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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017221 ID=TCONS_00017221|Name=TCONS_00017221|organism=Clytia hemisphaerica|type=transcript|length=2283bp
gAAAACTTCAGAATATTATTATACAACAACAGATACATTTGCTGTGTCAT
CGCTGATGATGTGAAAGTATTTAAATGGCTCACAAACAAATAAAAGTATG
TTCCAGAACGAAAGTGAATATCGATCACGTAAATATAAAGAGTGATCGAT
CGTTCAGAGAGAATAAGGTTGTAGAAAACGAAGCTTTGTTGTTTAAACTA
ATTGTACTTTAACCGACAAAAGCTCACAATCAAGGACTCAAGTGGTTGAT
AGACGCTTTGTCTAAACAAAGCTGACAGTAACAGTGACAACTTGAGTGAA
CGAGTTGCTACCAGCCTGGTTCATGGTTTATAACCAGCAGGCCTTACTTT
GGAGAGTTTGTGTGTGTGTCAAAAGACTTTCTGAACAGACCAAGACTGAA
TATTGATTGTGATTTCATAAGAATTTGTGGAGAAGTGGCTGGAAAGAAGG
AGAAGAATTGGTTGTAAAGTTAGTGATGCAGTTTATCAAAGAGTTATTGT
GTATCCCATCCAAGAAAGCATTCACTCTTTATAACGTTAATGTTCAAATC
GAATATGGGTAAGCTACTACTGGTCTCTGATACTATCTTTCGTTCTCACA
GACCTACTGcggaaaaattggcaaaaaaatcGTCCGCAGTGGAAAATTAA
CCTCCaacttttgtccccactgaaaacaatcaaataaaccCATTCTCGCC
gtaaaatatttactatttttcccatccccactgaattttccgactggaaa
ataaaagaattaaaatcgacagccataaaaaatatgaaaatattaatcca
catcgagtttcagtccgttatttttatctccaCCGGTCGAGAAAACTCAA
TCGACTTGGGtacttaagggaacttatttcggcgggaactaattttggcg
aattcggcgaatttagacaaagtattagttcccgccaaaatttagaaaat
tcatcaatagccaaaataatttttcgctaaaatttaaaatttttaggatt
ttttccgcccgtcaaaattagttcccaccaaaataagttcccttaaggta
atagaTATTGGGTCCTTACACGCAAACGATCAAACTAACACTAAGTTCTT
TACTTCTAATTAGAACCATATGAGGATACTTGGGTCGTTACATGGAATAC
GCCTCACAAATAAAGAAGAAGATTCCACAAACGACCGTCAAAGGGAAGAA
AGGAAGAACTAGTAAGTACTTTTCAATCTCCTACCTAGACGAAACTATCG
TCTACACATTatcactaaaaagggaataattcaggaggcgggcgataaat
ttgaaaatggaggTCAGTTCGGGCAGAGTAAACAGTGacggaggtgttta
cagtgttttGTTCCAAAGCTCTACCGCCAAtattttcccgtaaaccgcca
cGACTCTGCGCATATGtactttcccgcgtttactgaccctctaaacggac
gatagcatcgccTATCTCGTACCCAGAACTTTGGATTTACTTATGGAAGT
TGGTGAGCGCTTTCTCCTAGCCAAAGTACAATTTTtgcacaaaattttca
aaagtttataaaatcCGAGAATTATGTTCTTGTGAAACTTTCATTCATTC
GATATTGAAAAAAACTATTCTTTCAAAACATCGAGAAATATTCTTTctct
aaaatgaaaattagagAGTGACTTATTGTCTTAACGATGAATAAGCAGAT
ATAGCCCTCCTCAATCGTTAATTACTCTATGTGAATTTGGATCAACATGT
TTACCAGTTAAAATGCTATGTCATTTTCGTGATGGAGCTATCTCAATTTA
TCATTTATCTTATCATTTATAACAAAGCTAATTTGATGAGAGTTATATCT
CGTAAATTCGCTTGAAGAGTAAATCTTAGATTTGAAAATTCTAATGAATG
TATCACAGTTTATCATCAGTCAGAAGATCCTGTCCCAAACTATACATTCT
GTTCCTAACAAAAAACATATTTAAACCATGATATTTTCTCGTCATCAAAA
AATCTAATTGGGTTCGGATATTGAtaattagataaaaaattatgaTGTTT
TTCACTTTGGCCGAAAATTTCAATTGTACAAGTTTTATTTCCTTCTTACT
TCAATCAAAGACATCTTTGTTTAACTATTTAACcttactacacgtttttt
tcgtaaggaacacgtttataagcaacttgaggctgaaaatggtcccaAAA
AATACGGAATttttaaggaactgctcaggctgagaataagaaaacaagtt
aaggAAACAGTAAGGGTAAAACTTAAACTTGTA Run BLAST on NCBI transcript from alignment at sc0000261:132565..134847+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017221 ID=TCONS_00017221|Name=TCONS_00017221|organism=Clytia hemisphaerica|type=transcript|length=2283bp|location=Sequence derived from alignment at sc0000261:132565..134847+ (Clytia hemisphaerica)
gAAAACTTCAGAATATTATTATACAACAACAGATACATTTGCTGTGTCAT
