TCONS_00016724 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016724
Unique NameTCONS_00016724
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016724 ID=TCONS_00016724|Name=TCONS_00016724|organism=Clytia hemisphaerica|type=transcript|length=340bp
TGAAACAAatatcagcaaaaatttttgaaagatgtgGTGGCGCGCTACAT
CATTGATGACAGAAGACCTTAAGAAATCTTCGAAAGCAAGACTTCCAAAA
GGCTTTCATCGTGGTagaaatcaaattcaaagttttcaacCAGGTCGTGG
AAATACACCAGAAGATGACGAGTTGTGTCAGGTCAAAAAAACGTTAATCA
GTTACAAGGATGTTACTCTTCCTGACAAACTTTACGGTGGCCGAAACACA
AAACCATGCATTGTTTCTGATGATAAAGAATTCTTTCAAAGAAAGATTAT
GAAGGAGTTGAACGTTGGCCCACTGGAATTCGACATTGCG
Run BLAST on NCBI

protein sequence of TCONS_00016724-protein

>TCONS_00016724-protein ID=TCONS_00016724-protein|Name=TCONS_00016724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MWWRATSLMTEDLKKSSKARLPKGFHRGRNQIQSFQPGRGNTPEDDELCQ
VKKTLISYKDVTLPDKLYGGRNTKPCIVSDDKEFFQRKIMKELNVGPLEF
DIA
Run BLAST on NCBI

transcript from alignment at sc0000248:254256..255170+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016724 ID=TCONS_00016724|Name=TCONS_00016724|organism=Clytia hemisphaerica|type=transcript|length=915bp|location=Sequence derived from alignment at sc0000248:254256..255170+ (Clytia hemisphaerica)
TGAAACAAatatcagcaaaaatttttgaaagatgtgGTGGCGCGCTACAT
CATTGATGACAGAAGACCTTAAGAAATCTTCGAAAGCAAGACTTCCAAAA
GGCTTTCATCGTGGTagaaatcaaattcaaagttttcaacCAGGTCGTGG
AAATACACCAGAAGATGACGAGTTGTGTCAGGTCAAAAAAACGTTAATCA
GTTACAAGGATGTTACTCTTCCTGACAAACTTTACGGTGGCCGAAACACA
AAACCATGCATTGTTTCTGATGATAAAGAATTCTTTCAAAGAAAGGTTTG
TTTATAATAGTCCATGATTACAATTTCTAACCCGGAAATTTTGTTCTTTG
GGCCTAAAAATCATAGCCTATTACCCTCCCCACCGCACCGTCCAAAGGAT
TTATGATACGTTCAGCTTATTCCGTTTGTTTGATCGGCAGGTGCTACGCC
GGGTGATGGCTAGTTCTAGCTTTATACTTTAAATCTAATAGCTCTGGTTA
TATACCATATCTTCCACTCCTACTCAACAGTCACCAGCCTAAGTAAGGCA
ACCCCAGTTACCTTGGTTGCAGTAAGTTTGTCGTGACTTTTCGGCTTTAG
AAAGAGAGTCAATGGTTCTTCTTGTGAAGCTGCCGTCTTATTCCGAACCA
TGTTTGCTTTACAATATTACTTTTTATAAAGACTGATTATCAGCTTTGGT
GtgactttcaaagtttttcatgcaaagattgGTGTATTTTGTTACCCCTG
ACACAAGCAAGAAGGGCGTGGCCTCAGCTTAAATAAATTTCGATAGAGTT
CGATTCTTTTACGGGCTGCTGGTTCATATCCGCAAATTCAGACTTCAAAT
GTCTTTCACATTGGTTTTAGATTATGAAGGAGTTGAACGTTGGCCCACTG
GAATTCGACATTGCG

Coding sequence (CDS) from alignment at sc0000248:254256..255170+

>TCONS_00016724 ID=TCONS_00016724|Name=TCONS_00016724|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at sc0000248:254256..255170+ (Clytia hemisphaerica)
atgtgGTGGCGCGCTACATCATTGATGACAGAAGACCTTAAGAAATCTTC
GAAAGCAAGACTTCCAAAAGGCTTTCATCGTGGTagaaatcaaattcaaa
gttttcaacCAGGTCGTGGAAATACACCAGAAGATGACGAGTTGTGTCAG
GTCAAAAAAACGTTAATCAGTTACAAGGATGTTACTCTTCCTGACAAACT
TTACGGTGGCCGAAACACAAAACCATGCATTGTTTCTGATGATAAAGAAT
TCTTTCAAAGAAAGATTATGAAGGAGTTGAACGTTGGCCCACTGGAATTC
GACATTGCGatgtgGTGGCGCGCTACATCATTGATGACAGAAGACCTTAA
GAAATCTTCGAAAGCAAGACTTCCAAAAGGCTTTCATCGTGGTagaaatc
aaattcaaagttttcaacCAGGTCGTGGAAATACACCAGAAGATGACGAG
TTGTGTCAGGTCAAAAAAACGTTAATCAGTTACAAGGATGTTACTCTTCC
TGACAAACTTTACGGTGGCCGAAACACAAAACCATGCATTGTTTCTGATG
ATAAAGAATTCTTTCAAAGAAAGATTATGAAGGAGTTGAACGTTGGCCCA
CTGGAATTCGACATTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009351XLOC_009351Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016724-proteinTCONS_00016724-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016724-exon-sc0000248-1491911889:254256..254550TCONS_00016724-exon-sc0000248-1491911889:254256..254550Clytia hemisphaericaexon
TCONS_00016724-exon-sc0000248-1510915933:254256..254550TCONS_00016724-exon-sc0000248-1510915933:254256..254550Clytia hemisphaericaexon
TCONS_00016724-exon-sc0000248-1575043694:254256..254550TCONS_00016724-exon-sc0000248-1575043694:254256..254550Clytia hemisphaericaexon
TCONS_00016724-exon-sc0000248-1491911889:255126..255170TCONS_00016724-exon-sc0000248-1491911889:255126..255170Clytia hemisphaericaexon
TCONS_00016724-exon-sc0000248-1510915933:255126..255170TCONS_00016724-exon-sc0000248-1510915933:255126..255170Clytia hemisphaericaexon
TCONS_00016724-exon-sc0000248-1575043694:255126..255170TCONS_00016724-exon-sc0000248-1575043694:255126..255170Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:254256..255170 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.270821	0.132046	0.613274	0.749991	0	0	0.174091	0	0	0	0	0	0	0	0	0	0.101652	0	0	0	0	0	0	0.141153	0	0.259504	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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