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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016713 ID=TCONS_00016713|Name=TCONS_00016713|organism=Clytia hemisphaerica|type=transcript|length=1919bp
aggctgcgcgcatccccagaatttattttgttataggggatgcgtatcgt
gtatgaaattctcgtccgagagttacctcaaatttggggtaaccaaaatt
tgcataaatttacataatttcgtcacatccaatcaaagaaagaaaaaaat
gaagttgttgctgttgttttcataattatcaattttcattcattgaacaa
agaaaaaaagaagtcattgtattgcaatgacgcataatcaaaaaagaaaa
aaaaaaagacgggggtaagttgggacagaaatattttagacgatacgcat
cccctatatcaaatcatatcagaggggatgcgtgcagcctaattCTTTGC
TAAAGGAAAAGCTTTATGTCAAGAGAAGAGACCGATTGAACGGCAACAAG
TGAACGAATACNATAGATGACAACTAGAATCTTTTTTCAAGATGGCGGTT
TCGGAGgATGACATTATCAGACAACGTTTGCTGGTAGATGGTGACGGATC
TGGGGACGACAAAAAGATTATGACTGCACTTCGAACCATCATCAAATGGA
GCACAATGTCCTGTGATGATGAAGAAAGGAACACCCACTACCAGAAGATC
ATTATGCTGTTGAGACAATGTGAATACACAATGACCAAACATCACTTATC
ATATCTCATGAACATCCAGGAAAGACAGAACTACGAGACACTCTATCAAC
ACATTGGTGAACAGATTTCAGTTTGTAGGAAAGAAATTAAAGAGAGCAAA
GAAGAATTACAGAGAGCCAAAGTGGTCCGAAAGAACAAGCAAGAGTATGA
TTCACTTgcaaaaatcattgaaaaacaTCCTGAACGCAAGACAACAGAAT
TAGAAATCAACAATTTACAGAAGGATATCAGTGAATTAAACCTAAAGAAA
GAATCGTTGATGCAGAAGCTTGAGATGCGACAAAAACAATTTCACGTCTT
GTTATACTCAGTACAATTACTGCAGCAAATTTTagaagAGGACAACGATG
TTATTGATTTATCGACTGATGACGTAATCAAAACAGAAACTAAAAGTTCC
ACCAAATCAAAAAGTGTGGAAGTGATGGACATTTCAAAATAGTTTGATAC
CcaaaaaaagaatcaacaaaTTAATAATACATTTGCTTCTCTCCATGGAA
AGAGGAAGTATGAATAAtctatatttcaaaattttattggttttcacttt
tgaaaattgaagtgAAAAGGTGCAAAAATGGTAGTTTTCCCGCTCAAAAG
ACTTGAAAAAATAAGTATTGATACAGTAAAAATTATTTGAGATTGAATAA
TCTTCTCCAGACGCTATTATTTTAATACGCCATCGAAAGTACCACCATAT
TTTAAGATGTGCTGAAAGACGTGTATTACTAAACATTGTATATAAATGAA
AGGAGAACATGGTTGTCATCGATAGCTGTTCTTTCAAGATACATATAGAG
ACGGTTAAATAAAGTAGTTGGTTTGATACGagataaagaaatcaaaaagt
agACAAATCTGCAATGGtttacataattttaaaaagatggaaaatagttg
tttttaaaaagttttttaacgaaaaaaatcaaagatgtaATTTTGGAACA
CacacaaatttgtttattgGTTTATTGGGTTATAACTTTTGAATCCTACA
GTCTACGGTGTACATGTATCACCATGAAAACTTGGAATCGTTTAACAAAG
ATCAATTTTGTTGATTATGCGGAAAAGGCAATTACGTCGAGCAGTAAGAT
TTTTAAATTCCTCTTTTAATTATCTTTTAAAACCATTTTTTTTGTCTAAA
TTGCAGATAcatgctttttcttttataagaatacactttataagagaATT
CATGATGGAATTGaccgaaaagttaagaatattctaagaatatcaccatc
atggagtTTGGCAGCAGAA Run BLAST on NCBI protein sequence of TCONS_00016713-protein >TCONS_00016713-protein ID=TCONS_00016713-protein|Name=TCONS_00016713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MAVSEDDIIRQRLLVDGDGSGDDKKIMTALRTIIKWSTMSCDDEERNTHY
QKIIMLLRQCEYTMTKHHLSYLMNIQERQNYETLYQHIGEQISVCRKEIK
ESKEELQRAKVVRKNKQEYDSLAKIIEKHPERKTTELEINNLQKDISELN
LKKESLMQKLEMRQKQFHVLLYSVQLLQQILEEDNDVIDLSTDDVIKTET
KSSTKSKSVEVMDISK Run BLAST on NCBI transcript from alignment at sc0000248:100801..114083+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016713 ID=TCONS_00016713|Name=TCONS_00016713|organism=Clytia hemisphaerica|type=transcript|length=13283bp|location=Sequence derived from alignment at sc0000248:100801..114083+ (Clytia hemisphaerica)
aggctgcgcgcatccccagaatttattttgttataggggatgcgtatcgt
gtatgaaattctcgtccgagagttacctcaaatttggggtaaccaaaatt
tgcataaatttacataatttcgtcacatccaatcaaagaaagaaaaaaat
gaagttgttgctgttgttttcataattatcaattttcattcattgaacaa
agaaaaaaagaagtcattgtattgcaatgacgcataatcaaaaaagaaaa
aaaaaaagacgggggtaagttgggacagaaatattttagacgatacgcat
cccctatatcaaatcatatcagaggggatgcgtgcagcctaattCTTTGC
TAAAGGAAAAGCTTTATGTCAAGAGAAGAGACCGATTGAACGGCAACAAG
