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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000050 ID=TCONS_00000050|Name=TCONS_00000050|organism=Clytia hemisphaerica|type=transcript|length=2212bp
GGACCACCATCTTTGAAATGAAatagtttttataagaaccaactAAATTT
AGCTTCGGCTTCTCTTGTATTCTCGAAATCTTTAACTTAAGTctcgaatg
ttcttaaaatgttcttaaaatactCTGTTTCTTTACTAATTGCTTTGGTG
TTTTCTGGAATACGAGACTAGGattattctaaattttgttCTCAGgttca
aaacaaattatataactattgttcttatttaaaatcttttttatcaaaaa
gcaacTCCTTTTTGGTTGAGACTTCCTTCCGTGTTCACACTTTTCACAAT
CAAAAATAACATACAGTTTCCTCCGTTCCcatccattcagacgtacataT
TACATATAAGCAACATTACATAAAAATTCACCAAACTAAGAAGTGATAAG
CAGAATCACTGTACGTATGTGGAAGCCATGAAAATTGAGTAAATCAGGAG
AACCTAGTTGGCAGACAAGCATTTAACCCGTCTTTTGACTTGTTCATTTC
AACAACATTATACAAACATCTAATCAAGTTTCCTTCGTTGGTAATTGACC
GACCAATTAATGACGATGTGCAGTTATCAACATAccaatttatttttcat
atctatttttcttcaaatctcTTCTATTTACACCGTTCCGCAAATATTCA
CCAAGGTTGTTGGTGGTGAAAACGTCAGGATTGAAGGTATTGATGCAATT
TATGAAAGATCAGTATCCAGTCCAACTGAATGTTCCCTAATATGTCAACG
CCATAAATGTGTTTTCGCCCAAACCGTACCTCAAGAGAAACAGCCAGGTC
TTAAATGTTCGTTATTCAGCAATATTGAAGATGTCTCGGCTGTATTGGTG
CATCATAAAAGCGCCAAGATTGTAAAGTTGAATGAACAGCTTTCTTGCAG
CAACGAAGATCAAGATCCGATTCTTCCACTAGCACCATCACCGCCACTAA
GCAGTTTACCGGAATGTCTTGATTGGTATGAGAATGGATCTGAAGACGAT
GGTGTGTATAACATAACCATCGGTGGAAAATCAACTCCAGTCTATTGTAT
AATGTAAGATCAACAAAGTTTCGGAGCAGGATGGACAGTTTTCCAGCGCC
GTAAAGACGGGTTTGTCGATTTCTACAGATCATGGTTGGACTACAAGGTT
GGATTTGGTAATATCCATGGTAACCACTGGCTTGGTTTGGAGAAGATTCA
TCAATTCACCAAATCCAAACCAACTGTCGAAGTTCTCATCTTTGCTAAAC
GATTTATTGGCGATACAAGATTTGAACATTTTGAagGTTTTTCAGTGGAT
GGCGAAATCACAAAGTACAGAATAACAAGTGGTAGAAAAACAGGTGTAAA
TTACGGGAGAGATTGGACAGCTTTGAATGGGATGAGATTCAGCACATTCG
ATTCAGATAATGATAATTTTGGAGATAGTAATTGTGCCCAAAATTACCCT
TCAGGTTGGTGGATGAACAGCTGTTTTCCAATCAATCTGAATGGTCGTTA
CCGATCGAACGGAGGTGTACCATCATCGTCTCAAGGGATCATTTGGGAAG
AATTTGCAGGTCCTGTTGAATCTCTCAAAGAAACGCTAATCATGATGAGA
AGTAAAAAAGAAGAATCGCTTGAATCGTTTGAATCAATTTCAATCGATTG
ATGAATCGATTGAATCGTTTTCAATCGATGATTGATCATTATTATTACAC
TTGAGTgtatcttaaaatattttattatgtATTTGTTATTTATGTATTTA
TGTAAGCAAGTTCCTTGATGTAAGTGAGCCGTGATTAGATAAGATATCCT
ATCTAGGTCACATGAAATTCATTACCATAGAATTTCAGCGTTTGACCAAT
CAGAAACGTCGCGGATAACAATAGCAATAACTTTTTTTACTTGGAAAAag
cttaaagcactccatctTACCCTTCGAGCTTTACAGAAATTTGTGATTTG
TACTCTTATCTTCACAAACGCACAATGGCAAACTTCTATTGACTAGAGTT
