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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015239 ID=TCONS_00015239|Name=TCONS_00015239|organism=Clytia hemisphaerica|type=transcript|length=2075bp
ATTTTGAAATCATGAAGCCGCAGCCTCTCAGTTCGCAGCAAGCACAATGC
ATGGCGCAGCTGGTTGGACCAAAGCCATTCATCACTTGCATGATCAATGG
TAAACAATTTCAATCGTTATTTGACACAGGAAGCATGGTATCTGTGGTTT
CTTCAAATTGGTTGCTGACTGAATTTCCAGATACACCAATTGCTCCTCTG
AAATCGAATTGCTTCACGGTGAAAGTTGCAAATGACACTCCTCTGGCGCT
TGCAGGGGTGGCCCTACTGAAATTTTCATTACCATCAAACCGTGTGGAAA
TTACATGTCCATTTTTGGTTACTGATACAGCCCTACCAAACTGTATTGTT
GGTACCAACCTCATACGTTGCTTGTATCAACACCAATCAAAGGATCATTT
CTCACACGACTTAGCTGGTGCAGTAGGGATGATGCTGGAAGGCAAGGCAG
TGATCAATGCCATGGAAGgcgaagtgatagagatgaatGTGTTTTGCGGT
GAATCAATTGTTGTGGAACCGGGAGAATGTCGAAAAGTTCTTTGTTCAGT
TCCTGACATCCATAAAGAAAGGGGAACTCCCATGTTGTTCGAACCCATAA
CAAGTGAAAATTCTTTGCTTGAGTACATGGAATGCTTGGTATCCATTAAG
AAAGATTTTGAAGTCCTAGCCATGAACTGCACAGATCGTCCGATTACAAT
TCATCCAAAGGAAATCGTNGGCTCTGTTCAATTTCTGTTAACCTTCCCAG
TGTGAATATGGTCGATGTTGAAGCGGGTAAAGGAAAATGGCAACCTGCAG
TAAATCTTGACCACCTTGATCAAGAAAAACAAGAGGCAGTGGGAAAGGTA
CTGTATGAATATTGCGACGTCTTCTCAAAGGAAAAATCAGACATAGGGGA
GATGAAGGACTTCTACATGGACATTCAACTCACAGACAGTAAACCAATTC
ATGTTCCTTACAGACGCATCCCAAAACAAATGTACAAAACCGTGAAAGAC
TACATGGATGACTTGATAGCAAATGGCTGGATTAAAACATCTGAATCCCC
ATACAGTAGTCCTATTGTGTGCGCTAAAAAGAAAGATGGTTCGCTGCGAC
TGTGTATCGACTACCGTGCATTAAACAATGTCACCATACCTGATAGAATG
CCAATTCCACGAATTGATGACATCCTGGACAATCTTGGcggtcaaaaata
tttcagcaCACTTGACTTGACAAAAGCTTACCATCAGGGTTTCATGGAAG
AATCAGCTCGTAAATACACAGCATTTTCCACGCCATGGGGATTGTATGAG
TGGTTGAGAATTCCTATGGGTCTGAAGAATGCACCCCCAAAGTTCCAGAG
GAAGATCAGCTCAAATCTAGAAGAAGCATATGAAACGTCTGGATTACCGT
ACCTAGATGATATCATCAGTTATGGCAGCAATTTTGAAGATGCACTAGCC
AACCTAACAATACTTCTCCAGAAATGTAGAAAGCACTCAATGAAACTGAA
TCCAGCCAAATGTGAGGTGTTCAAATCAGAAATAAAGTACTTGGGAAGAT
TAATCAATGCtgatggtcacaaaatggatcCAGCATCCAGTGAGGTAATC
AATAAACTGAAATGCCCGCCAACAAACATCGGAGGATTACGCAGCCTCCT
GGGATTCATCAATTGCTACCGGTCATCTATCAAGAACTTTTCCAGACGTG
TGAAGCCACTGTATGATTTGCTGGTAACTGAGACACCTGATAAGAAACAA
AGCAAATCTTCAAAGACACCAATCAAATGGAACCATCAACATCAAGAAAT
CCTAGAAGAAATGCTTGAGCATCTAAAATCACCTGCAGTTATGGCTTTCC
CCGACTTTGATAAAGATTTTGTGCTACACTGTGATGCGTGTGAGAAAGGG
CTTGGAGCAGTGTTATACCAAGAAAATAATGATGGGAAACTCAAAGTCAT
TTGCTATGGTTCGCGCACTTTGTCTCCAGCTGAAACCAACTACCACATCC
ATTCTGGGAAATTAGAATTCTTATCATTGAAATGGTCTGTCTGTGATCGA
TTCAAACACTACCTCTATTATGCNN Run BLAST on NCBI protein sequence of TCONS_00015239-protein >TCONS_00015239-protein ID=TCONS_00015239-protein|Name=TCONS_00015239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MVDVEAGKGKWQPAVNLDHLDQEKQEAVGKVLYEYCDVFSKEKSDIGEMK
