TCONS_00016519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016519
Unique NameTCONS_00016519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016519 ID=TCONS_00016519|Name=TCONS_00016519|organism=Clytia hemisphaerica|type=transcript|length=1451bp
gtttattgttttgaaaataattttgttctttttttgtaaaataacaaTCA
AAATAAATTGCTGTGTTGATGAAATAGGATCATTTTAAATTTGTTCACAC
GCGTAAAGAATAACAATTTGAGTTTTTTCACTGGAAAATATCAGTAACTT
TATTTGCTGTAATGGGACCATGTATAAATTACTATTAAGATTAAAGTTTG
GTTTTCTTCTAATGTAACTGCTAGAGGCACAGCACTAAAGGACGATCAGT
TTAAACTGTTGATTTGATTTTCGAAACATGTTTTTGATTGATTATAAgGT
AAAAAAGCGACAGAAGAGTCGAATTCGGCGTCAAAGGGCCATGGATTCCA
GCGAGGACGATGGCTACTTTTGGGTCCACTCCGAAGCTGAAATCGTAAAG
AATTACAAGCAAgtgaaacatttgaaaatgtATGGAACACACGGTAAAAA
ACCCGGACAGTTTCTCGATCCAATGGGTATCTCAACTATGGATGGTTTTG
TATGTGTTACAGATCCAATGAAAAATTCGCTGACAGTTTTTAACGAGTCC
ACTATACGTAGCCAATCTAAAGGAGACATTATGATAGCAGCTGATATAAA
GCCACTCAAAGAATGTTATTTTTCATCTGTTTTTGATGTAGCAGTACATG
AATCCAGTAAAAACGTTCTGGTCAGTGATCCAGTCAAGAAATGTATACAT
TGCGTCTCCCTTGGTGACGATATACGTAAAAATAACACCATCTTTGATTC
GAATATCACGGTATCGAAGTGTGATACTTTATCTGGGATATGCGTAACAC
AGAACGGATTAATCGGAGCATTAGATAGTGAATCAGGACGTGTGTTGGTA
TGCGACGGACATGGCGACATAAAACATTCCTTCGGGAGTGAAGGATCTGA
TAAAGGACAGTTCTGTCTTCCACAATTCATTCATTGGGATAACCTTAATC
AACGCTTTATTGTTTCAGATACTGCGAATGCGCGTGTCCAACTTTTCACA
GCTGACGGACAGTTCTTGTTTTCGTTTGGTGAATTCGGTTTTAAAGATGG
CGGATGTTTTAAATATCCATCTGGTATAACGACTGATGATCATGGACGTA
TTTTTGTGGTTGACCAAGGATTACACGAGGTGCAAATCTTTGATAAAGAC
GGTCACTGGTTGCACTCACTAGGAAAAGCAGGAATTATGCCAGGATGCTT
CAACAGTCCGAAATCGTTGTCTTTGTTTTCGAATGGTGATTTAGTTGTAA
CGGATAGCTTGAATAGTCGGTTACAAGTGTTCGGTTGAAGGTTGCGGTGC
TTTGAAtatgttttatcaaaaaatgaatttttacaCACAAATTTATTAAT
GAACGAAATACTTTCTTATACACCTTTGTATTATTTAATTTACTGCGAcg
ctaaaaaagaaaataaattatttcaatGGATTTTAAGATATAATCAAAat
c
Run BLAST on NCBI

transcript from alignment at sc0000241:79209..84249+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016519 ID=TCONS_00016519|Name=TCONS_00016519|organism=Clytia hemisphaerica|type=transcript|length=5041bp|location=Sequence derived from alignment at sc0000241:79209..84249+ (Clytia hemisphaerica)
gtttattgttttgaaaataattttgttctttttttgtaaaataacaaTCA
AAATAAATTGCTGTGTTGATGAAATAGGATCATTTTAAATTTGTTCACAC
GCGTAAAGAATAACAATTTGAGTTTTTTCACTGGAAAATATCAGTAACTT
