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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001404 ID=TCONS_00001404|Name=TCONS_00001404|organism=Clytia hemisphaerica|type=transcript|length=1641bpRun BLAST on NCBI transcript from alignment at sc0000010:1069553..1091079+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001404 ID=TCONS_00001404|Name=TCONS_00001404|organism=Clytia hemisphaerica|type=transcript|length=21527bp|location=Sequence derived from alignment at sc0000010:1069553..1091079+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001404 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 185.267 bits (469), Expect = 6.421e-49 Identity = 134/379 (35.36%), Postives = 163/379 (43.01%), Query Frame = 2
Query: 593 LDGDWSQWGPWDVCRRPCFHGDQFRRRTCTNPAPQKGGRGCPESSGHHRMCNPNSCKDLDLHSSCKREQGECLDESGRGRIQTMGKKLNHGKEKDCLEKCMDQLYYGSGCTFIKSTGYCYTHTKRVAGGNGDDGAFCWVFKKCKINGKWSKWGAWGECSVSCGPGGKQTRRRTCNNPIPNAGGLDCPKSDNDSQT---RNC-------------------------KTR--XNPIPNAGGLDCPKSDNDSQTRNCKTRICPTHGKWSEWGSWGKCSASCGAGQKTRTRTCTNPAPRHGGRECGDSNTHTLNCNLKSCPIVVHGKWSEWGSWGKCSASCGSGQKTRTRTCTNPAPQNGGRDCTDIKNDIENQKCNTNTCP 1639
+ G +SQW W C C G Q R R C P P GG+ C S R C C +D S EC GRG N + + C + H R GN + C + + C ++G WS W WG CS SCG G QTR R CNNP P GG C ++ Q RNC +TR +P+P GG C SD Q+ C + CPTHG WS W WG CS +C GQ R RTC NP P +GGR CG ++ CN CP V G W W SW +CSASCG G+KTR R C +P P GGR C + + +CN CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP-VDGSWSEWSLWEECTRSCGRG---------NQTRTRTCNNPSVQ-------------------HGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCG-KGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSD--VQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP--VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPG--DTTQVTRCNVQACP 4869 HSP 2 Score: 159.073 bits (401), Expect = 2.007e-40 Identity = 86/215 (40.00%), Postives = 108/215 (50.23%), Query Frame = 2
Query: 995 AFCWVFKKCKINGKWSKWGAWGECSVSCGPGGKQTRRRTCNNPIPNAGGLDCPKSDNDSQTRNCKTRXNPIPNAGGLDCPKSDNDSQTRNCKTRICPTHGKWSEWGSWGKCSASCGAGQKTRTRTCTNPAPRHGGRECGDSNTHTLNCNLKSCPIVVHGKWSEWGSWGKCSASCGSGQKTRTRTCTNPAPQNGGRDCTDIKNDIENQKCNTNTCP 1639
V +++G +S+W AW CSV+CG G Q R R CN P+P GG C SD + RNC+ + CP G WSEW W +C+ SCG G +TRTRTC NP+ +HGGR C + + CN++ CP VHG WS W WG CS SCG G +TR R C NP P GG C + + Q CN CP
Sbjct: 4518 VLVRVPVIVQVHGGFSQWSAWRACSVTCG-KGIQKRSRLCNQPLPANGGKPCQGSD-----------------------------LEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP--VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQM--QVCNERNCP 4698 The following BLAST results are available for this feature:
BLAST of TCONS_00001404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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