GTTGAAGGTTTTGTTTTACTATATTAGTGTTCCattttcatatcagacac
atatttcatattgggacagtgtctacctattgttatattgtactgatata
aaaaaaaaatttcttttcttctttctgaccaatcttgctatCTTGCCAAT
tcgaaaaagcttgtaaattgaaattgacgagtaagcaaacaatttcactc
ttatttaaaaac Run BLAST on NCBI protein sequence of TCONS_00000050-protein >TCONS_00000050-protein ID=TCONS_00000050-protein|Name=TCONS_00000050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MTMCSYQHTNLFFISIFLQISSIYTVPQIFTKVVGGENVRIEGIDAIYER
SVSSPTECSLICQRHKCVFAQTVPQEKQPGLKCSLFSNIEDVSAVLVHHK
SAKIVKLNEQLSCSNEDQDPILPLAPSPPLSSLPECLDWYENGSEDDGVY
NITIGGKSTPVYCIM Run BLAST on NCBI transcript from alignment at sc0000001:1140426..1144762+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000050 ID=TCONS_00000050|Name=TCONS_00000050|organism=Clytia hemisphaerica|type=transcript|length=4337bp|location=Sequence derived from alignment at sc0000001:1140426..1144762+ (Clytia hemisphaerica)
GGACCACCATCTTTGAAATGAAatagtttttataagaaccaactAAATTT
AGCTTCGGCTTCTCTTGTATTCTCGAAATCTTTAACTTAAGTctcgaatg
ttcttaaaatgttcttaaaatactCTGTTTCTTTACTAATTGCTTTGGTG
TTTTCTGGAATACGAGACTAGGattattctaaattttgttCTCAGgttca
aaacaaattatataactattgttcttatttaaaatcttttttatcaaaaa
gcaacTCCTTTTTGGTTGAGACTTCCTTCCGTGTTCACACTTTTCACAAT
CAAAAATAACATACAGTTTCCTCCGTTCCcatccattcagacgtacataT
TACATATAAGCAACATTACATAAAAATTCACCAAACTAAGAAGTGATAAG
CAGAATCACTGTACGTATGTGGAAGCCATGAAAATTGAGTAAATCAGGAG
AACCTAGTTGGCAGACAAGCATTTAACCCGTCTTTTGACTTGTTCATTTC
AACAACATTATACAAACATCTAATCAAGTTTCCTTCGTTGGTAATTGACC
GACCAATTAATGACGATGTGCAGTTATCAACATAccaatttatttttcat
atctatttttcttcaaatctcTTCTATTTACACCGTTCCGCAAATATTCA
CCAAGGTTGTTGGTGGTGAAAACGTCAGGATTGAAGGTATTGATGCAATT
TATGAAAGATCAGTATCCAGTCCAACTGAATGTTCCCTAATATGTCAACG
CCATAAATGTGTTTTCGCCCAAACCGTACCTCAAGAGAAACAGCCAGGTC
TTAAATGTTCGTTATTCAGCAATATTGAAGATGTCTCGGCTGTATTGGTG
CATCATAAAAGCGCCAAGATTGTAAAGTTGAATGAACAGCTTTCTTGCAG
CAACGAAGATCAAGATCCGATTCTTCCACTAGCACCATCACCGCCACTAA
GCAGTTTACCGGAATGTCTTGATTGGTATGAGAATGGATCTGAAGACGAT
GGTGTGTATAACATAACCATCGGTGGAAAATCAACTCCAGTCTATTGTAT
AATGTAAGATCAACAAAGTTTCGGAGCAGGTAGGTTCCTCTTGAATTTTT
ACCATATATCTACTAATTGGAATCTCAAATATGGATTTGTTTAACTGGTT
CACAGTCCCGATAGAAAGATGACGTCGAAAATCAAGGTTGTTTGGATCAC
AAAAGTCCTACAAACAAACTTCCAATCCTTTCCCTGTCTACAATAACAAC
GATATTAACAAAGAAGGAAACGGAAAAAGCTTTCTCTTTGCTCACAGCTT
