TCONS_00017212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017212
Unique NameTCONS_00017212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017212 ID=TCONS_00017212|Name=TCONS_00017212|organism=Clytia hemisphaerica|type=transcript|length=265bp
AAGTTGCTTGAATGGATCAGATACTTCCTGAAGGATCGATTTCAGATAGT
TAAAGTAAATGGAGCTGAATCCGAAAAACAATTAGTTCTTAGTGGAGTTC
CCCAAGGTAGTGTCCTAGGGCCTACCCTTTTTGTTCTATACATCAACGAT
TTACCAGACTCAATTAAATCACAACTCTTTctatttgctgacgacactaA
ACTTGTCAATAAAGTAGAATCAATTGAAGATGCACTTATAATCCAGGAGG
ACATCGATCGACTAC
Run BLAST on NCBI

transcript from alignment at sc0000260:358822..359086

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017212 ID=TCONS_00017212|Name=TCONS_00017212|organism=Clytia hemisphaerica|type=transcript|length=265bp|location=Sequence derived from alignment at sc0000260:358822..359086 (Clytia hemisphaerica)
GTAGTCGATCGATGTCCTCCTGGATTATAAGTGCATCTTCAATTGATTCT
ACTTTATTGACAAGTTtagtgtcgtcagcaaatagAAAGAGTTGTGATTT
AATTGAGTCTGGTAAATCGTTGATGTATAGAACAAAAAGGGTAGGCCCTA
GGACACTACCTTGGGGAACTCCACTAAGAACTAATTGTTTTTCGGATTCA
GCTCCATTTACTTTAACTATCTGAAATCGATCCTTCAGGAAGTATCTGAT
CCATTCAAGCAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009632XLOC_009632Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017212-exon-sc0000260-1491911889:358822..359086TCONS_00017212-exon-sc0000260-1491911889:358822..359086Clytia hemisphaericaexon
TCONS_00017212-exon-sc0000260-1510915933:358822..359086TCONS_00017212-exon-sc0000260-1510915933:358822..359086Clytia hemisphaericaexon
TCONS_00017212-exon-sc0000260-1575043694:358822..359086TCONS_00017212-exon-sc0000260-1575043694:358822..359086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:358822..359086 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.65539	4.75278	5.51843	4.72406	4.9295	3.89536	4.69959	3.66641	1.02678	5.08732	0	5.27469	4.86218	4.20785	5.18913	3.71249	5.48818	7.50028	3.23814	5.42156	2.9452	6.03358	0	4.44548	7.84927	9.34038	128.648	136.405	29.0766	15.1567
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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