TCONS_00017375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017375
Unique NameTCONS_00017375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017375 ID=TCONS_00017375|Name=TCONS_00017375|organism=Clytia hemisphaerica|type=transcript|length=1643bp
gaatacccagTAGGGtgagttttatattttatattttatatttggttaac
agaaaaaaagcttcttcctttgttagacttaaaaattaaactttgAGGCA
AAACTGGAATTTTAGTTCCAAATGTTCATTTAAAAGTGCATCCAAAAACA
TTTCCGAAATCTCATTCAATGCTCTCCGATTCACGGATGAGAATGTGGAA
GAATTTTGCCAGATTGTCTTACCAAAGAAGTGTCGAGTGTCTTTTACACA
TGTCATGAGAGATCCAGACGACCATTACCACGTTGAAACTGAAACAGATG
AGAGTGATTATGGGTACACAGTCCCTTGGGAAATATTTCGCGCTCACAAA
TTCACTATACGAGACATCGAGACTTTTGTTTGATATGATATCAAGATCTC
TTTCATACCAAGTAGTGTTTTGATGTACCAGCTagacatttcaaatttta
tgaagTTTATCCCTGCGCTGCACAGAGTTGTTTTTAATGTTAAGACCAAT
CAGGTAGTTTCTAGAAAAACTGCttttaagttttgttaaaaatttgaaat
aattttgtttaCATACACGTTTTTTTTTATATAAGGAACCTTAACTTTGC
TCTgagcctggagttccttatttttacagaaaatttcagcctcaaagttc
cttttgagttccttatttacatagctagTTCAAGTGAAAACTCTTACTTT
TACTGTTCCTCagaacttgttttcttattcttagcctgagcagttcctta
acaattccttattttttggactactttcagcctcgagttccttataaacg
tgttccttataaaaaaaaaacgtgtatgttatTTTGCTAatcaagaattt
ttttgtttaacaaagaaagtaaataaaaaaaggaaaattgacggaaaaac
aaaaatgaaaaatgctaaGTAACCATAATCAAATCAACTGAATTTGACGC
AAACAAGAGCAAAAAATGGGTAAAgcaaagaaatcaagaaagttTGCAGC
CGTCAAACGGATGATCAACCCAAAAGATCAACGAATaaaagcaaatcaag
aaaagaaagaagcaGAACTTAAAAAGAAGGAAGAAAACAAAGTTCGCCGA
GTggAGCAATCATCTTCAGCATTGTTTTTCCAATACAACACACAACTAGG
CCCTCCGTACAGAGTGCTGGTGGACAccaatttcatcaatttttcaattc
aacaCAAATTAGATATCTTTCAATCCATGGTAGATTGTCTTTACGCAAAA
TGTATCCCCTACATCACAGATTGTGTGATGGCTGAAATCGAAAAACTGGG
ATCACATTATCGTGTTGCTCTAAGAGTGGCAAAAGATCCTCGTTTTGAAC
GTTTACCGTGTATGCACAAAGGGACGTATGCCGATGACTGTCTTGTTAAC
CGAATTTCACAGcaCAAATGTTACATCGTGGCGACgtgtgatcgtgattt
gaaaagGAGGATACGAAAAGTTCCTGGAATCCCTATCATGTATTTGTCCA
AACATAAatataGCATTGAACGAATGCCGGACGCTTTCGGAGctccaaaa
aattaaaatcaccaACAAAAGACagattttatatttatttttactggatt
ttttaaaggaaatacatttttaacaatCGATGCcataataaaa
Run BLAST on NCBI

protein sequence of TCONS_00017375-protein

>TCONS_00017375-protein ID=TCONS_00017375-protein|Name=TCONS_00017375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MGKAKKSRKFAAVKRMINPKDQRIKANQEKKEAELKKKEENKVRRVEQSS
SALFFQYNTQLGPPYRVLVDTNFINFSIQHKLDIFQSMVDCLYAKCIPYI
TDCVMAEIEKLGSHYRVALRVAKDPRFERLPCMHKGTYADDCLVNRISQH
KCYIVATCDRDLKRRIRKVPGIPIMYLSKHKYSIERMPDAFGAPKN
Run BLAST on NCBI

transcript from alignment at sc0000266:351869..356641+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017375 ID=TCONS_00017375|Name=TCONS_00017375|organism=Clytia hemisphaerica|type=transcript|length=4773bp|location=Sequence derived from alignment at sc0000266:351869..356641+ (Clytia hemisphaerica)
