TCONS_00016780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016780
Unique NameTCONS_00016780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016780 ID=TCONS_00016780|Name=TCONS_00016780|organism=Clytia hemisphaerica|type=transcript|length=605bp
ATCGAATTTATAGCTCCCAAGGCTAAAAAAAGGctagttttttttcattt
tcattaaaaaatgactGATCTGCTTTCCTCTTTTGCAAGGTATCATTGCG
GTAGGATCAGATGCCGATATCATTGTATGGGATCCTGAAGCGTCACGAAC
AATCTCCGCTAAAACGCATCACCAGGCAGTAGATTTCAACATTTTCGAAG
GACAAGTATGTCACGGGGTAACTGACGTCACTATCTCACGTGGTAAAGTC
GTATATGACCGAGCTAACGGCGGTttgaAAGTTGTACGAGGGTCAGGCAG
ATTCATTCCACGCCAATGCTTCTCACAATATGTTTATGAACGACAATTCT
TGAAAGAAAAGGTACAGTAGGAACTGTTATTCTTGGCATCTAAGTTTTTT
TTCGTCTCGACGCTTCAAGACCAGAAtcttaaaatcaattttttgcggaa
cgaccgttttgagggcgcgaagcgcccgaatagggagtgtagcatccttt
ctctagatctgcgcgtggcgtaaaaaaatctgtatatgtacgaaaatttc
tgaaaatgagccGGTGGGATGGTgaaatatcgactttgcttcgtgttgga
tgggg
Run BLAST on NCBI

transcript from alignment at sc0000252:42524..43466+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016780 ID=TCONS_00016780|Name=TCONS_00016780|organism=Clytia hemisphaerica|type=transcript|length=943bp|location=Sequence derived from alignment at sc0000252:42524..43466+ (Clytia hemisphaerica)
ATCGAATTTATAGCTCCCAAGGCTAAAAAAAGGctagttttttttcattt
tcattaaaaaatgactGATCTGCTTTCCTCTTTTGCAAGGTATCATTGCG
GTAGGATCAGATGCCGATATCATTGTATGGGATCCTGAAGCGTCACGAAC
AATCTCCGCTAAAACGCATCACCAGGTATTGCTTTGAAGTGTTTTGTATT
TAAAGTGGAGTCTATTTtgaactcgaacctctataactcaaatgtctcct
ttaACTCGAGCAACTCTTAAAATTCAATGGCAGTTAAATAGGCCCCTCAT
TAAGTTCATAAAGATATAACAAGTTTTTAAAACACGTACCATTGTTGCAC
ATcttattttttgccttttttcgcATTAAGGCAGTAGATTTCAACATTTT
CGAAGGACAAGTATGTCACGGGGTAACTGACGTCACTATCTCACGTGGTA
AAGTCGTATATGACCGAGCTAACGGCGGTGTaagtatattttcattttac
ggTAATCATTCATTCGAAAAATAATGCCTTCAAATTTAGTAAATCATGTA
CCTTAAAATTGAATCACTCTCCCCAGCCCCATTTTAtgttttgctctttt
tttttcttttagttgaAAGTTGTACGAGGGTCAGGCAGATTCATTCCACG
CCAATGCTTCTCACAATATGTTTATGAACGACAATTCTTGAAAGAAAAGG
TACAGTAGGAACTGTTATTCTTGGCATCTAAGTTTTTTTTCGTCTCGACG
CTTCAAGACCAGAAtcttaaaatcaattttttgcggaacgaccgttttga
gggcgcgaagcgcccgaatagggagtgtagcatcctttctctagatctgc
gcgtggcgtaaaaaaatctgtatatgtacgaaaatttctgaaaatgagcc
GGTGGGATGGTgaaatatcgactttgcttcgtgttggatgggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009393XLOC_009393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016780-exon-sc0000252-1491911889:42524..42698TCONS_00016780-exon-sc0000252-1491911889:42524..42698Clytia hemisphaericaexon
TCONS_00016780-exon-sc0000252-1510915933:42524..42698TCONS_00016780-exon-sc0000252-1510915933:42524..42698Clytia hemisphaericaexon
TCONS_00016780-exon-sc0000252-1575043694:42524..42698TCONS_00016780-exon-sc0000252-1575043694:42524..42698Clytia hemisphaericaexon
TCONS_00016780-exon-sc0000252-1491911889:42904..43002TCONS_00016780-exon-sc0000252-1491911889:42904..43002Clytia hemisphaericaexon
TCONS_00016780-exon-sc0000252-1510915933:42904..43002TCONS_00016780-exon-sc0000252-1510915933:42904..43002Clytia hemisphaericaexon
TCONS_00016780-exon-sc0000252-1575043694:42904..43002TCONS_00016780-exon-sc0000252-1575043694:42904..43002Clytia hemisphaericaexon
TCONS_00016780-exon-sc0000252-1491911889:43136..43466TCONS_00016780-exon-sc0000252-1491911889:43136..43466Clytia hemisphaericaexon
TCONS_00016780-exon-sc0000252-1510915933:43136..43466TCONS_00016780-exon-sc0000252-1510915933:43136..43466Clytia hemisphaericaexon
TCONS_00016780-exon-sc0000252-1575043694:43136..43466TCONS_00016780-exon-sc0000252-1575043694:43136..43466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:42524..43466 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.2253	33.3161	25.7935	27.5451	8.8004	6.41553	13.3674	13.0846	16.4532	14.6283	20.3601	22.5655	33.0992	34.4978	29.3777	28.6466	27.1258	29.9638	26.1512	27.9239	20.897	19.3407	19.9053	21.0303	11.2651	12.8503	32.4854	35.14	15.8126	14.6794
Blast
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BLAST of TCONS_00016780 vs. Swiss-Prot (Human)
Match: DPYS (Dihydropyrimidinase OS=Homo sapiens GN=DPYS PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.026e-33
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 2 
Query:   86 QGIIAVGSDADIIVWDPEASRTISAKTHHQAVDFNIFEGQVCHGVTDVTISRGKVVYDRANGGLKVVRGSGRFIPRQCFSQYVYER 343
            +G IAVGSDADI++WDP+ +RTISAKTHHQAV+FNIFEG VCHGV  VTISRGKVVY+   G   V  G G+FIPR+ F++Y+Y+R
Sbjct:  392 KGRIAVGSDADIVIWDPKGTRTISAKTHHQAVNFNIFEGMVCHGVPLVTISRGKVVYEA--GVFSVTAGDGKFIPRKPFAEYIYKR 475
The following BLAST results are available for this feature:
BLAST of TCONS_00016780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPYS6.026e-3367.44Dihydropyrimidinase OS=Homo sapiens GN=DPYS PE=1 S... [more]
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