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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015270 ID=TCONS_00015270|Name=TCONS_00015270|organism=Clytia hemisphaerica|type=transcript|length=5457bpRun BLAST on NCBI transcript from alignment at sc0000208:320574..344570+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015270 ID=TCONS_00015270|Name=TCONS_00015270|organism=Clytia hemisphaerica|type=transcript|length=23997bp|location=Sequence derived from alignment at sc0000208:320574..344570+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015270 vs. Swiss-Prot (Human)
Match: LRP1 (Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 7.943e-21 Identity = 61/118 (51.69%), Postives = 73/118 (61.86%), Query Frame = 2
Query: 176 CGYFEFKCANNGRCIQGSWRCDGQDDCGDWSDE------RNCCRSYQFECVNNGRCISSYWRXXXXXXXXXNSDERNC----CGRDEFQCVSNARCIEKSWVCDGEIDCRDHSDEQNC 499
CG EF+C ++GRCI W+CDG+DDCGD SDE C YQF C NN RC+ W+CD D DC DNSDE +C C EF C +N RCI W CDG+ DC D SDE++C
Sbjct: 3494 CGVDEFRCKDSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNN-RCVPGRWQCDYDNDCGDNSDEESCTPRPCSESEFSC-ANGRCIAGRWKCDGDHDCADGSDEKDC 3609 HSP 2 Score: 92.8189 bits (229), Expect = 1.675e-18 Identity = 62/128 (48.44%), Postives = 80/128 (62.50%), Query Frame = 2
Query: 176 CGYFEFKCANNGRCIQGSWRCDGQDDCGDWSDE--RNC----------CRSYQFECVNNGRCISSYWRXXXXXXXXXNSDERNCCGRD-------EFQCVSNARCIEKSWVCDGEIDCRDHSDEQNCQ 502
C +FKC N+GRCI W CDG +DCGD+SDE NC C + +F+C +G CI WRCDGD DC D+SDE++C G +F C +ARCI K+WVCDG+ DC D+SDE+NC+
Sbjct: 1015 CSSTQFKC-NSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGVTHVCDPSVKFGCKDSARCISKAWVCDGDNDCEDNSDEENCE 1141 HSP 3 Score: 92.8189 bits (229), Expect = 1.776e-18 Identity = 59/110 (53.64%), Postives = 67/110 (60.91%), Query Frame = 2
Query: 188 EFKCANNGRCIQGSWRCDGQDDCGDWSDERNC----CRSYQFECVNNGRCISSYWRXXXXXXXXXNSDE-RNC----CGRDEFQCVSNARCIEKSWVCDGEIDCRDHSDE 490
+FKC N RCI G +RC+GQD+CGD DER+C C QF+C RCI W CD D DC D SDE NC CG DEF+C + RCI W CDGE DC D SDE
Sbjct: 3417 QFKCTNTNRCIPGIFRCNGQDNCGDGEDERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPANCTQMTCGVDEFRCKDSGRCIPARWKCDGEDDCGDGSDE 3526 HSP 4 Score: 87.8113 bits (216), Expect = 5.897e-17 Identity = 62/120 (51.67%), Postives = 73/120 (60.83%), Query Frame = 2
Query: 188 EFKCANNGRCIQGSWRCDGQDDCGDWSDERNC---CRSYQFECVNNGRCISSYWRXXXXXXXXXNSDE--RNC----------CGRDEFQCVSNARCIEKSWVCDGEIDCRDHSDEQNCQ 502
+F C NNGRCI +WRCD +DCGD SDE C C S QF+C N+GRCI +W CDGD DC D SDE NC C DEFQC + CI W CDG+ DC D SDE++C+
Sbjct: 981 QFTC-NNGRCININWRCDNDNDCGDNSDEAGCSHSCSSTQFKC-NSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 1098 HSP 5 Score: 87.8113 bits (216), Expect = 6.255e-17 Identity = 57/117 (48.72%), Postives = 73/117 (62.39%), Query Frame = 2
Query: 170 KGCGYFEFKCANNGRCIQGSWRCDGQDDCGDWSDERNC----CRSYQFECVNNGRCISSYWRXXXXXXXXXNSDERNC---CGRDEFQCVSNARCIEKSWVCDGEIDCRDHSDEQNC 499
+ C ++F+C NN RC+ G W+CD +DCGD SDE +C C +F C N GRCI+ W+CDGD DC D SDE++C C D+FQC S CI W CD + DC D SDE+ C
Sbjct: 3534 RTCEPYQFRCKNN-RCVPGRWQCDYDNDCGDNSDEESCTPRPCSESEFSCAN-GRCIAGRWKCDGDHDCADGSDEKDCTPRCDMDQFQCKS-GHCIPLRWRCDADADCMDGSDEEAC 3647 The following BLAST results are available for this feature:
BLAST of TCONS_00015270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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