XLOC_040149 (gene) - C. hemisphaerica

Overview
NameXLOC_040149
Unique NameXLOC_040149
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_407:126818..133111+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040149 ID=XLOC_040149|Name=XLOC_040149|organism=Clytia hemisphaerica|type=gene|length=6294bp|location=Sequence derived from alignment at scaffold_407:126818..133111+ (Clytia hemisphaerica)
GCAAAACTTCCtccaaagaatttttcaaaagattttttttgttgagaaat
ttATCATGAGGAAAATATGTTTAGTTTagataaaaaagaagaattattCA
AGGTTCGAATCCACGTGGAAGCCACAGGCGACCACATCACgctcaagaaa
atcaaaaatgatctTAAGATTAGTCAACTGAAGGAAAAGATCGAAGGATT
TGTTGGCATCCCAAGGTACGTCACCGTCAAATTCAACTTTATTTTATTGT
AAGAACTTTAAACTCAATTTAACACAGAAAATTAATCTAAAATTGATGAC
AATCAgctttaaaaaacaaaagaaaataaacacGAAATAAACACTATAAA
TCTTTTAATCCTATAGGGTAAAATTAGTCcagatgaaaagtgaaaaaaat
tgtaagcAATAGAAAGAGTTACTTCAGAGGGTAATTTTGTTTCCTGCATT
TTGAGAAGATTGAGTTGATTTGACCAAACCACATGTGGTGGAAAATTTCG
TCTCCGAGATCTCTCTCCCAGAGTTTGATGTGAGCTTTAGACTGGAGTAT
TGGAGATGACGGGATATCGTCATCAATGATAATTTCAATCAAATTCTCTG
TTCGAACTGTTGTTACATTCATTCTAAGAGGACGGTTTTTTctttcgatg
aaaatttgaacattATTTTGTGAATTAACTACTTTATCCTTGATCGTATT
GGTTGAAATTCTGTCCAATCCGTTTTCTATTTTATAATGTTGTTTCCCTT
CAAATACTATCACATAAGAACTCGGTTTGAGAACTTTCTCCAGGAAGTCA
AATAGATGATAGTCGTTCCATTGCCAGGACGGATCATCCAGTAAACCGTT
AGTTTTATACTGAACAACTTTTGTCCAAAAATACATTTTCAAATCGTCAG
AGAATATACAAGGATATTTTCTACGAGCACCAAATTCTTTAAAACGATCG
TAATGAGCATTCTTGAGAACACCCATTAAATCTTTATGCATGTGTTGACT
CAGCGCTATTTCCTTTAACGAATCGATATGGAAATAACGATGTCTTGGCA
TCCACCTCTTGACAACCAAACACATCGTATCAATTGTGCCACAAATAAAT
ACCACATTATAATTTTGTTCATTCTCCACGGACTGCAATTTCATTGATAA
TAGCTCTTTTTCTGGCCTGCCAAACCATGAAGCCCAATAGAACATGACAT
AAATCAAAGTATGTTGTATTTTCTCTTCGTTGCCAACTTCTGAAAGTGTT
GACAAAAACTGCATTATATTATTAGTTTCCATAGTTTGGCTGGTAGTTAT
TATGTCATCAAAAGCATCCAGAAAGTTCGATTCTGTCAATTGAATCAGCG
AATTCTTTTTCACTGAGTACATCCGGACATCAGTACATTTTTCAAGTAAA
AGTANCAACTGAATCAGCGAATTCTTTTTCACTGAGTACATCCAGACATT
AGTACATTTTTCAAGTAAAAGCGATCTTGTTAACACTGTTAGTTGGTCAA
TCAAAGTGTTTGTGTATCTTCTAAAGTCGTGATTTCGATAAGGTTCTGGT
CGATTTTCAATATCAGGAAAAAATGTGACCTTCTTTCTTTTGATGCAAGG
TGCAGCAATATCATTCGCCCTGCCAGCTGCAGTTATATTGGTGTCCATCA
AATGGAATAAAAGAATCCATATTTTGACTCCCATTAGATCCCAAAGATCG
CATTAAAGTGACTCTTGAACAAATTGAAACGAAACGAAAAATCTCATAAA
CTGCTTAACTTCCAAAcaaaaatagcttcaaaaaagCTATAAAAGGGAAA
TGACGCTACTTCTGTTGTAAAATCCAAAGAAACCTTTTGAATCGTTTGCA
TGTTGTACGTTTCTGCTTCTTGGTTTAAAAGACCTCCTGGTTATAAAAAA