TATTTGCTGTAATGGGACCATGTATAAATTACTATTAAGATTAAAGTTTG
GTTTTCTTCTAATGTAACTGCTAGAGGCACAGCACTAAAGGACGATCAGT
TTAAACTGTTGATTTGATTTTCGAAACATGTTTTTGATTGATTATAAggt
atttaactttttgtttatattttgaatCTTTAAAAATAGCATCTTTCCTA
AAAATTGTTTAAACAAGTTATAAGGATTTCTACATCTTTTTCCAAGTTAA
ATATATATATTACCTTTCTAAGTCTAGcatatgataaaaaaattatatat
aaaagTCCTATGAAATAGATAAAAGCGTAACTAGTCTAGCATCTAGTATA
AATGTTAAAAAAGTGTAAAACTCAAATATGTtgtaatgttttaaaaaatt
tctttctaaatttatgttttgtttattctttttattttattattatttta
ttttaattcatTCAAAACTATTTCAAGACAGGATAAGATCCAATAAAGTC
TCTCTCAGTTTTGTCTCTCTTTTATCAGCCACACCATTCcgtttcttcaa
aaaatcaatgtCATTTGTCAGTTCTTTTCCAGAAaggtttttcagatatt
ttccTTTTGTGAATCGTAAGGAAGACATTGTTTCTTTTGCTACTTCCTTC
AAAGATTCTGTCTCATCAAAAGTCATATCAGAAGTGTTGTTTATAGCTTT
ATCAATCAAATCTAAGTTTTTGATTTGGTAAGAGTATCTGGAATCATTCA
AAATATCTTCGCTTTGTTTTGATAGTGTTTCCATGCATTCAACAATGATC
TCGTTTGTGACTAAAACATCCATCATTGCATCGTGTAAACCGTCTCCATC
TCCAGTAACCATTTTTACAGGTTCAAGTTTCTTCTTTTTGGGACTTGATA
CACTGTAGGAAACAACCTGCTTTTTAGCACTTTCAATGCCTAAATGATTT
GCTACATCAACCAAGCGATAGCGATCTAACTTTGGAAAGGCTGCAATGCT
CATTTTATAAGTGTCAACAAGTCTTATATCAAGCCCTTTTAGTAGCTTTA
TCCATGGTATCCCTTGCTGCTGATTTATACCAAGTTTCATGAAAGCATTA
GTCAAAAACTCCCAGTCGAAGAGAACATTGTGTCCAAAAACATATTTGAC
ATTgttgaaaaactttaaaatattctCTGCATGGAAATGAAAAGActttt
tctttaataaaatATCAGGACTTATCTTGTGAATCTTGAATCCATTAAGC
TGGTTTTCTCTTGAAATTTGTGGATTAATATACTCATCAAAAacttcttg
ttttgtttttgagagaacTTTGATCATTGACAATTGCACGATTCTGTCTT
TATTTTCATCCAACCCAGTTGTTTcacaatcaaatacaatataaGGATAA
TGATCACCTTTATTTTCTGGAACATTTGAAGATTGTCCATttgaatcatt
ttcaaattttacttcAAAAACAGCCAAAACAGGAGTGGGAAGATTAGAAG
TCGCATTTtcagccgccatctttgtttttgttatgatttgaaaTTACCGG
AAAGTTGATAGTCCGTATAGTAATATTGCCGGTATTTAGACAAATCTATG
TATTTAGACACAAAAAGCGCGGGAAATTATTGAGCGGCCGCCGGAGCGGA
TTGCGTAAAAGACATTGcttattttgccaaaaaatacACTGTACGGGTGG
GCTATTTCCCAAAGGtgatattcaatttcatttattCAATACATTACAAC
AATCAGgcaaagaacaattttatttccTTCTCCAAGTCTCAATAAGAATC
AGCGGTATCCAATTATCTTTTAATTGGTCATTACGTCATCTAATCTAATT
ATTTTTTGAAGCAATATCAATTcattaaaagaaaaagtttattttgtcGT
GTTTTGTGTGTGTTGTGTGTTTATTATTGTGCTCTTTTTGCTGATGATAG
TACATGTTGGAAAGTTATAGAAAGTTATTCAGTGTTTTTGAACAAATTCA
ACTTGTTTATTGGAGGCATTTAAGTTATCTTTGCTTCTCAAGTACTACTT
TCTTTTTTAGTTCTACAAAAAGAAATTCAGCAAGTTATTATTTAAGAAGA
TACTTAAATACAGTAAATATAGACTAGTCCGTCCATTTTcatttgaataa
tttttaacGACAATTAAAGCacagaaattttctttcaactttcattgttt