TGAACGAATACNATAGATGACAACTAGAATCTTTTTTCAAGATGGCGGTT
TCGGAGggtaagttttcatttttacattATTTCTTCACTATTTTTATCCT
GATTTCAATTCATACCACATTGAATACCAAGTGAATGCTTTCACTTCCTT
ATGAACTGATGACTTAGCACTGCCAGGAAAATCAGACAGTCAGATTGGTA
AGAGAACTTTCAGATTGTTCTagtcagatttttcaaaattcttatttgtt
ttCCACTTATTATATACTCCCTTtaggtaacctgagatcagattgtgatt
gttttctgcccataACGCTTAAgctctatttctatttctatccttattta
cataaacctaaaaaagctaacatcgTGAATATAACAAAAACTTGTCATAC
CATGGTGGAATTAGTGAACAGCACGCCAAATATATTCGGCGTGAGGCAGT
AATTACTTTTGGCGTATTGGCGTAAGGAGTGGATTTAAAGTAAGATATTG
GCGTaagtcaaagcttttcaagacGAGAGTAGCACCGCCATCATTTTAAC
GCCTGATTTCATCACGCCAGGTTTAAACGCATCCACCTCGCCACAGGTGT
TTGCCATAAGCAAAAGTTGGTAATGCAAAGTCTCACAAAATCGCATTTAg
caaacgcaaaaaaaaacaactccataatggcggcatcATGCGAGAGCAAT
CAGAataccaaaataaacaaatttcaaaggcTCATTTTAAGTGATTGAGT
GGAAGctatcatcaaaaaataaaaataaaacaaacctttaacCTTTCAAT
AATCCAAACAGTTTAGACCTAacttttcatacaaaaattacgggaaacgc
atgtttggactttgtaccctatgctgcactcaagcacttgggccaaaatc
ccgcaaaggcaGGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNagagcagtaaaaaatacaacttttctatttttcctt
ttttttgcaaaagttctagtaatgaaaataaagggataatgataattgaa
tactatccattgatgagccGCGGCACTaccgtaaagctagaatcgcttcg
cgtactcttcgcttgagaaaatgattgacagattgaagtttttcatcccc
gcggtGCGCGCCGCGCGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCTGCTGCTCTTCCCAGGCAAATAATTTCTCAGAATGTCAGAGA
GTCTGGTGCTGAATATATAGTTTAGTGGGTCAAGCTTGTTTTAGTTCTCT
ATCTTTATACAGCCTGAAAACCTCATCTGAGACGGGGGTCATAAACGATC
TTTGTCTATTTTGAAGTTCGTAATCTTTTACTTCTCAAAACCATTTAGAT
TCAGGTTTTGTATATAATAACAAAGATATTTAACTAAAATTTGTTTCATT
AAAGCTATTTTCTTTCAGCGAAATAAGCCTTTAGTAAATATTTAAACCCC
tggttttattttgatatttacaATGTGATTTTATAGCGGGAGTTGGGAAC
CGGCTAGATTGTGTGATCTGATTGGAAATGAGCAAACGCGGGACTCGGCC
CAGGACTTTTTACCCGCGTTTTAAACGCGTTTACGGCAATGTTTATTCtt
tacactttcgttttcaaaatctgttGAACATGGATTTTGGCTTGTGACGA
TTACCTCGCGTAACATCTGTGTCGCTCTCcccacgtgcgtttggtttggg
aacgcgaaacacgaacgcaaactacccatgtctaaacttttcaatatatc
tccagaactaacagattttttgaaattctgtaaaaaggtccaagttcctg
aatagttttactatgttctgtgaaaaaatcataaccatcagtcaaatact
cgttcataTCTATTTAAGATCGAAGACAACaatttgtgaagaaaaataaa
ccttgagcacaaaaaatgcttttttaaacacttttttccaccgaaaaaca
aataacttttatagacttaccttccccaaacattgaagaaggctctacta
attaaagtatataaatgaaataagataagataaaaccttaaaatcaacca
aaatttaccgtgagatcaggtaacttgtatcagtggaggctaacatgcat
agccctcaaatgaatgacctgtctggtcattaaaatacaactacgcagtt
ccgcttgcagctctactctactattttacgacccacggcatggcccgaac
atgttcgggcctcttgattaatactttttaaaaatgcgCGGGTCCGCaca
gtttcggaccatgttcgggccagatttttaaaaacttgctacgatggcca
tgtaatttcaggacccaatatttatattttaaattccttattttagcaaa
caaatttaaaaatcttcatctttaatcaaatatattgttcaaatatcaaa
gttaatcatctattttccaattaagttaggaaaattattaaaaagaatga
tttgaatcttacataataaggtcttctttttattctttttcccttttctc
gtggtcttctcctattcgaagcagaatttttctggatcgttttttgtact
gttatacaactttgtcaatcaaactggtatttggaactttgactttgtct
aatgaaaatatttaacaatggatgatgataaaccaggaagGGTAAATAAA
AGTAAGTTCTACTATTCCTATGATGTTCCTTTAAagacatggcccgaaca
tggtccgaacaaaatgttcgggccgattcaataatacttttttgtggccc
gagcttggtccgaacaggcccgaacatgttcgggccatgccgtgggtcgt
actatttttgttttgatttaactttgtattttaatgaccagccaggtcat
tcattggagggctatgcatgttagcctccactgatgcaagttacccaatc
tcacggtacaaccttttgtccaaagcaaaagacgtgcttttctggcgtcc
atcttgttttagaatgagaattattttcggttccagTTCCcacggtcttt
tttcatccaatcagatcgcgcaatttcacttttgctttcTCTAGTCTAca
ggatttgagtcatgtgacatctctattgaaaaacccgcgcggaatgaaat
agaaatacagggggtcacactactggctacaggaactgaaagcaagcaat
