGCCGACATAGGTCAAGCTTTACTTCTAT
AGGACCTTGAATAGGAAGATCTCATATCATACCTTAATGCATTAATGAGA
AATTTTTGAAAAAGACAAAGAACTCGAAATATAAATTTTCGTTTCGACCA
TTGATTGTTATTACTCGGTAAATACAATTTTTTATATCGTATTTGATTTT
GGCGCGTACGCACCTCAATTTAAAGAATATGTAAAGCTTGAGCTTTATTA
GGTTGGTTAAGCTGAAAAATCACTTAAAGCTTAACAATATTGCTGCTTGC
ACTGTCAGTAACTTTCAAAGGTTCCAATTATCTCCGTTATTTAGAAATGT
CATAAAGCAAGTGCGCCAATTACTACGGAGCTAATAAGAGTGTACATAAA
GTAAATGCTGTCTGATTAAATTGCGTGGCTTAGTATTAGGGAGATATAAA
ACGGTTGATGCAAGAATTTATGCGGGAAATATTTTTCCGATTTTCCGAAC
ATTTGATTCCGAATCGGGCGATAAAACTTTCACTTTTTTGGTCGTATTTT
TCCCAAAATATATCATTTTAGTTCAATTTCCTATTTCAAATAGAAAATAC
AAATTTGACTTATTCTTCAATTTTGTTTCACATATTGAAAAAAGAAATTA
GAAAAATTTTCAATTTTCTATTCAATTTCAAAAAGAAAATTGAATTATAC
TTTCGATGCACGCATTGTACTACAATTTAATATATCTTGTACTCTTGTAT
TTTTTTTGGTCATCATGATTTTTGATTTTTTTCTTTTGCCAACAGGTCAT
ATTATTGTATTAAAGTCTCCAAAAATATAATTGACAGTTTCGAAAATGAA
GATAAATAGGGAAGATTTTTCGGACGGGCCCAAAATTATTTAAATTACTC
TTTTCTGAAGCTGTATTTTTTTTACCTAAAGTTACAATCGATTAAAATGG
GCTAAATGGACTCATATTACGGCTCTATTAGGGCTCTAACTTTTAATCCA
AGAAGGATATGCAAAATCTAAATACATTTTAACGTTCAAAGTTTCAACAA
AACACAGATTGAAGATTTTCTTCCATTGGATAAAAATTTCCAATAAAAAA
AATCAAATTCAGCCACTCAGAATTGTCTTTCCAATAAGGTATAACTTGAA
TCTTATCGTTTTACCCTTCAAAAGCATTTTGTGTAAATGTGCAATTGCCA
AACTTTTGGAAAAGACTTCGATTGGATTGATTATAAATGATTTTTGTAGG
ACAGAAGGTAGCCTGGATAGCAATTAAACAAACCAAAAGGACAAAACTGT
ACGATGTTAACGCCATCTATGAAAATAATGAGTTACATAAAACATTGGTT
TCACTTACTATAATTTCTGCAGATGCTCTGTGCAAAAAGTGCTACAAAAT
TCCATGAAAACTAACCAAACTGTTTATTCACGGTTGTGTGGCCAAGATTA
CTAGGTTTGTGTGGGGGCGGGTATGTTCGAGCCAAATGGTTTTTGTACCC
CTTTGAGAGACTTTCGAGGGTGTAAAAAAGGGACCTTTATAGTTTACACA
TATCCGAAACTTTGCTTTACTTGGAGATGATTGAGGTTTTTACTATTTTT
ACTAATGTGGAATTTGTAACTATAGTTAAGTTTATAGAAGTGCTAAAGTT
TTGGACATTTACAGTAAAGATAGCATAAATAACTATGAAACAAACTTCAT
GTAATGGCCCCAAACTTCATGTAATCACCGAAAATTTTCGGTGCTAGAGT
GTGATTTTGAAAATAAAAGTTTTACCTTTTCAATAGGTTTATTGTTATAG
TTTTCCCTTGTTATAACTGTTGTGATTTCTTCCAGGCTCCGAACTGCCAG
CCTGTCCTATTTATACTCCTCCAGAAACCCATTGTTACAATTTTGTCCTA
GGTGAAGGAGATCTTTTCAATTTTCATCTAAGATTTTTGAAGATCCCAAA
AAATGAAAATTTAAATTCATAAAACCTTTCGCAGCTGACTCCAAAAACGT
ATTCAAAAAACCAGCAGGAGCGCAAATCAGACTACAAAGTGTCTAAAGAA
TATAAGAGAGTCTAGAGAATATAAAGTTTTGTTCCCTTTATGTTTTCTAT
GATCCAATAAAGAGAGGTAGCTACTTTACGAAGGATAAACACTTTTAAAT
TTCGTTTGTTCAGCGTTTTGCTTTCTATTAGTTATTTTTCAAGTGCTTTG
TTTTTCATGTGTTTCTTCTTCCTAGAACCATAGTCTGTACCAAGCCCTAC
TATTTTGAAGTAGTAACAGATAGCTGAAAAGCAATCAATTTTCTTTGTGT
GGTATTGTACCCTATACATACAAACGTCGAGTGACAGTACGTTAAGGGGG
CCGTTAATGCAAGATCGTTATTCCTTATCAAGAGTTAAACATAAACATTC
CATATTTTAAGGGATCAAGAATGAAAATTTTATTTTTACATGAATATAAC
AATACATACACAATACAATACTATAACAATACATAAAAAGATTGCTCTAT
