TCONS_00016999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016999
Unique NameTCONS_00016999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016999 ID=TCONS_00016999|Name=TCONS_00016999|organism=Clytia hemisphaerica|type=transcript|length=704bp
ctttgaaaaatcgaGTCTGAATggctttttaaatcctttgaCAAGTAGTT
TAGATTCGGGAAAAGAGGAGTCCAGCTTTGTTTCTGCGATGCAAAAGATA
TCTATGTGAGGCAAAATTAGATTCTTTACATCCTTTTGTTTGTTAGGCAA
AGAATTAATATTAAGGTAGGAAAACAAAATATCATTTTCCTTTTCCAAGT
TTTCAAGAGGGTTTTCAGAAATAATCTTACCACCGAGGTGTGATCCGTTA
AATTCATGCGATTCCCGTCAACAATTTATTAAGTTGCGTAGATTACTTTC
AAGTTTGTTTGTTCCATCTATGTTCAAGTGTAAACGACTTTTGTTAAGGT
GTTTCTCAGGATCATTATTACCATTATTAATGTAACCNAACGACTTTTGT
TAAGGTGTTTCTCAAGATCAATATTACCATTATTAATGTAACAAATATTA
CATTCGTTGCAAAGCTTTTCCAGTATTTCATTCACCTTTAAAACCTTTCC
GTTCAATTCATCACCTCTCCGTATAACACCAGAAACGACAACACCAGTGT
TTTCACTTTGCTCACTAACCGTTCTCGCCaaatcaacaatattttttgat
atttcgtTCGGCTCTTTAGTTCTCAAGTCATTTGTGCCACAATGCAATAT
TACTAAATCTGGTTTTTGTTCAAGTGTTGGAACAACGTAGTGCTTCATAC
AATC
Run BLAST on NCBI

protein sequence of TCONS_00016999-protein

>TCONS_00016999-protein ID=TCONS_00016999-protein|Name=TCONS_00016999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
DCMKHYVVPTLEQKPDLVILHCGTNDLRTKEPNEISKNIVDLARTVSEQS
ENTGVVVSGVIRRGDELNGKVLKVNEILEKLCNECNICYINNGNIDLEKH
LNKSRXVTLIMVIMILRNTLTKVVYT
Run BLAST on NCBI

transcript from alignment at sc0000255:300688..301391

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016999 ID=TCONS_00016999|Name=TCONS_00016999|organism=Clytia hemisphaerica|type=transcript|length=704bp|location=Sequence derived from alignment at sc0000255:300688..301391 (Clytia hemisphaerica)
GATTGTATGAAGCACTACGTTGTTCCAACACTTGAACAAAAACCAGATTT
AGTAATATTGCATTGTGGCACAAATGACTTGAGAACTAAAGAGCCGAacg
aaatatcaaaaaatattgttgatttGGCGAGAACGGTTAGTGAGCAAAGT
GAAAACACTGGTGTTGTCGTTTCTGGTGTTATACGGAGAGGTGATGAATT
GAACGGAAAGGTTTTAAAGGTGAATGAAATACTGGAAAAGCTTTGCAACG
AATGTAATATTTGTTACATTAATAATGGTAATATTGATCTTGAGAAACAC
CTTAACAAAAGTCGTTNGGTTACATTAATAATGGTAATAATGATCCTGAG
AAACACCTTAACAAAAGTCGTTTACACTTGAACATAGATGGAACAAACAA
ACTTGAAAGTAATCTACGCAACTTAATAAATTGTTGACGGGAATCGCATG
AATTTAACGGATCACACCTCGGTGGTAAGATTATTTCTGAAAACCCTCTT
GAAAACTTGGAAAAGGAAAATGATATTTTGTTTTCCTACCTTAATATTAA
TTCTTTGCCTAACAAACAAAAGGATGTAAAGAATCTAATTTTGCCTCACA
TAGATATCTTTTGCATCGCAGAAACAAAGCTGGACTCCTCTTTTCCCGAA
TCTAAACTACTTGtcaaaggatttaaaaagccATTCAGACtcgatttttc
aaag

Coding sequence (CDS) from alignment at sc0000255:300688..301391

>TCONS_00016999 ID=TCONS_00016999|Name=TCONS_00016999|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000255:300688..301391 (Clytia hemisphaerica)
GATTGTATGAAGCACTACGTTGTTCCAACACTTGAACAAAAACCAGATTT
AGTAATATTGCATTGTGGCACAAATGACTTGAGAACTAAAGAGCCGAacg
aaatatcaaaaaatattgttgatttGGCGAGAACGGTTAGTGAGCAAAGT
GAAAACACTGGTGTTGTCGTTTCTGGTGTTATACGGAGAGGTGATGAATT
GAACGGAAAGGTTTTAAAGGTGAATGAAATACTGGAAAAGCTTTGCAACG
AATGTAATATTTGTTACATTAATAATGGTAATATTGATCTTGAGAAACAC
CTTAACAAAAGTCGTTNGGTTACATTAATAATGGTAATAATGATCCTGAG
AAACACCTTAACAAAAGTCGTTTACACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009521XLOC_009521Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016999-exon-sc0000255-1491911889:300688..301391TCONS_00016999-exon-sc0000255-1491911889:300688..301391Clytia hemisphaericaexon
TCONS_00016999-exon-sc0000255-1510915933:300688..301391TCONS_00016999-exon-sc0000255-1510915933:300688..301391Clytia hemisphaericaexon
TCONS_00016999-exon-sc0000255-1575043694:300688..301391TCONS_00016999-exon-sc0000255-1575043694:300688..301391Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016999-proteinTCONS_00016999-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:300688..301391 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.430033	0.539609	0.529616	0.714542	0.48327	0.152755	0.0921459	0.172532	0.301984	0.748112	0.145227	0.2864	3.71758	1.655	2.81955	0.78615	0.719145	3.88174	0	0	0	0	0.0821779	0.0747117	0	0.343386	0	0	0	0.162099
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001087GDSL
IPR013830SGNH_hydro
Vocabulary: Molecular Function
TermDefinition
GO:0016788hydrolase activity, acting on ester bonds
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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