TGTCAATAAAATATGAAATCCATTCTTCTTCTTCCCCATTGTTTTACATC
TCCTACTGATGAAATAGCTTCTCTTTTAAATATTTAAGTGGAttaagttg
tttttttcaataagTAGCAATTTGAAATGTTATTTGACATATGCTATGCA
AAAGAATGAATCACTATAATTTTTTCCCAATAGGAGAGATGAGCAGCCCA
GTTAGAGTAGCTAGGGGAaacagtggcgtggtggcagggggggccaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattttt
caggcgcccatatcgaaagattgacaaatgaaaaaacaaaaatggcgccc
ctcatcacctcaaaaactcaaaattttctggctcgcttcgctcgtacact
cccttttttgtgttcataatgtaatgagcgtatagagaggggcgccaaaa
acaaaaaatctttataaagggcgccatatttgccttggccaccccagaga
aattttcccaccacgccactgagGGGAAATGGTATAACTTATTAATATGT
ATGTATGTTTAAAACATAACTAAATGTAACATaacattaaaggttttatt
tttaagtgTTCCCTTCTcttatcagacacatatttcatatcaggacagtg
tctgcctattgttatattatgctgatataagcaaaaaatatttttctttt
tcctctttatgACCAACCTTGCTCCACATCATCCGTATCAatctaatgtg
aaaaagcttgttacaaattaaaaatgatttcgttgttataattatttcaa
acgagaaagtaattttttggaaatattatataaaatctaatttttacGAC
TTGTCGATTCTAGTAATGTTTCAAAGTTGTGAATAATTCTCTTTCCTTTC
CAGTTATTTGTTACAATTGTTCTATCTGGACGAATGTGCTTTAGTGGATG
AAAAATCATTGAGTTATTTTCACATCTTACCTGATGCCAGAATCAAAGCT
CGCGTGTGGAAAACGAATCGTAAGCTGGTGGCCGCTGCACGATATGGATC
CTGGGAAGGTATGAGTTTAAACCCTAAAGGGCTAGAGGGTTTGTAAGGTT
GAAAAAATCTCGTTATTTTTCTTGATATCTTGCTTTGTCtcttaaagcct
taaaatctcatgttgatttttttttatttcatacagtagagaacaaacta
taaaggTAAAAGATTAATTCTAAAAACTTGGTTCGTTTTCTGTGTTACAA
TCAAAAGATAACAATTCATCGTAAAAAGAATGTTTAATTGTTAATCTTAG
GTTCCAGATAGACGGGGGTTTCGAATAAACGGtaggtttgaaaaattttc
aaaattttaataaacggggtggGACCTAGTTGCCGGCGGGGTTGGAAGTT
GTAATTACGAAAACCCAAAACTACTGTAAATAAAGGCTAATATCAGGCGG
AGGgggggtttgaaaattttcgaaaaattaacaagcgggggggcgtttat
ttggaacctatgAGTACCCACCTTGCAATAGGAAATCGTTTTTACGTTAC
AATCCTTTCTGGCAGAGGCACTGTCAACTAGCTATCTATTGGTTTAGTTA
CACGcattaatatttcttttgtagATGTATTGGCTGAGCTGTATCTGCCT
gcaacaaaagaagaaatttccaAAGCTTCGCTTCACACCAGTCATGATTT
AGATAGGCCCTTAACTGCTTTGTTTATATCATGTTTCCACGGCAATGATG
CTGTCGTAGAGAAGTTGTTGCAACAAGGTGTGGTGAACGAACGGAAACCA
TTGTTATCAGGGCGTCATGCTGTACAAGTGGCGGCAACACGCCACCATGC
TAGATGTGTCGAGCTGTTACGTAAGTTTAGATTGTTTAGAGGTTGCTCAT
TGTAAGAAttatctacacgctttttttcataagaatggtGATCTTTTTAT
TTCAACATAGGTATTCTTAACCTTTTCGGGAAAAtgatcctgaaatattc
ttttggtattcttaggtttgtatccaaacccagctaaaatctagcatgta
atacatacctcaagcaaaaattttgcatttttatgGAACTTTCGCTGAGC
ATTGCTAGGAAATAAATTTGCGATCTATGGTAAGGAgctcaaaaaatggc
attttcagGTTCAATTGCCAAATTCCGTGAAGgtggtattcttagcatat
tcttaacttttttcgccAGTTTCATCATAAAtactcttataaagtatatt
cttataaaaaaaagcgtgtacggCTTAACGTCAACAGTGTGGAAAAACAG