gaatacccagTAGGGtgagttttatattttatattttatatttggttaac
agaaaaaaagcttcttcctttgttagacttaaaaattaaactttgAGGCA
AAACTGGAATTTTAGTTCCAAATGTTCATTTAAAAGTGCATCCAAAAACA
TTTCCGAAATCTCATTCAATGCTCTCCGATTCACGGATGAGAATGTGGAA
GAATTTTGCCAGATTGTCTTACCAAAGAAGTGTCGAGTGTCTTTTACACA
TGTCATGAGAGATCCAGACGACCATTACCACGTTGAAACTGAAACAGATG
AGAGTGATTATGGGTACACAGTCCCTTGGGAAATATTTCGCGCTCACAAA
TTCACTATACGAGACATCGAGACTTTTGTTTGATATGATATCAAGATCTC
TTTCATACCAAGTAGTGTTTTGATGTACCAGCTagacatttcaaatttta
tgaagTTTATCCCTGCGCTGCACAGAGTTGTTTTTAATGTTAAGACCAAT
CAGGTAGTTTCTAGAAAAACTGCttttaagttttgttaaaaatttgaaat
aattttgtttaCATACACGTTTTTTTTTATATAAGGAACCTTAACTTTGC
TCTgagcctggagttccttatttttacagaaaatttcagcctcaaagttc
cttttgagttccttatttacatagctagTTCAAGTGAAAACTCTTACTTT
TACTGTTCCTCagaacttgttttcttattcttagcctgagcagttcctta
acaattccttattttttggactactttcagcctcgagttccttataaacg
tgttccttataaaaaaaaaacgtgtatgttatTTTGCTAatcaagaattt
ttttgtttaacaaagaaagtaaataaaaaaaggaaaattgacggaaaaac
aaaaatgaaaaatgctaaGTAACCATAATCAAATCAACTGAATTTGACGC
AAACAAGAGCAAAAAATGGTAAGTTCCCCTAACTTTCATTTCAAtcaatt
tgaattttcaagtgcAGTGTAGAAAATTAAATGGGGTTTGAGGGTTTTGA
ATAGTACAACTTTGTGGATTGCcaattttttctcttattttctttctttc
gaaATGTTCCACTTAGGAGTACCTTTCCCACAACAATCATATCAAACaac
caatatttatatttttttccgatttccttcaaaaaaatattccaCTTTGG
AGTACCTTTTCAACAGCACTAGTTCCATACTAAACAACTTTTTAATTACC
TTAGGGTAAAgcaaagaaatcaagaaagttTGCAGCCGTCAAACGGATGA
TCAACCCAAAAGATCAACGAATGTAAGACCTTAACTGTACActattttta
tataagaacaatttcataagaatgaTGAGGCTCAGAATcgtaagaacaat
ttaagaacaatgctgggCCTGAATTTACtcaattttaagcaatttaagcT
TGGTCCTCACTTGTGCAAAAAACCGCGTTTAAGTGTGTCTAAGTGCGTTT
AAGTGCGTCGAACACACTTTTGCTTTCTAGTGAGTACGTTCGCTAAACGC
ACTTAAGCGCACTTAGACGCACATAAACGTCTTTATTTTGCTAGGCGCAC
TTAAACGCGAATATCAAAGTGTAAACACTATTCAgtccttttgaaatttg
aagagAGAGGGGGATTTCTTCATCGTGTTTAAGTGCGCCTCTGGTTGGTA
GAGGAGTCAGCCTTATCAAGGACTTTTCCcgttttaatttttcagaaaag
caaatcaagaaaagaaagaagcaGAACTTAAAAAGAAGGAAGAAAACAAA
GTTCGCCGAGTGTAAGAATCAACATAGCCATGTCATTTTTTGGTAGTTTT
CATTCATAACTACACTTTAGCCTGAACTCtagtttttgctattttctccA
CTCGCTCAATTTGTGCaggaaaaagtttttggctgaattcacggtgaaaa
gctgcaacagttcaataataaattatatcattgaagtttttcaccttgAA
TTCACCCAATATcacccaaaagatttttttttacttttcctaGACCGAGG
AGGTTGACGCAGCACTTCATTTTCCATCTAAaccaaacttttattttttt
ttttacagggAGCAATCATCTTCAGCATTGTTTTTCCAATACAACACACA
ACTAGGCCCTCCGTACAGAGTGCTGGTGGACAccaatttcatcaattttt
caattcaacaCAAATTAGATATCTTTCAATCCATGGTAGATTGTCTTTAC
GCAAAATGTGAGTTTGTAAAACACATATTTCCTATTAGtggattcatgta
aaaaagtcacgaaaaacgtcgagaaagtctctgattggctaaaatatTGC
ACATACaagcatattttttcaaaatatccagagtatgaggtaatctttaC
ATGCCTCCGCgaatcaaaagtttgtttactcgacgttttttcgtcacttt
tgtatgaatctgctaataggaaatatgTGTATTCTCAATTGACTTTACCT
GAGATATTTTCCTTCCCATCTCCTTATGAGGGTCTATGAGGTTTTCTCCA
TCTCCATCGAACCGTTAAAATAAGCTTATTATAACTTTCCGCATCTATGC
TTACATCTGCGAATTAACATCAATTTGCTTACCCCATATTAAAACAAGAG