taaggccaatatttttggtttttctgaaggacaaaaggtataggaagctt
tactgtaggagggataaggctgggactatctattGAAAAGATATGaacaa
aaaaggcacttttttgggtgataataagattttacttagaaactttaatt
ctcttacccccgtcttggGCCCCCCTAAtagagcaagggaaccatgttgg
ccaccccttctgaaaatttcagatcaaaacaaaaaaggaaatAATTCCTG
TAACTGGAAGAACAATATtgaaaaaagctggtttttgactgtttgtgatc
ctaaagtgctattttttggtaaaagctatgcaatttatgtttggatttct
agaaagcttacccattcgttgttaatatattttttatttgaaagtaatct
cttcatggaataaaaagataaagtcaaatcttgtagtcgatcatttttca
aagtttttttgctaaaatcgattttcgcatttcgccattttaccctacgc
aaataCACGTGTCCCTTGACCGTCATATAACGACGTAGAGTGTAAATAGA
ATATAAAGCGCTTTTAATTCATTAATCCCTAATCCCACTAATTCCTAAAA
TATGGCTCATGGTCATAATTCATTTAACATTTtacatttctttcttaaaa
gAAGTACCAGCAATTCAAGCTCTTTTTCTACAAAATTTGAGCACTTTTTA
GGCATGAGAAGATCAAAATCTCAGGGCTTTCGGGAGCTTCGCCCCCTAAT
CCCCCCTACTGAAATTTCGCCCGCGCGCCTTTTCcacaagcaaaatttct
tttggcgTGCACCTCACCTTAATCAAATAACAATTCGGCGTGGACTTTGA
TCTTTCAACACTGGCTTGTCTGGCTATAAAACATCTAAAGCGATGGATGA
AAACATAATTTATCTCCTTTTATTGGTGTCCTTGTTGCTCAGGACTGAGA
ATGACAAAATAGTTGcatgattttgcttgaaaatagGGTGGCATTACAGT
ATCAGAAAAGTTCCAGCGTACAACAAGCAGTCAGACGTAATCGATAAAAT
CGATCAATTGATTaactattgattaaaaacaatgATCGATAGCTAATtga
tactcacaattttttagcACTCAATTATATAAATTATCAATATCACcatc
gatttttaatcgataatatcGATTACAGTGTTAGAAATAATTGATAATAT
CGATATATAATCAATAAATCGATAAAATCGATGAAACTCGATCAATCGAT
TAATCAATAGATTAActatcgattagctatcgatttaaatgataataaaa
tcgATTAGTAACGTCTGGAGGaagcaggctagctctaaagctctaaaaca
gcatctaaaaacatgaaaaccagaatatgattttcAATCttggaatcaaa
actataaagtgcacttacaaacattaatatgtcagatctaacaaaattaa
aaacggcactgtcatcattcacaataaaacaaacgtaaaaagccttgtaa
acattccaacaacttccatcaaaatgatctatcacaaCCTAGTCTACCgc
ttttagcgcggtccgagtcTCAAGCGAAGAGGACGTGAAGAAGGATCATC
AGtgaatagtattcaattatcattatacctttattttcattcctagagct
tttgcaaaaaaaaggaaaaatagaaaagttgtattttttactgctctatt
cacatactgtaCTGAATTTGAATAatcttctatgtggcatttcttcaaaa
actaattttgtCCCGTATTTGtgggactttagcttaagtgcttgcgtgca
gcatagggtacaaagtccaaatatgcgtttcccgtaatttttgtatgaag
agttaggtctatactgacaagattcttgttgtagaattttttaTGGGAGG
actcagatggttaattttcaagcgccttcagaggtttaccacTTTAAGAA
AATTATCTTTAGGCAAAAGCGAGGGTCTTTTTTGCatatagtcatctggg
gtaattatTAATTATACAGGAAATTTTGACTTGTTTGGGCATTACTCTGA
AAGTATTAATCCTAGAGATctgatattttgatattttgatattttgttat
CAAAGTATGACCTTTACACAAGATTTAttacttttccttgaaatttagaa
ctttaatgggataaatttctgcggggattaaatttcgcgattgggCCTAT
ccgcaaaattcaaaaattctgcggggacttaatttcgcgaatgaagAGTT
CCCTGACTTTTCGCCTAATTTCGCGGATCAGgattaaatctaatttttct
aaagtgaTTCCAAATTGTGCAAACAAAACttctctcaaaattttgatatg
gtaGTGTGCGAAAATTCGAAAAACAACAAAGAGATTTTCTTCAAAGTGAG
GTTTGAGTAGTCTGATTCACAAACCTTTAGTGGCTATATAGGATACTTTT
TTCATTAGAGTATGAGAAGAAACCTACCTTATTACAGTATTGGAACTAAT
ATTCccgggaattaattttagcgtttttcaatatttttttggcaaaccgc
aaaaatttggacctgcaaaatacaattttcaaacccctaggaaaatgaaa
gaaatttgtccaaaaaagggcaaaactgCAAAGATTAAAACctgcgaaat
gcaatttttccgattttttcaTCCACTTGATGACTTCAAATCCAAGTGCT
ATCATTCAGAAATTTACATAATTTGCATAAGATCAATTCTATTTTAAACT
CTATTTTCTCTCTAGATGACATTATCAGACAACGTTTGCTGGTAGATGGT
GACGGATCTGGGGACGACAAAAAGATTATGACTGCACTTCGAACCATCAT
CAAATGGAGCACAATGTCCTGTGATGATGAAGAAAGGTAAATatggcgaa
aataaaaacatttcttcattttcgcctaatgatgttttttttcttccaat
aaTTGATGATTGTACTTTTTGTTTCCAATAATTGATGATTGTACTTTTTG
TTTCCAATAATTGATGATTGTACTTTTTGTTTCCAACCTTTATCccattt
ttttgccttttttgaaaagtaatgttttagcatttaggccATAGCTTTTT
ATCTAGTTGgccaaatgacccctcaaaNatgtagtgtttccggaaaccgg
ctgggtgaaaaaaaatttatttctgaCCCGGctgcagactatgggttcat
ctatatggttcatcataaagaaaataaagttgaccgttcaatctatcaaa