GTAGGTACTGTAGAGAGCAGAATTAAACTTCAAAGTCTTATGAATCGCAT
CATTAGAAAAGACTTAACGGGGAAATAAAATTTCCGTGGTTTAAGAAGAT
GGGCGTTTTTTAAGAACAGATATTCGCAGGTTGACACCtactttttaatg
aatttcttttcttcaatatcttaggaaattcatgattttttaattttcaa
tatttctgcGAAGCTAACTTTTACGGTAGAAACCCAAACTGCACCGCGAA
AATTGGTTCCATTAAGTTATCTTTAATGATACCGATTTTTCAGTGTAATT
TGCTCTATTGTTTTGTTTAGGATGGACAGTTTTCCAGCGCCGTAAAGACG
GGTTTGTCGATTTCTACAGATCATGGTTGGACTACAAGGTTGGATTTGGT
AATATCCATGGTAACCACTGGCTTGGTTTGGAGAAGATTCATCAATTCAC
CAAATCCAAACCAACTGTCGAAGTTCTCATCTTTGCTAAACGATTTATTG
GCGATACAAGATTTGAACATTTTGAaggtacagttgacgctctctaattc
gatcttcaaggggattttgaattttcatcgaataagggagcttatcgaat
aagagagcgtcgtttatgagagtttcttgttgacggggactttaaatatc
atcgaataagggagcctatcgaatagtagaacgtcgaattagagagcgtc
gactGTAATGTAAATTGTTTGCTAAATGCGTTTGAATTTTCCACTGGTGG
TAACAAATTTCTTTGCGTTCCTTTGCGGGGTTTTCCATCATGTATtcctt
ctttttgatttttaactcATTTTATTAACAGAAACCCGACAAACTCAACT
AAAGGCCCGTCACTTGCCactaatttttaatttcaaactaACTTTGCTTC
AACTattgttaaaggttttatttttacataagtgtccccgtttcatatca
gacacaatcaggacagtgtcttcctattgttatattatgctgatataagc
aaaaaatgttgttcttttcctctttctgaccaatcttgctccacatccgt
gtcaattcaacgtgaaaaagcttgtaaattaaaattgataactaagcaaa
cgatatcactcttatttaaaaacaaaacccttaactttgtttttaccttt
tttatcaTCAAGGTTTTTCAGTGGATGGCGAAATCACAAAGTACAGAATA
ACAAGTGGTAGAAAAACAGGTGTAAATTACGGGAGAGATTGGACAGCTTT
GAATGGGATGAGATTCAGCACATTCGATTCAGATAATGATAATTTTGGAG
ATAGTAATTGTGCCCAAAATTACCCTTCAGGTAAATTGAAAGACCACTAA
TTCATTTACTGTTATCTACTCTTAGgctccaaataaacgggccccacCGC
TTGTTAACTTTTCGCCCCTTATTTCGCtctaaaaagcctgattttaacct
atatttaccttattttttggTTTTCAGAAGTACGATTTCCAACctcccgg
caattaggtcccctcccgtttatttggaacctaagagtacttcgGTAATA
CTCTCAGCTCAGATGCCTGATAAACGGGGAGAGGGGTTTGAATAATCAGG
GGGGGAGCTAATTTTCGAGGAGGTTGGTAATTGTACACATAAATGCCCCC
AAAATAAGGTAGTTATTAGCAATTTACAGCGCTtgttttaaaaacctttt
ttggttGTGTAAGAGAACGATGGACAGATCAGGCCTTATAAGAAGAACAA
GCACTCGCTATCCTAGGGTCGAGAAACTACTGCGCTTACCCGACTCTGTC
AACTCTTGACGCATAGAGCTTCCGGTGCATAATAACtataaacgcttttt
ttataagaatggtgtaaatccatttcatcatggatattctcaactttttt
gggaaaatcatcctgaaatattcttacagcattcttaggttaggatccta
attcagactagatttaacatttagtacatacgtctcaagcataaaatagc
atttttgtgaaaggagtgagccttacatGCTGGTAaatggcaatttataa
ttgaaaattctctaaaaatgacagacattcttagcttgagtagaaAAATT
CCATTAaaggtgatattcttagcatattcttaatatataatttttggcca
ttttcatcatggagattcttataaaaaagtgtatccttataaaaaaacac