AAAGAACATTCTCTCCTTTTTGGCGCTGCGCCAGcacaaattttaagaaa
tcCTTTTTGTTTATTCTGCTATGTCAGCATAGAGGCGCGCCTCTTTTCTA
TGCCATAAAGAAGAATATCTTTAAAGAAGAAATTAACGATGGTCTTAAAC
TTCTTTTATTATCCCCTGTAAACAGGTATCCCCTACATCACAGATTGTGT
GATGGCTGAAATCGAAAAACTGGGATCACATTATCGTGTTGCTCTAAGGT
AAGCATTTATTGATATCGTGATGAGAAATTCTATTTCACTTATGGCTAAA
CAAGTTTCTTGGGCTAAATTAACCCAAAGTCAGATAAAAGGTAAGATCTT
GTCACTAATAATAATTAATAGTTAATAATCATTCTGTACTTTATACATTT
TTTCGTAGAGTGGCAAAAGATCCTCGTTTTGAACGTTTACCGTGTATGCA
CAAAGGGACGTATGCCGATGACTGTCTTGTTAACCGAATTTCACAGGTAA
AAATGATGTCATCCTTTGGAGCCAGGGAGCTaatagagtctctttaactc
taacctctataacttgaatgtctcCACAACTTGAAAAAGTTTTCTCGTCC
ATTCAGttgaaaatgctttaaaaatcttactccgtaactcgaaattcttt
aactcgaacaaatttgtgctcCCCTTACGGGTTCGAGTTTATAAAGATTC
CAATGTACCTTTATATGTGGTTGTTGAAAAGggattttcattatttcatt
ttcagcaCAAATGTTACATCGTGGCGACgtgtgatcgtgatttgaaaagG
AGGATACGAAAAGTTCCTGGAATCCCTATCATGTATTTGTCCAAACATAA
GTAAGATATTCTTCAGAAGTGAAAATTCATTCATCATTTTATAACTGAGA
TTACAAGGAGAATCCGGCATACAGACATTTTCTAATGGTGGTACTGGACG
CTACTGCCACCTCCAAAGCCTCCCCCACCTTCATAACTCTATCTTTCAAA
TGATCAACGACCCAGAATGTTtaattgcttttttttatttttttttttca
gatataGCATTGAACGAATGCCGGACGCTTTCGGAGGTAAGTTTCATTCT
CGGAAATTTTTTCTCAACTGCAAACCTCAACTGTAtcataccgggtgcgc
cacaaaaaattttctctcttttaaactaaatttctcgaaatctaaaattt
ttaaaagaaccatttctatttcattggaaagaagaaagataaacttaaat
tttgatgcgtcatttattaaattcgaatcattagatcaaaagttatgttc
aattgAACAAAAAAGTTACTTTCAAAAAGTGcttgaaaacgttaaaaata
gacctatcaaattaaacagaagcataattacatgatacatcagtattttc
gaatcagtcattaaaaaatgataattagctttCGAAATaatcttttgtta
tataaaggaaggttgaatttcaataaaaggaagaaaattcgtcgaaaaag
gccaaaaaatctggtaaaattctttatacatcaaatatgggtttcgaggt
taatccagccttacatagactttttCCGGTCTataaccaaaaatctgagg
aaaatttaggtaaaagtaaattaaatttattttgatgaatATTTTAAACT
CTTGttgacccttcagtttcaaaatttatgtgttctTAATCATGTAAGGG
CTTTTGCGACTACCAAATTTTAAATAcaaatttgataggtcaattttcaa
cgtttccgagcactttctgaaagtaacttttttattcaattgagcataac
tttcgatctaatgaaccgaatttaataaatgacccatcaaaatttaagtt
tatcttttttctttccaatgaaatgggagtggttcttttaaaatttttgg
attttgagaaatttagtttcaaagagagaaacttttttgtggcgcacccg
gtatcaaATTTTTAACTGAAATTTTAATGACCCATAGAATGAAATTAACC
TATTGACATCTTTCTTTTTCAgctccaaaaaattaaaatcaccaACAAAA
GACagattttatatttatttttactggattttttaaaggaaatacatttt
taacaatCGATGCcataataaaa

Coding sequence (CDS) from alignment at sc0000266:351869..356641+

>TCONS_00017375 ID=TCONS_00017375|Name=TCONS_00017375|organism=Clytia hemisphaerica|type=CDS|length=5319bp|location=Sequence derived from alignment at sc0000266:351869..356641+ (Clytia hemisphaerica)
ATGGGTAAAgcaaagaaatcaagaaagttTGCAGCCGTCAAACGGATGAT
CAACCCAAAAGATCAACGAATaaaagcaaatcaagaaaagaaagaagcaG
AACTTAAAAAGAAGGAAGAAAACAAAGTTCGCCGAGTggAGCAATCATCT
TCAGCATTGTTTTTCCAATACAACACACAACTAGGCCCTCCGTACAGAGT
