TCONS_00001364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001364
Unique NameTCONS_00001364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001364 ID=TCONS_00001364|Name=TCONS_00001364|organism=Clytia hemisphaerica|type=transcript|length=814bp
ACTGAAATAATAACTGCTCTTCCAGAATGCCTTTGACAATTGTGAATTAA
ATTGGACCCAAAAACCATACGTTAGACCAAAGAATGGCTTTAAAGCGTAA
TAATTATCTTTTGAGGTATTAAGTAAATAAACAGTGTTCATTGGTTAGAA
TAGCTCAGGGGTCATCTGGCACCCAGatacagaaattttcatcctaCACG
CTAAAGCTGTGAAGgtcaggaaaattttcaacatctggatgGTTCAGATT
ACGGGATGttgcaagaccgcgtcaaggattttgcagcgggaggcctAGTA
ACCAATTCcttgttttcggggattggcgcgTCCAACTGAAATATTTTGAG
CTATACGCGCAATGGTAGTTGAACTGGACTGgagatgcggcacatcaaag
acCGACTATCATCCCGCTCCGATGTGAAATTGGCCCGCCAGATAACTCAG
GAGTTACCTTCATTAGATTTATAGAtgctctttcatttttcttcatagGG
GACTCCGTCTACTCCGAAAAGTACACCTCTTACCGAAACTTTCCGAGAGC
GACCGCCTTGCGTGCACACGTGGAGCTGCCGAAGTATGGATATGATCGTA
TCACTATGTTGCTTCAAGCGAGATAAGGAAATGGTTGCGGTTGGCCTAGA
AACTGGATGCATTTCTTTATTCGCGTTGAGCGGTGATTACATTGGAATGT
TCAGTCAGGTGATGTATTTAAGATTCCACTTTCCGCGCTAAGATTCTCCT
GACTTTTCCGGAATTCTTCCACTAGATTAGAAAGAGTTTTTATCTAAATG
TACtaaaaatcttg
Run BLAST on NCBI

transcript from alignment at sc0000010:619976..620789+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001364 ID=TCONS_00001364|Name=TCONS_00001364|organism=Clytia hemisphaerica|type=transcript|length=814bp|location=Sequence derived from alignment at sc0000010:619976..620789+ (Clytia hemisphaerica)
ACTGAAATAATAACTGCTCTTCCAGAATGCCTTTGACAATTGTGAATTAA
ATTGGACCCAAAAACCATACGTTAGACCAAAGAATGGCTTTAAAGCGTAA
TAATTATCTTTTGAGGTATTAAGTAAATAAACAGTGTTCATTGGTTAGAA
TAGCTCAGGGGTCATCTGGCACCCAGatacagaaattttcatcctaCACG
CTAAAGCTGTGAAGgtcaggaaaattttcaacatctggatgGTTCAGATT
ACGGGATGttgcaagaccgcgtcaaggattttgcagcgggaggcctAGTA
ACCAATTCcttgttttcggggattggcgcgTCCAACTGAAATATTTTGAG
CTATACGCGCAATGGTAGTTGAACTGGACTGgagatgcggcacatcaaag
acCGACTATCATCCCGCTCCGATGTGAAATTGGCCCGCCAGATAACTCAG
GAGTTACCTTCATTAGATTTATAGAtgctctttcatttttcttcatagGG
GACTCCGTCTACTCCGAAAAGTACACCTCTTACCGAAACTTTCCGAGAGC
GACCGCCTTGCGTGCACACGTGGAGCTGCCGAAGTATGGATATGATCGTA
TCACTATGTTGCTTCAAGCGAGATAAGGAAATGGTTGCGGTTGGCCTAGA
AACTGGATGCATTTCTTTATTCGCGTTGAGCGGTGATTACATTGGAATGT
TCAGTCAGGTGATGTATTTAAGATTCCACTTTCCGCGCTAAGATTCTCCT
GACTTTTCCGGAATTCTTCCACTAGATTAGAAAGAGTTTTTATCTAAATG
TACtaaaaatcttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000728XLOC_000728Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001364-exon-sc0000010-1491911889:619976..620789TCONS_00001364-exon-sc0000010-1491911889:619976..620789Clytia hemisphaericaexon
TCONS_00001364-exon-sc0000010-1510915933:619976..620789TCONS_00001364-exon-sc0000010-1510915933:619976..620789Clytia hemisphaericaexon
TCONS_00001364-exon-sc0000010-1575043694:619976..620789TCONS_00001364-exon-sc0000010-1575043694:619976..620789Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:619976..620789 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.316257	0.0705621	0.920008	0.862969	0	0.182438	0.115967	0.449868	0.0777146	0.416729	0	0.234217	0	0.154183	0	0	0	0	0	0	0	0	0.0965795	0	0.0996311	0.269346	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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