gtgtaCTCTAAGTTAGCTTGATGGGATTTGAAGAGGGTTACAAACATAAG
ACCAACTTTGGAACGTTTATTTTTCATAGGTTGGTGGATGAACAGCTGTT
TTCCAATCAATCTGAATGGTCGTTACCGATCGAACGGAGGTGTACCATCA
TCGTCTCAAGGGATCATTTGGGAAGAATTTGCAGGTCCTGTTGAATCTCT
CAAAGAAACGCTAATCATGATGAGAAGTAAAAAAGAAGAATCGCTTGAAT
CGTTTGAATCAATTTCAATCGATTGATGAATCGATTGAATCGTTTTCAAT
CGATGATTGATCATTATTATTACACTTGAGTgtatcttaaaatattttat
tatgtATTTGTTATTTATGTATTTATGTAAGCAAGTTCCTTGATGTAAGT
GAGCCGTGATTAGATAAGATATCCTATCTAGGTCACATGAAATTCATTAC
CATAGAATTTCAGCGTTTGACCAATCAGAAACGTCGCGGATAACAATAGC
AATAACTTTTTTTACTTGGAAAAagcttaaagcactccatctTACCCTTC
GAGCTTTACAGAAATTTGTGATTTGTACTCTTATCTTCACAAACGCACAA
TGGCAAACTTCTATTGACTAGAGTTGTTGAAGGTTTTGTTTTACTATATT
AGTGTTCCattttcatatcagacacatatttcatattgggacagtgtcta
cctattgttatattgtactgatataaaaaaaaaatttcttttcttctttc
tgaccaatcttgctatCTTGCCAATtcgaaaaagcttgtaaattgaaatt
gacgagtaagcaaacaatttcactcttatttaaaaac Coding sequence (CDS) from alignment at sc0000001:1140426..1144762+ >TCONS_00000050 ID=TCONS_00000050|Name=TCONS_00000050|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0000001:1140426..1144762+ (Clytia hemisphaerica)
ATGACGATGTGCAGTTATCAACATAccaatttatttttcatatctatttt
tcttcaaatctcTTCTATTTACACCGTTCCGCAAATATTCACCAAGGTTG
TTGGTGGTGAAAACGTCAGGATTGAAGGTATTGATGCAATTTATGAAAGA
TCAGTATCCAGTCCAACTGAATGTTCCCTAATATGTCAACGCCATAAATG
TGTTTTCGCCCAAACCGTACCTCAAGAGAAACAGCCAGGTCTTAAATGTT
CGTTATTCAGCAATATTGAAGATGTCTCGGCTGTATTGGTGCATCATAAA
AGCGCCAAGATTGTAAAGTTGAATGAACAGCTTTCTTGCAGCAACGAAGA
TCAAGATCCGATTCTTCCACTAGCACCATCACCGCCACTAAGCAGTTTAC
CGGAATGTCTTGATTGGTATGAGAATGGATCTGAAGACGATGGTGTGTAT
AACATAACCATCGGTGGAAAATCAACTCCAGTCTATTGTATAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000050-exon-sc0000001-1491911889:1140426..1141504 | TCONS_00000050-exon-sc0000001-1491911889:1140426..1141504 | Clytia hemisphaerica | exon |
| TCONS_00000050-exon-sc0000001-1510915933:1140426..1141504 | TCONS_00000050-exon-sc0000001-1510915933:1140426..1141504 | Clytia hemisphaerica | exon |
| TCONS_00000050-exon-sc0000001-1575043694:1140426..1141504 | TCONS_00000050-exon-sc0000001-1575043694:1140426..1141504 | Clytia hemisphaerica | exon |
| TCONS_00000050-exon-sc0000001-1491911889:1142046..1142252 | TCONS_00000050-exon-sc0000001-1491911889:1142046..1142252 | Clytia hemisphaerica | exon |