GCTGGTGGACAccaatttcatcaatttttcaattcaacaCAAATTAGATA
TCTTTCAATCCATGGTAGATTGTCTTTACGCAAAATGTATCCCCTACATC
ACAGATTGTGTGATGGCTGAAATCGAAAAACTGGGATCACATTATCGTGT
TGCTCTAAGAGTGGCAAAAGATCCTCGTTTTGAACGTTTACCGTGTATGC
ACAAAGGGACGTATGCCGATGACTGTCTTGTTAACCGAATTTCACAGcaC
AAATGTTACATCGTGGCGACgtgtgatcgtgatttgaaaagGAGGATACG
AAAAGTTCCTGGAATCCCTATCATGTATTTGTCCAAACATAAatataGCA
TTGAACGAATGCCGGACGCTTTCGGAGctccaaaaaattaaATGGGTAAA
gcaaagaaatcaagaaagttTGCAGCCGTCAAACGGATGATCAACCCAAA
AGATCAACGAATaaaagcaaatcaagaaaagaaagaagcaGAACTTAAAA
AGAAGGAAGAAAACAAAGTTCGCCGAGTggAGCAATCATCTTCAGCATTG
TTTTTCCAATACAACACACAACTAGGCCCTCCGTACAGAGTGCTGGTGGA
CAccaatttcatcaatttttcaattcaacaCAAATTAGATATCTTTCAAT
CCATGGTAGATTGTCTTTACGCAAAATGTATCCCCTACATCACAGATTGT
GTGATGGCTGAAATCGAAAAACTGGGATCACATTATCGTGTTGCTCTAAG
AGTGGCAAAAGATCCTCGTTTTGAACGTTTACCGTGTATGCACAAAGGGA
CGTATGCCGATGACTGTCTTGTTAACCGAATTTCACAGcaCAAATGTTAC
ATCGTGGCGACgtgtgatcgtgatttgaaaagGAGGATACGAAAAGTTCC
TGGAATCCCTATCATGTATTTGTCCAAACATAAatataGCATTGAACGAA
TGCCGGACGCTTTCGGAGctccaaaaaattaaATGGGTAAAgcaaagaaa
tcaagaaagttTGCAGCCGTCAAACGGATGATCAACCCAAAAGATCAACG
AATaaaagcaaatcaagaaaagaaagaagcaGAACTTAAAAAGAAGGAAG
AAAACAAAGTTCGCCGAGTggAGCAATCATCTTCAGCATTGTTTTTCCAA
TACAACACACAACTAGGCCCTCCGTACAGAGTGCTGGTGGACAccaattt
catcaatttttcaattcaacaCAAATTAGATATCTTTCAATCCATGGTAG
ATTGTCTTTACGCAAAATGTATCCCCTACATCACAGATTGTGTGATGGCT
GAAATCGAAAAACTGGGATCACATTATCGTGTTGCTCTAAGAGTGGCAAA
AGATCCTCGTTTTGAACGTTTACCGTGTATGCACAAAGGGACGTATGCCG
ATGACTGTCTTGTTAACCGAATTTCACAGcaCAAATGTTACATCGTGGCG
ACgtgtgatcgtgatttgaaaagGAGGATACGAAAAGTTCCTGGAATCCC
TATCATGTATTTGTCCAAACATAAatataGCATTGAACGAATGCCGGACG
CTTTCGGAGctccaaaaaattaaATGGGTAAAgcaaagaaatcaagaaag
ttTGCAGCCGTCAAACGGATGATCAACCCAAAAGATCAACGAATaaaagc
aaatcaagaaaagaaagaagcaGAACTTAAAAAGAAGGAAGAAAACAAAG
TTCGCCGAGTggAGCAATCATCTTCAGCATTGTTTTTCCAATACAACACA
CAACTAGGCCCTCCGTACAGAGTGCTGGTGGACAccaatttcatcaattt
ttcaattcaacaCAAATTAGATATCTTTCAATCCATGGTAGATTGTCTTT
ACGCAAAATGTATCCCCTACATCACAGATTGTGTGATGGCTGAAATCGAA
AAACTGGGATCACATTATCGTGTTGCTCTAAGAGTGGCAAAAGATCCTCG
TTTTGAACGTTTACCGTGTATGCACAAAGGGACGTATGCCGATGACTGTC
TTGTTAACCGAATTTCACAGcaCAAATGTTACATCGTGGCGACgtgtgat
cgtgatttgaaaagGAGGATACGAAAAGTTCCTGGAATCCCTATCATGTA
TTTGTCCAAACATAAatataGCATTGAACGAATGCCGGACGCTTTCGGAG
ctccaaaaaattaaATGGGTAAAgcaaagaaatcaagaaagttTGCAGCC
GTCAAACGGATGATCAACCCAAAAGATCAACGAATaaaagcaaatcaaga
aaagaaagaagcaGAACTTAAAAAGAAGGAAGAAAACAAAGTTCGCCGAG
TggAGCAATCATCTTCAGCATTGTTTTTCCAATACAACACACAACTAGGC
CCTCCGTACAGAGTGCTGGTGGACAccaatttcatcaatttttcaattca
acaCAAATTAGATATCTTTCAATCCATGGTAGATTGTCTTTACGCAAAAT
GTATCCCCTACATCACAGATTGTGTGATGGCTGAAATCGAAAAACTGGGA
TCACATTATCGTGTTGCTCTAAGAGTGGCAAAAGATCCTCGTTTTGAACG
TTTACCGTGTATGCACAAAGGGACGTATGCCGATGACTGTCTTGTTAACC