cgtcgtttggtcagatattcccgcttgtaaatcaggttttgttcgttagt
agttgatacattagtattcaggtcttacttcatactgtttgtacataaaa
gttatctttaaagttctatttcaatgatctttaagttatcaaaaatagta
aaaaaaagtttttcaggccggccgcatgagagattttttccttcacccgc
attccggaaacactacatttctttattttcgcctaattatgttgtttttt
tctaataGTTGATGATTGTACTTTTTGTTTCCAACCTTTATCCCATTTCT
tcgccttttttgaaaagtaatgttttagcatttaggccATAGCTATTTTT
ATCTAGTTGCCCAAATGAccgctcaaaatttaagtttaagtttaagttta
tccttcctcttttCAATGCAAATAGATTGATTCTTTAACAGTGCATAAAA
CgcaagaaaattcacttcaaataAGGGGACGTTTTTCTGGGACCCGGTAG
CATGCTATAAAGTATACTTTTTCATGGATTTTCTTGAATACATCTCATCA
TTGTTGCTTCAGTTAATTTCCCAAAAAGGATTTTAGGTGGAAAATTTGTG
CCATGGCCAAATTAGTCCACGTCAGCTAATTGTTTTTTCGTCCAGAGTCT
CTAACGAAATTTGAGCGTTTCAACTTGTTCAGTTTAACAATGTTAACTTT
AATACCATATGTGTACTGATAATACCTAATGTGTAATTCTCCCTAGTCGT
TCTAAGCTTTTAAAgctgattttctttttatttcaactttTATCTCAATT
TAAGGAACACCCACTACCAGAAGATCATTATGCTGTTGAGACAATGTGAA
TACACAATGACCAAACATCACTTATCATATCTCATGAACATCCAGGAAAG
ACAGAACTACGAGACACTCTATCAACACATTGGTAAATTATTAGACTGAA
CCCCCTTAATTTAAACCTGcgccgtggtgtccttgaaaaagcaaacgagt
tcgtgttaatttttggcgtgttaatttcaaggccgttgaatacttgacta
gtaatattcgtgtaatacaAGGTAAATATCGCATATATAATTGTAAGAAA
TGTtagtcattttttatgtttcattttaattttatttactgtagtatttt
caacacttcctctccttgaggtcagatctctgatcttcaccatatatatt
cCTTTACAAATTAGATATAGGCTATAACCCCAGACAAATCATACGAAAGG
TCTTAAAATGATTCCTTCTGCTTGATACTCAGAGCAACCAGAAAGAAGGG
ACAATGGTAGATGGAGAAATCCATTAAAGGAATTGGCGCCTCCGGGAAGA
TAGCTAGTAAAAAGAGAGCCTAAGGGTTGTCCAATGTCTGTACACAACCc
tgatatctacggctaatttcaaaatccaTTGCCGTAGAGGATTTTTTGTC
ATTGTCTTATCTGATTTGAGATGTTTAAAACCatccgctgcgatggagtg
cagatgagagaggggagacgacgagagaagtTTTGCTATTTATTAATcgt
acttcatcgcagaggtttccgtacgggaatttttttatcaatcagacaat
gcacacagagtgtactacgaaagataaacgtgagatacactctggtacag
agtagatCGTCCTCGACTGTGGTCGCAAACTAACTCACAGAGGGAAGATC
GTTTTTATGATTATCttttttacatttatttttacAGGTGAACAGATTTC
AGTTTGTAGGAAAGAAATTAAAGAGAGCAAAGAAGAATTACAGAGAGCCA
AAGTGGTCCGAAAGAACAAGCAAGGTATTTAAAATGATGATACATCAACA
ACAAGATTCGGTATTCAAATTTCTTCCGTCTAAGACGGATTTTTGTCAGT
ATATAAAGAGGCTATTCTGTCTTAAAATATCTACTTATTTGCTTTGTAAA
ATACATTATCTGTGTCTCAGACGAAAAACTTTGCTCTGCCCACTGAAGAA
TATCCTACTCCccagtttctttttctttaacaaGAGTTTCCTTCGTTTTG
CATAAGATGCCCATTGCCGCACTAAGATTCACTTGGCACTTTTCTAgtgg
aaaaagaccaggacttcgggtaattgaaaaataaacttcGGAAAGTTACG
CAGTTTCGTAAGTAAACAtaagattttccgtacctttagaaaTAGATCCT
TTCCAATCTCCCGGAAAAAATAGCGGAAATATCCGGAAAAGAAAGGAGAA
TCTTATTGTGGGAATGAAAATCTTGTGCAAAACGACGGTACTTTATCATA
TGGCTGAAATATTTCATCTCAATCAAAGAGTTCATCTTTCGATAGTTTTC
CATTATTTTCGTTTTAGAGTATGATTCACTTgcaaaaatcattgaaaaac
aTCCTGAACGCAAGACAACAGAATTGTAAGCTCACTTTTCAAATCTAAAA
TAGATACAAGTATAAGAAATGAATTTCCAATGATAAAATATATActctaa
aatatgcaattttcCTTTAAGGTTAAAAATAGCAATATACTCTACAATAT
GCAAAGAATAGTGATCCTCAAACAATccaataaaatcatttttccaaaag
aaaatgaaaaaaaatagctTGGTAAACCCCTAAAGTCAGCTGTTCCTTCT
GGACTCAGCTGGGCCATCTGCTACTTGACCTTTTAACGCCCTCAAGTCAG
GTCGACGGGAGTTCCATCCATGTATGATTTTagctgttttgaaatttttg
tgttttgtagTCTAAAAGAACAAGTTTGTcaccttgaaaaaaatatatat
acacaGACCCACCTGGAACCTTTCCCACTCGGAAAATCGGCCAAATCacc
gtccccggtgggaaattaccctccaatttttgtccccactgaaattaacc
aaataaaccaatcttcaCTTCAAAATATTATACTATTTTCCTATCCCCAG
TGAATTTTCCgacatgaaaacaaaagaaactaaATCTCCGactataaaaa
atatgggaatatcaatccccgtcGAGTTTCAGTCCTAATtctacccccac
tggctgaaaaaatctgaccgggtttgtgagaagggggtgtatataTTGCT
GAAATTCGGCACATAGGTTCCTGCCAAGGGGTTCTAGAACTACCAGAGAA
AACCGACAGTcgattcaaaaagttttgaacccttttcaagaattttcatg