ATCACTTAGTAAGACTTAATGACTTTCCGTGGCTAAGAATAGAAATGAGA
AAACCTTTCAAACaatattgaaatttctttaaagaattttaGCAAGTCTA
AAAACAATATGTTGCAAAATCCCTTACAGTTCGTCTACATTCTGAttctt
cattaattttttcagtcTGACCATAAGTTGACTGGCTGCAAAATGACTGC
TTCATAAGAATTATTTCCAATTTTAGTATTCCAACACACTGGTTGTCAAT
ccaatgataaaaaaatcacTTCACGTTATTACGGAATCCCTGAGTGACCA
CAACGACAACAATTTCACGCAATAATATAAATCACtcacaacaatatttc
aaactttcacaacaatatcaaatttCTTACAACAGAATATCGAAATTCCc
acaacaatatcaatattCTCACAACAATATAGAAATTCTTACAACAATAT
GAAAAAGCCGGAAAAAATCTAAAGTGCTCTCTCCtcagtgatttttttaa
ttagtactagtaatcgtatggtttggagtgcaattaacgattaatcacga
gtaacaaaggagaaaatagtaatttgcacgagtccgaaggacgagtgNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtgcaaa
aagtggtaatagtgcaattaacgattaattgcactcctctaaaccaatca
gattcgagtaattttgcacggctgacgattaatGATGAAACATCTTCCGT
AAGGACAGGGCCTTAAGTTACAACACATTTATTACAATAAAATTACAGAG
AGTCTGGTAATACTCGCCATAGGGTTCTGTGGAGAAATCCGCGATGGCAA
CTACTGCATGAAACGTGGGGAGGAGACTGCACCACAGTCACCTTATTTGC
AAGTATTTTCTATTCGATCTTAGAAGCTGGTCCATATACCGTCCATAAAG
CTTATCGTACTTATGGTTTCTCTGGAAATTGGAAACTTTTGCAGCAGTAC
ACCAGATGCTTACCAACTCTATACAATAGTTAACTTTTTTCCTATCGTTT
ATAGGGGACGACCACCAGACTCTCTGTAATTTTATTGTAATCATGCGACC
CATTCAATCACCACGTGAAATATTTGGCTACATGTAAACACCTCGTAGTC
CTATATGTGTAGAAATTTAAAGCCCTATTATCATGGAAGATTCTTCATCG
CCAACGAGACGTAAAAAAATCACTGCGAGAGCACTTTAGATTTTTTCTGA
GTTTTCATAttattgtcaaaattttgataatgttGTGAGAATTTGGATAT
TGTTGTGAGAATGTTTATATTGTTGTGAAAATATTGATATTGCTGTGAGA
ActttgatattgttgtgagagTTTGAAATACCGTTGAGAGAGAAAATGTT
GTCGTTGTGGCCGCTCAGGGCTTCCGTACGTtatattcattttcaattcT
ATTTTACAGTGAGACGTAAATTCCGACCATACGAGTGGAACCACGAAAGA
AATTCTCTCATGAATTGGGAGTTACAAGACCGCATTAAAGCCACTCTCGA
ACGAATCGAAACGAAACGAAAAATCTCCAAAACACAACATTATACGCGTT
TAACAGAGTCACAGAAATACGATtcttttttatccacgtggtacTGTGGT
GAATATGGAAAAATTTATTTGTGTGTTATTTTGACAGGAGAAACGAATAC
TAAGACAAACCCGAATccaatcaaatataataaaCCGGTCTTTAGACCTT
AAAAGTtagttattttgaaatatattcgAATTACCAGCAAAAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064036TCONS_00064036Clytia hemisphaericatranscript
TCONS_00064037TCONS_00064037Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00064037-proteinTCONS_00064037-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:126818..133111 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12	0.1	0.28	0.51	1.03	0.87	0.41	1.06	0.37	0.57	1.14	0.71	0.46	0.56	0.03	0.31	0.26	0.49	0.05	0.17	0.25	0.41	1.51	2.22	2.17	2.42	1.38	1.37	0.06	0.12