GAATTTCACAGcaCAAATGTTACATCGTGGCGACgtgtgatcgtgatttg
aaaagGAGGATACGAAAAGTTCCTGGAATCCCTATCATGTATTTGTCCAA
ACATAAatataGCATTGAACGAATGCCGGACGCTTTCGGAGctccaaaaa
attaaATGGGTAAAgcaaagaaatcaagaaagttTGCAGCCGTCAAACGG
ATGATCAACCCAAAAGATCAACGAATaaaagcaaatcaagaaaagaaaga
agcaGAACTTAAAAAGAAGGAAGAAAACAAAGTTCGCCGAGTggAGCAAT
CATCTTCAGCATTGTTTTTCCAATACAACACACAACTAGGCCCTCCGTAC
AGAGTGCTGGTGGACAccaatttcatcaatttttcaattcaacaCAAATT
AGATATCTTTCAATCCATGGTAGATTGTCTTTACGCAAAATGTATCCCCT
ACATCACAGATTGTGTGATGGCTGAAATCGAAAAACTGGGATCACATTAT
CGTGTTGCTCTAAGAGTGGCAAAAGATCCTCGTTTTGAACGTTTACCGTG
TATGCACAAAGGGACGTATGCCGATGACTGTCTTGTTAACCGAATTTCAC
AGcaCAAATGTTACATCGTGGCGACgtgtgatcgtgatttgaaaagGAGG
ATACGAAAAGTTCCTGGAATCCCTATCATGTATTTGTCCAAACATAAata
taGCATTGAACGAATGCCGGACGCTTTCGGAGctccaaaaaattaaATGG
GTAAAgcaaagaaatcaagaaagttTGCAGCCGTCAAACGGATGATCAAC
CCAAAAGATCAACGAATaaaagcaaatcaagaaaagaaagaagcaGAACT
TAAAAAGAAGGAAGAAAACAAAGTTCGCCGAGTggAGCAATCATCTTCAG
CATTGTTTTTCCAATACAACACACAACTAGGCCCTCCGTACAGAGTGCTG
GTGGACAccaatttcatcaatttttcaattcaacaCAAATTAGATATCTT
TCAATCCATGGTAGATTGTCTTTACGCAAAATGTATCCCCTACATCACAG
ATTGTGTGATGGCTGAAATCGAAAAACTGGGATCACATTATCGTGTTGCT
CTAAGAGTGGCAAAAGATCCTCGTTTTGAACGTTTACCGTGTATGCACAA
AGGGACGTATGCCGATGACTGTCTTGTTAACCGAATTTCACAGcaCAAAT
GTTACATCGTGGCGACgtgtgatcgtgatttgaaaagGAGGATACGAAAA
GTTCCTGGAATCCCTATCATGTATTTGTCCAAACATAAatataGCATTGA
ACGAATGCCGGACGCTTTCGGAGctccaaaaaattaaATGGGTAAAgcaa
agaaatcaagaaagttTGCAGCCGTCAAACGGATGATCAACCCAAAAGAT
CAACGAATaaaagcaaatcaagaaaagaaagaagcaGAACTTAAAAAGAA
GGAAGAAAACAAAGTTCGCCGAGTggAGCAATCATCTTCAGCATTGTTTT
TCCAATACAACACACAACTAGGCCCTCCGTACAGAGTGCTGGTGGACAcc
aatttcatcaatttttcaattcaacaCAAATTAGATATCTTTCAATCCAT
GGTAGATTGTCTTTACGCAAAATGTATCCCCTACATCACAGATTGTGTGA
TGGCTGAAATCGAAAAACTGGGATCACATTATCGTGTTGCTCTAAGAGTG
GCAAAAGATCCTCGTTTTGAACGTTTACCGTGTATGCACAAAGGGACGTA
TGCCGATGACTGTCTTGTTAACCGAATTTCACAGcaCAAATGTTACATCG
TGGCGACgtgtgatcgtgatttgaaaagGAGGATACGAAAAGTTCCTGGA
ATCCCTATCATGTATTTGTCCAAACATAAatataGCATTGAACGAATGCC
GGACGCTTTCGGAGctccaaaaaattaaATGGGTAAAgcaaagaaatcaa
gaaagttTGCAGCCGTCAAACGGATGATCAACCCAAAAGATCAACGAATa
aaagcaaatcaagaaaagaaagaagcaGAACTTAAAAAGAAGGAAGAAAA
CAAAGTTCGCCGAGTggAGCAATCATCTTCAGCATTGTTTTTCCAATACA
ACACACAACTAGGCCCTCCGTACAGAGTGCTGGTGGACAccaatttcatc
aatttttcaattcaacaCAAATTAGATATCTTTCAATCCATGGTAGATTG
TCTTTACGCAAAATGTATCCCCTACATCACAGATTGTGTGATGGCTGAAA
TCGAAAAACTGGGATCACATTATCGTGTTGCTCTAAGAGTGGCAAAAGAT
CCTCGTTTTGAACGTTTACCGTGTATGCACAAAGGGACGTATGCCGATGA
CTGTCTTGTTAACCGAATTTCACAGcaCAAATGTTACATCGTGGCGACgt
gtgatcgtgatttgaaaagGAGGATACGAAAAGTTCCTGGAATCCCTATC
ATGTATTTGTCCAAACATAAatataGCATTGAACGAATGCCGGACGCTTT
CGGAGctccaaaaaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009727XLOC_009727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017375-exon-sc0000266-1491911889:351869..352836TCONS_00017375-exon-sc0000266-1491911889:351869..352836Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1510915933:351869..352836TCONS_00017375-exon-sc0000266-1510915933:351869..352836Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1575043694:351869..352836TCONS_00017375-exon-sc0000266-1575043694:351869..352836Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1491911889:353123..353190TCONS_00017375-exon-sc0000266-1491911889:353123..353190Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1510915933:353123..353190TCONS_00017375-exon-sc0000266-1510915933:353123..353190Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1575043694:353123..353190TCONS_00017375-exon-sc0000266-1575043694:353123..353190Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1491911889:353614..353679TCONS_00017375-exon-sc0000266-1491911889:353614..353679Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1510915933:353614..353679TCONS_00017375-exon-sc0000266-1510915933:353614..353679Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1575043694:353614..353679TCONS_00017375-exon-sc0000266-1575043694:353614..353679Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1491911889:353977..354125TCONS_00017375-exon-sc0000266-1491911889:353977..354125Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1510915933:353977..354125TCONS_00017375-exon-sc0000266-1510915933:353977..354125Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1575043694:353977..354125TCONS_00017375-exon-sc0000266-1575043694:353977..354125Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1491911889:354694..354766TCONS_00017375-exon-sc0000266-1491911889:354694..354766Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1510915933:354694..354766TCONS_00017375-exon-sc0000266-1510915933:354694..354766Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1575043694:354694..354766TCONS_00017375-exon-sc0000266-1575043694:354694..354766Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1491911889:354927..355014TCONS_00017375-exon-sc0000266-1491911889:354927..355014Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1510915933:354927..355014TCONS_00017375-exon-sc0000266-1510915933:354927..355014Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1575043694:354927..355014TCONS_00017375-exon-sc0000266-1575043694:354927..355014Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1491911889:355274..355368TCONS_00017375-exon-sc0000266-1491911889:355274..355368Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1510915933:355274..355368TCONS_00017375-exon-sc0000266-1510915933:355274..355368Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1575043694:355274..355368TCONS_00017375-exon-sc0000266-1575043694:355274..355368Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1491911889:355570..355604TCONS_00017375-exon-sc0000266-1491911889:355570..355604Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1510915933:355570..355604TCONS_00017375-exon-sc0000266-1510915933:355570..355604Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1575043694:355570..355604TCONS_00017375-exon-sc0000266-1575043694:355570..355604Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1491911889:356541..356641TCONS_00017375-exon-sc0000266-1491911889:356541..356641Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1510915933:356541..356641TCONS_00017375-exon-sc0000266-1510915933:356541..356641Clytia hemisphaericaexon
TCONS_00017375-exon-sc0000266-1575043694:356541..356641TCONS_00017375-exon-sc0000266-1575043694:356541..356641Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017375-proteinTCONS_00017375-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:351869..356641 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
103.108	102.876	128.002	140.671	110.921	87.1991	57.962	64.3328	45.294	49.7138	42.3941	44.4276	42.1189	44.7357	45.2544	55.3023	45.4229	46.8068	43.421	39.7728	35.4614	32.0381	64.4957	52.0008	44.4692	51.7837	41.1293	37.9134	47.0206	44.4527
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002716PIN_dom
IPR029060PIN_domain-like
IPR006984Fcf1/Utp23
Vocabulary: Cellular Component
TermDefinition
GO:0032040small-subunit processome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0032040 small-subunit processome
Blast
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BLAST of TCONS_00017375 vs. Swiss-Prot (Human)
Match: FCF1 (rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 6.296e-91
Identity = 141/197 (71.57%), Postives = 164/197 (83.25%), Query Frame = 3 
Query:  966 MGKAKKSRKFAAVKRMINPKDQRIXXXXXXXXXXXXXX--XXXXXXXXXQSSSALFFQYNTQLGPPYRVLVDTNFINFSIQHKLDIFQSMVDCLYAKCIPYITDCVMAEIEKLGSHYRVALRVAKDPRFERLPCMHKGTYADDCLVNRISQHKCYIVATCDRDLKRRIRKVPGIPIMYLSKHKYSIERMPDAFGAPK 1550
            MGK KK+RK+A +KRM++ +DQR+K     K  + +KK     K R V Q  S LFFQYNTQLGPPY +LVDTNFINFSI+ KLD+ QSM+DCLYAKCIP ITDCVMAEIEKLG  YRVALR+AKDPRFERLPC HKGTYADDCLV R++QHKCYIVAT DRDLKRRIRK+PG+PIMY+S H+Y+IERMPD +GAP+
Sbjct:    1 MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPR 197
The following BLAST results are available for this feature:
BLAST of TCONS_00017375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCF16.296e-9171.57rRNA-processing protein FCF1 homolog OS=Homo sapie... [more]
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