ACGGCGTAAGATATTTGCAGagttttaaaatataaagtttaCTAAAAGTT
TGCGAAAAAAAGATATAAGTTGCTTATACTCTTAAAGTAAAGAGTTTTTA
ACACCGTCCATTCGATTTTTatatcttctttcttttcttgaaGAGAAATC
AACAATTTACAGAAGGATATCAGTGAATTAAACCTAAAGAAAGAATCGTT
GATGCAGAAGGTACGTATATATCTTTTGAAGTCATCTTCGAAAATTTTAC
ACGATGCAAGAGAACgcgcttttttcataagaatataaagtactctataa
gaatatccatgatgaaattagCCCAAGATTAAGAAAATACTAAGCGAATA
TCCTAATCAAAACAAATTGATAACTAAACCTAAGTTTGCAACTTTTAGGG
TATTTTATACCCCTTAAAAACCATATACATTCTTTAATGAATACACTATG
ATGATAAATTTAGGTCCGGTTTGGATCCTAACCTCTGGAATACGTTGAAG
AGAATATTTTgtttgagctcatccgcgaattTTTAGGTTTTCACGTCGGG
GaataaatttcgcggttggcgCGATAATATTTTCACAGTTTTGTGCCTTT
TTACGCCAACTTAAGCATGTTGGTTGTCGAAGTACGCATTATTAACATAG
CTTCAGCCCcccttacttttttttttttgggggggggctaagaaatattt
tggcctttcaagaacctgggggctaaaattaccaaaatattggGGGGAAC
TAGTTTTtgggggggggctaagaaatattttggcctttcaagaacctggg
ggctaaaattaccaaaatattggGGGGAACTAGTTTTtgggggggggcta
agaaatattttggcctttcaagaacctgggggctaaaattaccaaaatat
tggGGGGAACTAGTTTTtgggggggggctaagaaatattttggcctttca
agaacctgggggctaaaattaccaaaatattggGGGGAACTAGTTTTTGG
GGGGGGGctagatgatctgactgagactctgggggctgttcagctaattt
cgaaagatctcttatcttactattaaatcaaatataaaaagcaaaagatt
tgtaaacataaatattaatacaagtaaaatttagttttcatttatcagta
ctcgcatatgttttttattgacttctctctacGGGGACGGGACCTGAAGT
GTcaggggacctagcacaaggcaatttttttgggggagttaaattgttgg
ggggaccttactttgttggggtTAGCTAGAAACCTGACTGAAGCTATGAT
TAACGCTTacttgatgccagtaaacattttaaaaagtaGTTTATTTAATA
TATCtcaagtttttctaaaaaattttcatgGATAAGGCATTTctaaattt
ccattgggacttaatttcgcggatggcaccaAAATCCGCAAAaactgcga
aatttaatccccgcgaaaattcatCCCATTAAAAGTATTCGATCTTCCTT
TTTGGGTATGACTATTAACGGTGATACGAGTAGAAGCTGGAAAGTTattc
atttgattatttttaatatgatttttactattcttgaacttttaatATGT
TTTAGCTTGAGATGCGACAAAAACAATTTCACGTCTTGTTATACTCAGTA
CAATTACTGCAGCAAATTTTagaaggtaatttttttttgtcaaaacaaaC
CATTATTCAAGCCATAATTTAAGTTTATCAAAGGACAAGCAAGTAGAAGT
AAAGTGTCGAATtgtgaaaattcttaaaaactttcttaaaaaGTGATTTT
GGGGTTACCTTTTTcagggaaaaaatgtcggggtttTAATTAGTCGGGTA
AagatttcgtcacttttcccaaTAAAATTTGCAATTCAGTCACTTCTAac
cgactaaattgtccaaatgaaatagtttccttcactagctcaaaaataaa
cattttttcccGATAAGTTATTTATATTGTTGTTTGATTATCACTTTTGT
AGAGGACAACGATGTTATTGATTTATCGACTGATGACGTAATCAAAACAG
AAACTAAAAGTTCCACCAAATCAAAAAGTGTGGAAGTGATGGACATTTCA
AAATAGTTTGATACCcaaaaaaagaatcaacaaaTTAATAATACATTTGC
TTCTCTCCATGGAAAGAGGAAGTATGAATAAtctatatttcaaaatttta
ttggttttcacttttgaaaattgaagtgAAAAGGTGCAAAAATGGTAGTT
TTCCCGCTCAAAAGACTTGAAAAAATAAGTATTGATACAGTAAAAATTAT
TTGAGATTGAATAATCTTCTCCAGACGCTATTATTTTAATACGCCATCGA
AAGTACCACCATATTTTAAGATGTGCTGAAAGACGTGTATTACTAAACAT
TGTATATAAATGAAAGGAGAACATGGTTGTCATCGATAGCTGTTCTTTCA
AGATACATATAGAGACGGTTAAATAAAGTAGTTGGTTTGATACGagataa
agaaatcaaaaagtagACAAATCTGCAATGGtttacataattttaaaaag
atggaaaatagttgtttttaaaaagttttttaacgaaaaaaatcaaagat
gtaATTTTGGAACACacacaaatttgtttattgGTTTATTGGGTTATAAC
TTTTGAATCCTACAGTCTACGGTGTACATGTATCACCATGAAAACTTGGA
ATCGTTTAACAAAGATCAATTTTGTTGATTATGCGGAAAAGGCAATTACG
TCGAGCAGTAAGATTTTTAAATTCCTCTTTTAATTATCTTTTAAAACCAT
TTTTTTTGTCTAAATTGCAGATAcatgctttttcttttataagaatacac
tttataagagaATTCATGATGGAATTGaccgaaaagttaagaatattcta
agaatatcaccatcatggagtTTGGCAGCAGAA Coding sequence (CDS) from alignment at sc0000248:100801..114083+ >TCONS_00016713 ID=TCONS_00016713|Name=TCONS_00016713|organism=Clytia hemisphaerica|type=CDS|length=5208bp|location=Sequence derived from alignment at sc0000248:100801..114083+ (Clytia hemisphaerica)
ATGGCGGTTTCGGAGgATGACATTATCAGACAACGTTTGCTGGTAGATGG