AGAAATACAAAATAAGAAATAACATTTTCAATATCATTTTGCTCCTTTTA
TTTCTACAAATCCTTGATAAGAGTTAATACCATTGAGTTTAAAGTCCTGA
AGGGGCTAGAATTGAAACTCTTTGATGGAATTAAAGCGTGATTTTCGCAC
AAACGGCAAATTGAAAGTAAAATTACTCGCCAGATTTTGAAAAATATGCC
GCGTGAAAATAAAGATAGCGATAAATTGAATCAGTGGAGATGCCTTCTCT
AGCCCCATATGTTTAAACTAAAACTCGGTGTTGTAGTTTATACAGATATT
CTTTTAACATAGTCGACCATTGCAGCACATCCTAAATCGAGTGTTATAAC
TTGTTTGTCCGCAACAGGCATTGTTAGATCCTTTTAAGCCCAATCTACCA
CTGCAGCATATCCTGAATCGATTGTTATAACCTGTTTGACCGCAGCAGGC
ATTGTTAGATCCTTTTAAGCCCAATTTGCCATCGCAGCACATCCTGAATC
GAGTGTTATACCCTGTTTGACCGCAGCAGGCATTGTTAGATCCTTTTAAG
CCCAATTTGCCACCGCAGCACATCCTGAATCGAGTGTTATAACCTGTTTG
ACCGCAGCAGGCATTGTTAGATCCTTTTAAGCCCAATTTGCCACCGCAGC
ACATCCTGAATCGAGTGTTATAACCTGTTTGACCGCAGCAGGCATTGTTA
GATCCTTTTAAGCCCAATTTGCCACCGCAGCACATCCTGAATCGAGTGTT
ATAACCTGTTTGACCGCAGCAGGCATTGTTAGATCCTTTTAAGCCCAATC
TACCACCGCAGCATATCCTGAATCGAGTGTTATAACCTGTTTGACCGCAG
CAGGCATTGTTAGATCCTTTTAAGCCCAATCTGCCACCGCAGCATATCCT
GAATCGAGTGTTATAACCTGTTTGACCGCAGCAGGCATTGTTAGATCCTT
TTAAGCCCAATTTGCCACCACAGCATATCCTGAAGCGAGTGTTATAACCT
GTTTGACCGCAGCAGGCATTGTTAGATCCTTTTAAGCCCAATTTGCCACC
GCAGCACATCCTGAATCGAGTGTTAAAACCTGTTTGACCGCAACAGGCAT
TGTTAGATCCTTTTAAGCCCAATTTGCCACCGCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009808XLOC_009808Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017550-exon-sc0000269-1575043694:349996..350258TCONS_00017550-exon-sc0000269-1575043694:349996..350258Clytia hemisphaericaexon
TCONS_00017550-exon-sc0000269-1575043694:344073..344193TCONS_00017550-exon-sc0000269-1575043694:344073..344193Clytia hemisphaericaexon
TCONS_00017550-exon-sc0000269-1510915933:349996..350258TCONS_00017550-exon-sc0000269-1510915933:349996..350258Clytia hemisphaericaexon
TCONS_00017550-exon-sc0000269-1510915933:344073..344193TCONS_00017550-exon-sc0000269-1510915933:344073..344193Clytia hemisphaericaexon
TCONS_00017550-exon-sc0000269-1491911889:349996..350258TCONS_00017550-exon-sc0000269-1491911889:349996..350258Clytia hemisphaericaexon
TCONS_00017550-exon-sc0000269-1491911889:344073..344193TCONS_00017550-exon-sc0000269-1491911889:344073..344193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:344073..350258 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132702	0.264228	0	0.14161	0	0.962247	0	0	68.4037	176.577	70.2797	57.6594	17.7301	37.3973	29.4273	29.9284	16.6651	16.0226	37.8242	115.893	27.9363	46.2641	61.0621	84.0639	0	3.17589e-08	294.404	194.796	1180.37	812.101
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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