gtaacaaaaaacATTATATGAAATTGTGCTTATTGNATCCAACCCAGTTG
TTTcacaatcaaatacaatataaGGATAATGATCACCTTTATTTTCTGGA
ACATTTGAAGATTGTCCATttgaatcattttcaaattttacttcAAAAAC
AGCCAAAACAGGAGTGGGAAGATTAGAAGTCGCATTTtcagccgccatct
ttgtttttgttatgatttgaaaTTACCGGAAAGTTGATAGTCCGTATAGT
AATATTGCCGGTATTTAGACAAATCTATGTATTTAGACCGGAGCTCAATC
CAAAAAGCGCGGGAAATTATTGAGCGGCCGCCGGAGCGGATTGCGTAAAA
GACATTGcttattttgccaaaaaatacACTGTACGGGTGGGCTATTTCCC
AAAGGtgatattcaatttcatttattCAATACAATAATCAGGCAAAGAAC
AATATTAATTTTATTTCCTTCTCTCCAAGTCTCAATAAGAATCAGCGGTA
TCCAATTATCTTTTAATTGGTCATGCATTACGTCATCTAatctaattaat
ttttgaagcaatatcaattcattaaaagaaaaagtttattttgtcGTGTT
TTGTGTGTGTTGTGTGTTTATTATTGTGTTCTTTTTGCTGATGATAGTAC
ATGTTGGAAAGTTATAGAAAGTTATTCAGTGTTTTTGAACAAATTTATCT
TGTTTATTGGAGGCACTTTGCTTCTCAAGTGCAGAACTTTCTTTTTTAGT
TCTACAAAATGAAGTTCAACAAGTTATTATTTAAGAAGATACTTAAATAC
AGTAAATATAGACTAGTCCGTCCATTTTcatttgaataatttttaacGAC
AAATAAAGCacagaaattttctttcaactttcattgtttgtaacaaaaaa
cATTATATGAAATTGTGCTTATTGGACAGTTTTTCCAGGGTTTGACATCT
TTCAGACAATTCTTTTCCTGAGTCTTGTAAACTTAAACAAATAGAAAAAG
TATAACTGACACAACTGGCAGTTAGGAAAGTCTCAAATTTCATGCCTAAA
GCCAAATAtgtaaaaagtcaaaacaaaaaaggtaTATGACAGTCATATGA
TATCCAACTGGTCTGTACTTTCGTTGTTAAAAAGTTGATTCGATATACAT
GCCATCACACAAACTATGTACTTTCTGAAAAAGATCTTTTAAGAGTTGTT
GTTATATAATAATTGTATAAAGTTTCAAATCAGAAGCACATGACCTCACG
TTTGTCAAGTTTTGTCGGTAAAACTGTTTTTGTAACAAAGATGGCGCATG
ACGAGAACTTTCTGACAGAGAGTGAAGAGAACGACGATAGCTTGAACGAA
CCGGTAACTTCAATCTACTTGATTTTGAGCTTAGATAGAACCAGTTTAGA
ATGAAGTCGGAGataatagatttaaaaaaagtttagatGACCGTCCATTT
ATTCATTGATAGCCAGTCAGTTAACAAATCTTTTGAAAGCCTCCTCACTT
TTTGAATTAAAACCTTTTTATCCACCTTTTCACTTCAGGTAAAAAAGCGA
CAGAAGAGTCGAATTCGGCGTCAAAGGGCCATGGATTCCAGCGAGGACGA
TGGCTACTTTTGGGTCCACTCCGAAGCTGAAATCGTAAAGAATTACAAGC
AAgtgaaacatttgaaaatgtATGGAACACACGGTAAAAAACCCGGACAG
TTTCTCGATCCAATGGGTATCTCAACTATGGATGGTTTTGTATGTGTTAC
AGATCCAATGAAAAATTCGCTGACAGTTTTTAACGAGTCCACTATACGTA
GCCAATCTAAAGGAGACATTATGATAGCAGCTGATATAAAGCCACTCAAA
GAATGTTATTTTTCATCTGTTTTTGATGTAGCAGTACATGAATCCAGTAA
AAACGTTCTGGTCAGTGATCCAGTCAAGAAATGTATACATTGCGTCTCCC
TTGGTGACGATATACGTAAAAATAACACCATCTTTGATTCGAATATCACG
GTATCGAAGTGTGATACTTTATCTGGGATATGCGTAACACAGAACGGATT
AATCGGAGCATTAGATAGTGAATCAGGACGTGTGTTGGTATGCGACGGAC
ATGGCGACATAAAACATTCCTTCGGGAGTGAAGGATCTGATAAAGGACAG