TGACGGATCTGGGGACGACAAAAAGATTATGACTGCACTTCGAACCATCA
TCAAATGGAGCACAATGTCCTGTGATGATGAAGAAAGGAACACCCACTAC
CAGAAGATCATTATGCTGTTGAGACAATGTGAATACACAATGACCAAACA
TCACTTATCATATCTCATGAACATCCAGGAAAGACAGAACTACGAGACAC
TCTATCAACACATTGGTGAACAGATTTCAGTTTGTAGGAAAGAAATTAAA
GAGAGCAAAGAAGAATTACAGAGAGCCAAAGTGGTCCGAAAGAACAAGCA
AGAGTATGATTCACTTgcaaaaatcattgaaaaacaTCCTGAACGCAAGA
CAACAGAATTAGAAATCAACAATTTACAGAAGGATATCAGTGAATTAAAC
CTAAAGAAAGAATCGTTGATGCAGAAGCTTGAGATGCGACAAAAACAATT
TCACGTCTTGTTATACTCAGTACAATTACTGCAGCAAATTTTagaagAGG
ACAACGATGTTATTGATTTATCGACTGATGACGTAATCAAAACAGAAACT
AAAAGTTCCACCAAATCAAAAAGTGTGGAAGTGATGGACATTTCAAAATA
GATGGCGGTTTCGGAGgATGACATTATCAGACAACGTTTGCTGGTAGATG
GTGACGGATCTGGGGACGACAAAAAGATTATGACTGCACTTCGAACCATC
ATCAAATGGAGCACAATGTCCTGTGATGATGAAGAAAGGAACACCCACTA
CCAGAAGATCATTATGCTGTTGAGACAATGTGAATACACAATGACCAAAC
ATCACTTATCATATCTCATGAACATCCAGGAAAGACAGAACTACGAGACA
CTCTATCAACACATTGGTGAACAGATTTCAGTTTGTAGGAAAGAAATTAA
AGAGAGCAAAGAAGAATTACAGAGAGCCAAAGTGGTCCGAAAGAACAAGC
AAGAGTATGATTCACTTgcaaaaatcattgaaaaacaTCCTGAACGCAAG
ACAACAGAATTAGAAATCAACAATTTACAGAAGGATATCAGTGAATTAAA
CCTAAAGAAAGAATCGTTGATGCAGAAGCTTGAGATGCGACAAAAACAAT
TTCACGTCTTGTTATACTCAGTACAATTACTGCAGCAAATTTTagaagAG
GACAACGATGTTATTGATTTATCGACTGATGACGTAATCAAAACAGAAAC
TAAAAGTTCCACCAAATCAAAAAGTGTGGAAGTGATGGACATTTCAAAAT
AGATGGCGGTTTCGGAGgATGACATTATCAGACAACGTTTGCTGGTAGAT
GGTGACGGATCTGGGGACGACAAAAAGATTATGACTGCACTTCGAACCAT
CATCAAATGGAGCACAATGTCCTGTGATGATGAAGAAAGGAACACCCACT
ACCAGAAGATCATTATGCTGTTGAGACAATGTGAATACACAATGACCAAA
CATCACTTATCATATCTCATGAACATCCAGGAAAGACAGAACTACGAGAC
ACTCTATCAACACATTGGTGAACAGATTTCAGTTTGTAGGAAAGAAATTA
AAGAGAGCAAAGAAGAATTACAGAGAGCCAAAGTGGTCCGAAAGAACAAG
CAAGAGTATGATTCACTTgcaaaaatcattgaaaaacaTCCTGAACGCAA
GACAACAGAATTAGAAATCAACAATTTACAGAAGGATATCAGTGAATTAA
ACCTAAAGAAAGAATCGTTGATGCAGAAGCTTGAGATGCGACAAAAACAA
TTTCACGTCTTGTTATACTCAGTACAATTACTGCAGCAAATTTTagaagA
GGACAACGATGTTATTGATTTATCGACTGATGACGTAATCAAAACAGAAA
CTAAAAGTTCCACCAAATCAAAAAGTGTGGAAGTGATGGACATTTCAAAA
TAGATGGCGGTTTCGGAGgATGACATTATCAGACAACGTTTGCTGGTAGA
TGGTGACGGATCTGGGGACGACAAAAAGATTATGACTGCACTTCGAACCA
TCATCAAATGGAGCACAATGTCCTGTGATGATGAAGAAAGGAACACCCAC
TACCAGAAGATCATTATGCTGTTGAGACAATGTGAATACACAATGACCAA
ACATCACTTATCATATCTCATGAACATCCAGGAAAGACAGAACTACGAGA
CACTCTATCAACACATTGGTGAACAGATTTCAGTTTGTAGGAAAGAAATT
AAAGAGAGCAAAGAAGAATTACAGAGAGCCAAAGTGGTCCGAAAGAACAA
GCAAGAGTATGATTCACTTgcaaaaatcattgaaaaacaTCCTGAACGCA
AGACAACAGAATTAGAAATCAACAATTTACAGAAGGATATCAGTGAATTA
AACCTAAAGAAAGAATCGTTGATGCAGAAGCTTGAGATGCGACAAAAACA
ATTTCACGTCTTGTTATACTCAGTACAATTACTGCAGCAAATTTTagaag
AGGACAACGATGTTATTGATTTATCGACTGATGACGTAATCAAAACAGAA
ACTAAAAGTTCCACCAAATCAAAAAGTGTGGAAGTGATGGACATTTCAAA
ATAGATGGCGGTTTCGGAGgATGACATTATCAGACAACGTTTGCTGGTAG
ATGGTGACGGATCTGGGGACGACAAAAAGATTATGACTGCACTTCGAACC
ATCATCAAATGGAGCACAATGTCCTGTGATGATGAAGAAAGGAACACCCA
CTACCAGAAGATCATTATGCTGTTGAGACAATGTGAATACACAATGACCA
AACATCACTTATCATATCTCATGAACATCCAGGAAAGACAGAACTACGAG
ACACTCTATCAACACATTGGTGAACAGATTTCAGTTTGTAGGAAAGAAAT
TAAAGAGAGCAAAGAAGAATTACAGAGAGCCAAAGTGGTCCGAAAGAACA
AGCAAGAGTATGATTCACTTgcaaaaatcattgaaaaacaTCCTGAACGC
AAGACAACAGAATTAGAAATCAACAATTTACAGAAGGATATCAGTGAATT
AAACCTAAAGAAAGAATCGTTGATGCAGAAGCTTGAGATGCGACAAAAAC
AATTTCACGTCTTGTTATACTCAGTACAATTACTGCAGCAAATTTTagaa
gAGGACAACGATGTTATTGATTTATCGACTGATGACGTAATCAAAACAGA
AACTAAAAGTTCCACCAAATCAAAAAGTGTGGAAGTGATGGACATTTCAA
AATAGATGGCGGTTTCGGAGgATGACATTATCAGACAACGTTTGCTGGTA