DFYMDIQLTDSKPIHVPYRRIPKQMYKTVKDYMDDLIANGWIKTSESPYS
SPIVCAKKKDGSLRLCIDYRALNNVTIPDRMPIPRIDDILDNLGGQKYFS
TLDLTKAYHQGFMEESARKYTAFSTPWGLYEWLRIPMGLKNAPPKFQRKI
SSNLEEAYETSGLPYLDDIISYGSNFEDALANLTILLQKCRKHSMKLNPA
KCEVFKSEIKYLGRLINADGHKMDPASSEVINKLKCPPTNIGGLRSLLGF
INCYRSSIKNFSRRVKPLYDLLVTETPDKKQSKSSKTPIKWNHQHQEILE
EMLEHLKSPAVMAFPDFDKDFVLHCDACEKGLGAVLYQENNDGKLKVICY
GSRTLSPAETNYHIHSGKLEFLSLKWSVCDRFKHYLYYX Run BLAST on NCBI transcript from alignment at sc0000205:66595..68669 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015239 ID=TCONS_00015239|Name=TCONS_00015239|organism=Clytia hemisphaerica|type=transcript|length=2075bp|location=Sequence derived from alignment at sc0000205:66595..68669 (Clytia hemisphaerica)
NNGCATAATAGAGGTAGTGTTTGAATCGATCACAGACAGACCATTTCAAT
GATAAGAATTCTAATTTCCCAGAATGGATGTGGTAGTTGGTTTCAGCTGG
AGACAAAGTGCGCGAACCATAGCAAATGACTTTGAGTTTCCCATCATTAT
TTTCTTGGTATAACACTGCTCCAAGCCCTTTCTCACACGCATCACAGTGT
AGCACAAAATCTTTATCAAAGTCGGGGAAAGCCATAACTGCAGGTGATTT
TAGATGCTCAAGCATTTCTTCTAGGATTTCTTGATGTTGATGGTTCCATT
TGATTGGTGTCTTTGAAGATTTGCTTTGTTTCTTATCAGGTGTCTCAGTT
ACCAGCAAATCATACAGTGGCTTCACACGTCTGGAAAAGTTCTTGATAGA
TGACCGGTAGCAATTGATGAATCCCAGGAGGCTGCGTAATCCTCCGATGT
TTGTTGGCGGGCATTTCAGTTTATTGATTACCTCACTGGATGCTGgatcc
attttgtgaccatcaGCATTGATTAATCTTCCCAAGTACTTTATTTCTGA
TTTGAACACCTCACATTTGGCTGGATTCAGTTTCATTGAGTGCTTTCTAC
ATTTCTGGAGAAGTATTGTTAGGTTGGCTAGTGCATCTTCAAAATTGCTG
CCATAACTGATGATATCATCTAGGTACGGTAATCCAGACGTTTCATATGC
TTCTTCTAGATTTGAGCTGATCTTCCTCTGGAACTTTGGGGGTGCATTCT
TCAGACCCATAGGAATTCTCAACCACTCATACAATCCCCATGGCGTGGAA
AATGCTGTGTATTTACGAGCTGATTCTTCCATGAAACCCTGATGGTAAGC
TTTTGTCAAGTCAAGTGtgctgaaatatttttgaccgCCAAGATTGTCCA
GGATGTCATCAATTCGTGGAATTGGCATTCTATCAGGTATGGTGACATTG
TTTAATGCACGGTAGTCGATACACAGTCGCAGCGAACCATCTTTCTTTTT
AGCGCACACAATAGGACTACTGTATGGGGATTCAGATGTTTTAATCCAGC
CATTTGCTATCAAGTCATCCATGTAGTCTTTCACGGTTTTGTACATTTGT
TTTGGGATGCGTCTGTAAGGAACATGAATTGGTTTACTGTCTGTGAGTTG
AATGTCCATGTAGAAGTCCTTCATCTCCCCTATGTCTGATTTTTCCTTTG
AGAAGACGTCGCAATATTCATACAGTACCTTTCCCACTGCCTCTTGTTTT
TCTTGATCAAGGTGGTCAAGATTTACTGCAGGTTGCCATTTTCCTTTACC
CGCTTCAACATCGACCATATTCACACTGGGAAGGTTAACAGAAATTGAAC
AGAGCCNACGATTTCCTTTGGATGAATTGTAATCGGACGATCTGTGCAGT
TCATGGCTAGGACTTCAAAATCTTTCTTAATGGATACCAAGCATTCCATG
TACTCAAGCAAAGAATTTTCACTTGTTATGGGTTCGAACAACATGGGAGT
TCCCCTTTCTTTATGGATGTCAGGAACTGAACAAAGAACTTTTCGACATT
CTCCCGGTTCCACAACAATTGATTCACCGCAAAACACattcatctctatc
acttcgcCTTCCATGGCATTGATCACTGCCTTGCCTTCCAGCATCATCCC
TACTGCACCAGCTAAGTCGTGTGAGAAATGATCCTTTGATTGGTGTTGAT
ACAAGCAACGTATGAGGTTGGTACCAACAATACAGTTTGGTAGGGCTGTA
TCAGTAACCAAAAATGGACATGTAATTTCCACACGGTTTGATGGTAATGA