TTCTGTCTTCCACAATTCATTCATTGGGATAACCTTAATCAACGCTTTAT
TGTTTCAGATACTGCGAATGCGCGTGTCCAACTTTTCACAGCTGACGGAC
AGTTCTTGTTTTCGTTTGGTGAATTCGGTTTTAAAGATGGCGGATGTTTT
AAATATCCATCTGGTATAACGACTGATGATCATGGACGTATTTTTGTGGT
TGACCAAGGATTACACGAGGTGCAAATCTTTGATAAAGACGGTCACTGGT
TGCACTCACTAGGAAAAGCAGGAATTATGCCAGGATGCTTCAACAGTCCG
AAATCGTTGTCTTTGTTTTCGAATGGTGATTTAGTTGTAACGGATAGCTT
GAATAGTCGGTTACAAGTGTTCGGTTGAAGGTTGCGGTGCTTTGAAtatg
ttttatcaaaaaatgaatttttacaCACAAATTTATTAATGAACGAAATA
CTTTCTTATACACCTTTGTATTATTTAATTTACTGCGAcgctaaaaaaga
aaataaattatttcaatGGATTTTAAGATATAATCAAAatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009234XLOC_009234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016519-exon-sc0000241-1491911889:79209..79506TCONS_00016519-exon-sc0000241-1491911889:79209..79506Clytia hemisphaericaexon
TCONS_00016519-exon-sc0000241-1510915933:79209..79506TCONS_00016519-exon-sc0000241-1510915933:79209..79506Clytia hemisphaericaexon
TCONS_00016519-exon-sc0000241-1575043694:79209..79506TCONS_00016519-exon-sc0000241-1575043694:79209..79506Clytia hemisphaericaexon
TCONS_00016519-exon-sc0000241-1491911889:83097..84249TCONS_00016519-exon-sc0000241-1491911889:83097..84249Clytia hemisphaericaexon
TCONS_00016519-exon-sc0000241-1510915933:83097..84249TCONS_00016519-exon-sc0000241-1510915933:83097..84249Clytia hemisphaericaexon
TCONS_00016519-exon-sc0000241-1575043694:83097..84249TCONS_00016519-exon-sc0000241-1575043694:83097..84249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241supercontigsc0000241:79209..84249 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.58305	6.72323	48.1997	54.3936	19.5603	18.0571	9.557	11.9054	8.51717	25.7353	9.93895	18.7272	21.9414	8.24436	14.2437	26.4222	7.4599	8.18788	17.8703	18.1307	8.6961	16.1544	18.238	14.907	3.72914	4.4565	21.9397	17.318	210.982	156.941
Blast
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BLAST of TCONS_00016519 vs. Swiss-Prot (Human)
Match: LIN41 (E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 8.527e-25
Identity = 64/166 (38.55%), Postives = 90/166 (54.22%), Query Frame = 2 
Query:  785 GICVTQNGLIGALDSESGRVLVCDGHGDIKHSFGSEGSDKGQFCLPQFIHWDNLNQRFIVSDTANARVQLFTADGQFLFSFGEFGFKDGGCFKYPSGITTDDHGRIFVVDQGLHEVQIFDKDGHWLHSLGKAGIMPGCFNSPKSLSLFSNGDLVVTDSLNSRLQVF 1282