GATGGTGACGGATCTGGGGACGACAAAAAGATTATGACTGCACTTCGAAC
CATCATCAAATGGAGCACAATGTCCTGTGATGATGAAGAAAGGAACACCC
ACTACCAGAAGATCATTATGCTGTTGAGACAATGTGAATACACAATGACC
AAACATCACTTATCATATCTCATGAACATCCAGGAAAGACAGAACTACGA
GACACTCTATCAACACATTGGTGAACAGATTTCAGTTTGTAGGAAAGAAA
TTAAAGAGAGCAAAGAAGAATTACAGAGAGCCAAAGTGGTCCGAAAGAAC
AAGCAAGAGTATGATTCACTTgcaaaaatcattgaaaaacaTCCTGAACG
CAAGACAACAGAATTAGAAATCAACAATTTACAGAAGGATATCAGTGAAT
TAAACCTAAAGAAAGAATCGTTGATGCAGAAGCTTGAGATGCGACAAAAA
CAATTTCACGTCTTGTTATACTCAGTACAATTACTGCAGCAAATTTTaga
agAGGACAACGATGTTATTGATTTATCGACTGATGACGTAATCAAAACAG
AAACTAAAAGTTCCACCAAATCAAAAAGTGTGGAAGTGATGGACATTTCA
AAATAGATGGCGGTTTCGGAGgATGACATTATCAGACAACGTTTGCTGGT
AGATGGTGACGGATCTGGGGACGACAAAAAGATTATGACTGCACTTCGAA
CCATCATCAAATGGAGCACAATGTCCTGTGATGATGAAGAAAGGAACACC
CACTACCAGAAGATCATTATGCTGTTGAGACAATGTGAATACACAATGAC
CAAACATCACTTATCATATCTCATGAACATCCAGGAAAGACAGAACTACG
AGACACTCTATCAACACATTGGTGAACAGATTTCAGTTTGTAGGAAAGAA
ATTAAAGAGAGCAAAGAAGAATTACAGAGAGCCAAAGTGGTCCGAAAGAA
CAAGCAAGAGTATGATTCACTTgcaaaaatcattgaaaaacaTCCTGAAC
GCAAGACAACAGAATTAGAAATCAACAATTTACAGAAGGATATCAGTGAA
TTAAACCTAAAGAAAGAATCGTTGATGCAGAAGCTTGAGATGCGACAAAA
ACAATTTCACGTCTTGTTATACTCAGTACAATTACTGCAGCAAATTTTag
aagAGGACAACGATGTTATTGATTTATCGACTGATGACGTAATCAAAACA
GAAACTAAAAGTTCCACCAAATCAAAAAGTGTGGAAGTGATGGACATTTC
AAAATAGATGGCGGTTTCGGAGgATGACATTATCAGACAACGTTTGCTGG
TAGATGGTGACGGATCTGGGGACGACAAAAAGATTATGACTGCACTTCGA
ACCATCATCAAATGGAGCACAATGTCCTGTGATGATGAAGAAAGGAACAC
CCACTACCAGAAGATCATTATGCTGTTGAGACAATGTGAATACACAATGA
CCAAACATCACTTATCATATCTCATGAACATCCAGGAAAGACAGAACTAC
GAGACACTCTATCAACACATTGGTGAACAGATTTCAGTTTGTAGGAAAGA
AATTAAAGAGAGCAAAGAAGAATTACAGAGAGCCAAAGTGGTCCGAAAGA
ACAAGCAAGAGTATGATTCACTTgcaaaaatcattgaaaaacaTCCTGAA
CGCAAGACAACAGAATTAGAAATCAACAATTTACAGAAGGATATCAGTGA
ATTAAACCTAAAGAAAGAATCGTTGATGCAGAAGCTTGAGATGCGACAAA
AACAATTTCACGTCTTGTTATACTCAGTACAATTACTGCAGCAAATTTTa
gaagAGGACAACGATGTTATTGATTTATCGACTGATGACGTAATCAAAAC
AGAAACTAAAAGTTCCACCAAATCAAAAAGTGTGGAAGTGATGGACATTT
CAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016713-exon-sc0000248-1491911889:100801..101257 | TCONS_00016713-exon-sc0000248-1491911889:100801..101257 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1510915933:100801..101257 | TCONS_00016713-exon-sc0000248-1510915933:100801..101257 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1575043694:100801..101257 | TCONS_00016713-exon-sc0000248-1575043694:100801..101257 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1491911889:107466..107586 | TCONS_00016713-exon-sc0000248-1491911889:107466..107586 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1510915933:107466..107586 | TCONS_00016713-exon-sc0000248-1510915933:107466..107586 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1575043694:107466..107586 | TCONS_00016713-exon-sc0000248-1575043694:107466..107586 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1491911889:108755..108882 | TCONS_00016713-exon-sc0000248-1491911889:108755..108882 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1510915933:108755..108882 | TCONS_00016713-exon-sc0000248-1510915933:108755..108882 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1575043694:108755..108882 | TCONS_00016713-exon-sc0000248-1575043694:108755..108882 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1491911889:109688..109774 | TCONS_00016713-exon-sc0000248-1491911889:109688..109774 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1510915933:109688..109774 | TCONS_00016713-exon-sc0000248-1510915933:109688..109774 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1575043694:109688..109774 | TCONS_00016713-exon-sc0000248-1575043694:109688..109774 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1491911889:110318..110375 | TCONS_00016713-exon-sc0000248-1491911889:110318..110375 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1510915933:110318..110375 | TCONS_00016713-exon-sc0000248-1510915933:110318..110375 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1575043694:110318..110375 | TCONS_00016713-exon-sc0000248-1575043694:110318..110375 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1491911889:111294..111360 | TCONS_00016713-exon-sc0000248-1491911889:111294..111360 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1510915933:111294..111360 | TCONS_00016713-exon-sc0000248-1510915933:111294..111360 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1575043694:111294..111360 | TCONS_00016713-exon-sc0000248-1575043694:111294..111360 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1491911889:112756..112825 | TCONS_00016713-exon-sc0000248-1491911889:112756..112825 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1510915933:112756..112825 | TCONS_00016713-exon-sc0000248-1510915933:112756..112825 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1575043694:112756..112825 | TCONS_00016713-exon-sc0000248-1575043694:112756..112825 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1491911889:113153..114083 | TCONS_00016713-exon-sc0000248-1491911889:113153..114083 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1510915933:113153..114083 | TCONS_00016713-exon-sc0000248-1510915933:113153..114083 | Clytia hemisphaerica | exon |
| TCONS_00016713-exon-sc0000248-1575043694:113153..114083 | TCONS_00016713-exon-sc0000248-1575043694:113153..114083 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:100801..114083 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008501 | THOC7/Mft1 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000445 | THO complex part of transcription export complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006397 | mRNA processing |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006397 |
mRNA processing |
| cellular_component |
GO:0000445 |
THO complex part of transcription export complex |
Blast
BLAST of TCONS_00016713 vs. Swiss-Prot (Human)
Match: THOC7 (THO complex subunit 7 homolog OS=Homo sapiens GN=THOC7 PE=1 SV=3) HSP 1 Score: 166.777 bits (421), Expect = 3.246e-47 Identity = 85/183 (46.45%), Postives = 130/183 (71.04%), Query Frame = 1
Query: 445 AVSEDDIIRQRLLVDGDGSGDDKKIMTALRTIIKWSTMSCDDEERNTHYQKIIMLLRQCEYTMTKHHLSYLMNIQERQNYETLYQHIGEQISVCRKEIKESKEELQRAKVVRKNKQEYDSLAKIIEKHPERKTTELEINNLQKDISELNLKKESLMQKLEMRQKQFHVLLYSVQLLQQILEED 993
AV++D++IR+RLL+DGDG+GDD++I +++ IKW S EE + YQ+++ L QCE++M K L Y MN++E +NYE +Y+ I I+ ++I E K+++ +AK +RKN+QEYD+LAK+I+ HP+R T E+ L K++ L+ KES+ KLE+R+KQFHVLL ++ LQQ LE D
Sbjct: 3 AVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCN-SGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLEND 184
The following BLAST results are available for this feature:
|
