TCONS_00016713-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016713-protein
Unique NameTCONS_00016713-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length216

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016713-protein ID=TCONS_00016713-protein|Name=TCONS_00016713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MAVSEDDIIRQRLLVDGDGSGDDKKIMTALRTIIKWSTMSCDDEERNTHY
QKIIMLLRQCEYTMTKHHLSYLMNIQERQNYETLYQHIGEQISVCRKEIK
ESKEELQRAKVVRKNKQEYDSLAKIIEKHPERKTTELEINNLQKDISELN
LKKESLMQKLEMRQKQFHVLLYSVQLLQQILEEDNDVIDLSTDDVIKTET
KSSTKSKSVEVMDISK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009344XLOC_009344Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016713TCONS_00016713Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008501THOC7/Mft1
Vocabulary: Cellular Component
TermDefinition
GO:0000445THO complex part of transcription export complex
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
cellular_component GO:0000445 THO complex part of transcription export complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 132..166
NoneNo IPR availableCOILSCoilCoilcoord: 92..112
IPR008501THO complex subunit 7/Mft1PFAMPF05615THOC7coord: 6..138
e-value: 2.8E-26
score: 92.2

Blast
[Close]
BLAST of TCONS_00016713-protein vs. Swiss-Prot (Human)
Match: THOC7 (THO complex subunit 7 homolog OS=Homo sapiens GN=THOC7 PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 1.815e-52
Identity = 85/183 (46.45%), Postives = 130/183 (71.04%), Query Frame = 0 
Query:    2 AVSEDDIIRQRLLVDGDGSGDDKKIMTALRTIIKWSTMSCDDEERNTHYQKIIMLLRQCEYTMTKHHLSYLMNIQERQNYETLYQHIGEQISVCRKEIKESKEELQRAKVVRKNKQEYDSLAKIIEKHPERKTTELEINNLQKDISELNLKKESLMQKLEMRQKQFHVLLYSVQLLQQILEED 184
            AV++D++IR+RLL+DGDG+GDD++I   +++ IKW   S   EE  + YQ+++  L QCE++M K  L Y MN++E +NYE +Y+ I   I+   ++I E K+++ +AK +RKN+QEYD+LAK+I+ HP+R  T  E+  L K++  L+  KES+  KLE+R+KQFHVLL ++  LQQ LE D
Sbjct:    3 AVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCN-SGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLEND 184
The following BLAST results are available for this feature:
BLAST of TCONS_00016713-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
THOC71.815e-5246.45THO complex subunit 7 homolog OS=Homo sapiens GN=T... [more]
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