            G+ V + G I   D  + R+ V    G   H FG+ GS  GQF  P  +  D  ++R +V+D  N R+Q+FT +GQFL  FGE G K+G  F YP  +  +  G+I V D   H +Q+F  DG +L+  G  G +   F+SP+ ++    G LVVTD  N RL V 
Sbjct:  611 GVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDA-SRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQ-FNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVI 774

HSP 2 Score: 94.7449 bits (234), Expect = 1.977e-20
Identity = 58/152 (38.16%), Postives = 82/152 (53.95%), Query Frame = 2 
Query:  830 ESGRVLVCDGHGDIKHSFGSEGSDKGQFCLPQFIHWDNLNQRFIVSDTANARVQLFTADGQFLFSFGEFGFKDGGCFKYPSGITTDDHGRIFVVDQGLHEVQIFDKDGHWLHSLGKAGIMPGCFNSPKSLSLFSNGDLVVTDSLNSRLQVFG 1285
            +SGR  V  G G    SFGSEG   G+ C P  +  D      IV+D +N R+Q+F   G F   FG  G + G  F  P+G+  D   RI V D+  H +QIF  +G +L   G+ G   G FN P  +++ S G ++V+D+ N R+Q+FG
Sbjct:  581 KSGRSYV--GIGLPGLSFGSEGDSDGKLCRPWGVSVDK-EGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQ-FDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFG 728

HSP 3 Score: 81.2629 bits (199), Expect = 4.153e-16
Identity = 73/238 (30.67%), Postives = 106/238 (44.54%), Query Frame = 2 
Query:  431 YGTHGKKPGQFLDPMGIST-MDGFVCVTDPMKNSLTVFNESTIRSQSKGDIMIAADIKPLKECYFSSVFDVAVHESSKNVLVSDPVKKCIHCVSLGDDIRKNNTIFDSNITVSKCDTLSGICVTQNGLIGALDSESGRVLVCDGHGDIKHSFGSEGSDKGQFCLPQFIHWDNLNQRFIVSDTANARVQLFTADGQFLFSFGEFGFKDGGCFKYPSGITTDDHGRIFVVDQGLHEVQIF 1141
            +GT G +PGQF  P G++      + V D   + + +F         +G  ++    K  K   F+  +DVAV+   K +LVSD     I      D +  N   F+  +     D+  G+     G +   D  + R+LV           GSEG+  GQF  PQ +  D    R IV+D+ N RVQ+F ++G FL  FG  G    G    PSGI     G I VVD G + + +F
Sbjct:  643 FGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFT-------FEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK-ILVSDTRNHRIQLFG-PDGVFLNKYGFEGALW-KHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQ-EGRIIVADSRNHRVQMFESNGSFLCKFGAQG-SGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868
The following BLAST results are available for this feature:
BLAST of TCONS_00016519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN418.527e-2538.55E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens... [more]
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