CGCTGATGATGTGAAAGTATTTAAATGGCTCACAAACAAATAAAAGTATG
TTCCAGAACGAAAGTGAATATCGATCACGTAAATATAAAGAGTGATCGAT
CGTTCAGAGAGAATAAGGTTGTAGAAAACGAAGCTTTGTTGTTTAAACTA
ATTGTACTTTAACCGACAAAAGCTCACAATCAAGGACTCAAGTGGTTGAT
AGACGCTTTGTCTAAACAAAGCTGACAGTAACAGTGACAACTTGAGTGAA
CGAGTTGCTACCAGCCTGGTTCATGGTTTATAACCAGCAGGCCTTACTTT
GGAGAGTTTGTGTGTGTGTCAAAAGACTTTCTGAACAGACCAAGACTGAA
TATTGATTGTGATTTCATAAGAATTTGTGGAGAAGTGGCTGGAAAGAAGG
AGAAGAATTGGTTGTAAAGTTAGTGATGCAGTTTATCAAAGAGTTATTGT
GTATCCCATCCAAGAAAGCATTCACTCTTTATAACGTTAATGTTCAAATC
GAATATGGGTAAGCTACTACTGGTCTCTGATACTATCTTTCGTTCTCACA
GACCTACTGcggaaaaattggcaaaaaaatcGTCCGCAGTGGAAAATTAA
CCTCCaacttttgtccccactgaaaacaatcaaataaaccCATTCTCGCC
gtaaaatatttactatttttcccatccccactgaattttccgactggaaa
ataaaagaattaaaatcgacagccataaaaaatatgaaaatattaatcca
catcgagtttcagtccgttatttttatctccaCCGGTCGAGAAAACTCAA
TCGACTTGGGtacttaagggaacttatttcggcgggaactaattttggcg
aattcggcgaatttagacaaagtattagttcccgccaaaatttagaaaat
tcatcaatagccaaaataatttttcgctaaaatttaaaatttttaggatt
ttttccgcccgtcaaaattagttcccaccaaaataagttcccttaaggta
atagaTATTGGGTCCTTACACGCAAACGATCAAACTAACACTAAGTTCTT
TACTTCTAATTAGAACCATATGAGGATACTTGGGTCGTTACATGGAATAC
GCCTCACAAATAAAGAAGAAGATTCCACAAACGACCGTCAAAGGGAAGAA
AGGAAGAACTAGTAAGTACTTTTCAATCTCCTACCTAGACGAAACTATCG
TCTACACATTatcactaaaaagggaataattcaggaggcgggcgataaat
ttgaaaatggaggTCAGTTCGGGCAGAGTAAACAGTGacggaggtgttta
cagtgttttGTTCCAAAGCTCTACCGCCAAtattttcccgtaaaccgcca
cGACTCTGCGCATATGtactttcccgcgtttactgaccctctaaacggac
gatagcatcgccTATCTCGTACCCAGAACTTTGGATTTACTTATGGAAGT
TGGTGAGCGCTTTCTCCTAGCCAAAGTACAATTTTtgcacaaaattttca
aaagtttataaaatcCGAGAATTATGTTCTTGTGAAACTTTCATTCATTC
GATATTGAAAAAAACTATTCTTTCAAAACATCGAGAAATATTCTTTctct
aaaatgaaaattagagAGTGACTTATTGTCTTAACGATGAATAAGCAGAT
ATAGCCCTCCTCAATCGTTAATTACTCTATGTGAATTTGGATCAACATGT
TTACCAGTTAAAATGCTATGTCATTTTCGTGATGGAGCTATCTCAATTTA
TCATTTATCTTATCATTTATAACAAAGCTAATTTGATGAGAGTTATATCT
CGTAAATTCGCTTGAAGAGTAAATCTTAGATTTGAAAATTCTAATGAATG
TATCACAGTTTATCATCAGTCAGAAGATCCTGTCCCAAACTATACATTCT
GTTCCTAACAAAAAACATATTTAAACCATGATATTTTCTCGTCATCAAAA
AATCTAATTGGGTTCGGATATTGAtaattagataaaaaattatgaTGTTT
TTCACTTTGGCCGAAAATTTCAATTGTACAAGTTTTATTTCCTTCTTACT
TCAATCAAAGACATCTTTGTTTAACTATTTAACcttactacacgtttttt
tcgtaaggaacacgtttataagcaacttgaggctgaaaatggtcccaAAA
AATACGGAATttttaaggaactgctcaggctgagaataagaaaacaagtt
aaggAAACAGTAAGGGTAAAACTTAAACTTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017221-exon-sc0000261-1491911889:132565..134847 | TCONS_00017221-exon-sc0000261-1491911889:132565..134847 | Clytia hemisphaerica | exon |
| TCONS_00017221-exon-sc0000261-1510915933:132565..134847 | TCONS_00017221-exon-sc0000261-1510915933:132565..134847 | Clytia hemisphaerica | exon |
| TCONS_00017221-exon-sc0000261-1575043694:132565..134847 | TCONS_00017221-exon-sc0000261-1575043694:132565..134847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000261 | supercontig | sc0000261:132565..134847 + |
Blast
The following BLAST results are available for this feature:
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