| TCONS_00000050-exon-sc0000001-1510915933:1142046..1142252 | TCONS_00000050-exon-sc0000001-1510915933:1142046..1142252 | Clytia hemisphaerica | exon |
| TCONS_00000050-exon-sc0000001-1575043694:1142046..1142252 | TCONS_00000050-exon-sc0000001-1575043694:1142046..1142252 | Clytia hemisphaerica | exon |
| TCONS_00000050-exon-sc0000001-1491911889:1142888..1143055 | TCONS_00000050-exon-sc0000001-1491911889:1142888..1143055 | Clytia hemisphaerica | exon |
| TCONS_00000050-exon-sc0000001-1510915933:1142888..1143055 | TCONS_00000050-exon-sc0000001-1510915933:1142888..1143055 | Clytia hemisphaerica | exon |
| TCONS_00000050-exon-sc0000001-1575043694:1142888..1143055 | TCONS_00000050-exon-sc0000001-1575043694:1142888..1143055 | Clytia hemisphaerica | exon |
| TCONS_00000050-exon-sc0000001-1491911889:1144005..1144762 | TCONS_00000050-exon-sc0000001-1491911889:1144005..1144762 | Clytia hemisphaerica | exon |
| TCONS_00000050-exon-sc0000001-1510915933:1144005..1144762 | TCONS_00000050-exon-sc0000001-1510915933:1144005..1144762 | Clytia hemisphaerica | exon |
| TCONS_00000050-exon-sc0000001-1575043694:1144005..1144762 | TCONS_00000050-exon-sc0000001-1575043694:1144005..1144762 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1140426..1144762 + |
Blast
BLAST of TCONS_00000050 vs. Swiss-Prot (Human)
Match: ANGL6 (Angiopoietin-related protein 6 OS=Homo sapiens GN=ANGPTL6 PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.710e-29 Identity = 75/217 (34.56%), Postives = 116/217 (53.46%), Query Frame = 2
Query: 962 ECLDWYENGSEDDGVYNITIGGKSTPVYCIM*DQQSFGAGWTVFQRRKDGFVDFYRSWLDYKVGFGNIHGNHWLGLEKIHQFTKSKPTVEVLIFAKRFIGDTRFEHFEGFSVDGEITKYRITSGRKTGVNYGRDWTALNGMRXXXXXXXXXXXXXXXCAQNYPSGWWMNSCFPINLNGRYRSNGGVPSSSQ-GIIWEEFAGPVESLKETLIMMRSKK 1609
+C + + G E GVY + +G V+C +QQ G GWTV QRR+DG V+F+ +W YK GFG G +WLGLE ++Q T S+ E+L+ + + G H++GFS++ E YR+ G+ G + G D + + + + + + NCA GWW ++C NLNG + G S Q G+ W EF G SL++ +++R K
Sbjct: 259 DCAEARQAGHEQSGVYELRVGRHVVSVWC---EQQLEGGGWTVIQRRQDGSVNFFTTWQHYKAGFGRPDGEYWLGLEPVYQLT-SRGDHELLVLLEDWGGRGARAHYDGFSLEPESDHYRLRLGQYHG-DAG-DSLSWHNDKPFSTVDRDRDSYSGNCALYQRGGWWYHACAHSNLNGVWHHGGHYRSRYQDGVYWAEFRGGAYSLRKAAMLIRPLK 469
The following BLAST results are available for this feature:
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