AAATTTCAGTAGGGCCACCCCTGCAAGCGCCAGAGGAGTGTCATTTGCAA
CTTTCACCGTGAAGCAATTCGATTTCAGAGGAGCAATTGGTGTATCTGGA
AATTCAGTCAGCAACCAATTTGAAGAAACCACAGATACCATGCTTCCTGT
GTCAAATAACGATTGAAATTGTTTACCATTGATCATGCAAGTGATGAATG
GCTTTGGTCCAACCAGCTGCGCCATGCATTGTGCTTGCTGCGAACTGAGA
GGCTGCGGCTTCATGATTTCAAAAT Coding sequence (CDS) from alignment at sc0000205:66595..68669 >TCONS_00015239 ID=TCONS_00015239|Name=TCONS_00015239|organism=Clytia hemisphaerica|type=CDS|length=1317bp|location=Sequence derived from alignment at sc0000205:66595..68669 (Clytia hemisphaerica)
NGCATAATAGAGGTAGTGTTTGAATCGATCACAGACAGACCATTTCAATG
ATAAGAATTCTAATTTCCCAGAATGGATGTGGTAGTTGGTTTCAGCTGGA
GACAAAGTGCGCGAACCATAGCAAATGACTTTGAGTTTCCCATCATTATT
TTCTTGGTATAACACTGCTCCAAGCCCTTTCTCACACGCATCACAGTGTA
GCACAAAATCTTTATCAAAGTCGGGGAAAGCCATAACTGCAGGTGATTTT
AGATGCTCAAGCATTTCTTCTAGGATTTCTTGATGTTGATGGTTCCATTT
GATTGGTGTCTTTGAAGATTTGCTTTGTTTCTTATCAGGTGTCTCAGTTA
CCAGCAAATCATACAGTGGCTTCACACGTCTGGAAAAGTTCTTGATAGAT
GACCGGTAGCAATTGATGAATCCCAGGAGGCTGCGTAATCCTCCGATGTT
TGTTGGCGGGCATTTCAGTTTATTGATTACCTCACTGGATGCTGgatcca
ttttgtgaccatcaGCATTGATTAATCTTCCCAAGTACTTTATTTCTGAT
TTGAACACCTCACATTTGGCTGGATTCAGTTTCATTGAGTGCTTTCTACA
TTTCTGGAGAAGTATTGTTAGGTTGGCTAGTGCATCTTCAAAATTGCTGC
CATAACTGATGATATCATCTAGGTACGGTAATCCAGACGTTTCATATGCT
TCTTCTAGATTTGAGCTGATCTTCCTCTGGAACTTTGGGGGTGCATTCTT
CAGACCCATAGGAATTCTCAACCACTCATACAATCCCCATGGCGTGGAAA
ATGCTGTGTATTTACGAGCTGATTCTTCCATGAAACCCTGATGGTAAGCT
TTTGTCAAGTCAAGTGtgctgaaatatttttgaccgCCAAGATTGTCCAG
GATGTCATCAATTCGTGGAATTGGCATTCTATCAGGTATGGTGACATTGT
TTAATGCACGGTAGTCGATACACAGTCGCAGCGAACCATCTTTCTTTTTA
GCGCACACAATAGGACTACTGTATGGGGATTCAGATGTTTTAATCCAGCC
ATTTGCTATCAAGTCATCCATGTAGTCTTTCACGGTTTTGTACATTTGTT
TTGGGATGCGTCTGTAAGGAACATGAATTGGTTTACTGTCTGTGAGTTGA
ATGTCCATGTAGAAGTCCTTCATCTCCCCTATGTCTGATTTTTCCTTTGA
GAAGACGTCGCAATATTCATACAGTACCTTTCCCACTGCCTCTTGTTTTT
CTTGATCAAGGTGGTCAAGATTTACTGCAGGTTGCCATTTTCCTTTACCC
GCTTCAACATCGACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015239-exon-sc0000205-1491911889:66595..68669 | TCONS_00015239-exon-sc0000205-1491911889:66595..68669 | Clytia hemisphaerica | exon |
| TCONS_00015239-exon-sc0000205-1510915933:66595..68669 | TCONS_00015239-exon-sc0000205-1510915933:66595..68669 | Clytia hemisphaerica | exon |
| TCONS_00015239-exon-sc0000205-1575043694:66595..68669 | TCONS_00015239-exon-sc0000205-1575043694:66595..68669 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000205 | supercontig | sc0000205:66595..68669 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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