TCONS_00001491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001491
Unique NameTCONS_00001491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001491 ID=TCONS_00001491|Name=TCONS_00001491|organism=Clytia hemisphaerica|type=transcript|length=376bp
CAAAATCTCGTAATCAAACTaaggaaaaatctgaaaatctgaaaaaattc
gtcaattcgcgaaattaaatcctcgcgaaaatttacAGTCGAAGTTAGTC
GTgaaaataagtcccgcgaaaattaattcccttaaggtaatactACAGTA
AACTAGTCAATGCCGGACATAATCAAATCTCCTTACCTGAAGGCCAGATC
TCTAGAACATAGGGAATACCAGGTGCGGTACGGCGGTCAGGACCGAGTGT
TACACGTAGGTAAGCAAACTgttcttccttttctttcaacttttcgtaTA
AAGTCATTCCAGGTGTGTTGATGCTGTACCGTATGGCGTCTGAAAGTTTC
GTAATAGGATCTTCTGGAAACTCCAG
Run BLAST on NCBI

transcript from alignment at sc0000010:598114..602797-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001491 ID=TCONS_00001491|Name=TCONS_00001491|organism=Clytia hemisphaerica|type=transcript|length=4684bp|location=Sequence derived from alignment at sc0000010:598114..602797- (Clytia hemisphaerica)
CAAAATCTCGTAATCAAACTAAGGAAAAATCTGAAAATCTGAAAAAATTC
GTCAATTCGCGAAATTAAATCCTCGCGAAAATTTACAGTCGAAGTTAGTC
GTGAAAATAAGTCCCGCGAAAATTAATTCCCTTAAGGTAATACTACAGTA
AACTAGTCAATGCCGGACATAATCAAATCTCCTTACCTGAAGGCCAGATC
TCTAGAACATAGGGAATACCAGGTGCGGTACGGCGGTCAGGCCCAAGTGT
TACACGTAGGTAAGCAAACTGTTCTTCCTTTTCTTTCAACTTTTCATATA
AAGTCATTCCAGGTGTGTTGATGCTGTACCGTATGGCGTCTGAAAGTTTC
GTAATAGGATCTTCTGGAAACTCCAGTTGAAGACCTGTAGACGATAATGA
TTTTTTAAGTAGTAACGTCTATTCTAGACCATGAACCAAAAAAATATTAG
AAATTAGAGATCAACNGCAGATGATAATGACTACTGATGAATAACTTGCC
TATATTTAAAACGTCAAGGCTATTTTTCTAAGCAGTAACGTCTATTTTAG
ACCATCAAAATACGTTAGAAATTAGAGGTCAACTAGACATTAGTCTCTGA
GCAGATTCTACTACTCAACGCATGGCATGGCAAGTATTCACTCTAAAGGG
CATGGTTCCATAAAATAATTTGCTCATGTTTGCGGAATGAGATTTTGTGC
GCAGTTATTGGCTAAAGCAAAGCAATCACACCAAAATCATATGTCAATCT
TATAATCATTAAAACCAAAAAGCAACGTAGTTTTAATTGTTTTGACAGAC
AACCAAGTTAGATCGGCACATTTGCCAAATCCCTTTAGGAGCAGAATAGA
TGATCTGTTATGAAATTAACTAGACGTACCTTTGATATTATCGTAGAGTT
CTTTACAGGCAGGTGGTAGGCTACTTGAAAACATGAATTGATCTCGATCA
AGATCGAACAAAGTGACTTTCGAGCTATCTTTAACGATAGGTGAGAAATT
AGTCACGAGAGGGTTGGGATAGAATTGTAACGTCTGTTCGATTTTGACCA
GTCCTCCTGTCACGTCCTCCACCATTTTCTCCGATTCGGCAACCACGTAT
TTTTTCTCTTCTAGAAAAATAAATATAAAATTAATAATTCGAACCTAGCC
TCAAATGGTAAGAAAATTGGTCAACCCATAAATCTTCGGACGGACAGACA
GACAGAGAGACACGAAGAAAACAATACAGAACTGTTGATAAAAGCCAAAA
CCCACCTTTCCAAAAGAAAAAACTAACACTATCCAAGCCTAGTGTAAAAA
CTGCCAATTAGTAAACATCCATCAACCCAATGTCACACACCTAAATAACC
ATTTCCATCCGACATACACATTATATGAGAGAAATCCAATAAAACGACAA
ATCCGGTGACAATATTGTAAGACAGACAGACAGACAGACAGACAGACAGA
CAGACAGACAGACAGACAGACAGACAGACAGACAGATTTATACCCAAACT
TAGTTGAAGTTGATAACCAAGGGAAAAAAAACAAAAGTCGATTGAGAATA
TTAGCGACTTCAAAGTCTAACCTGCATTGAAGAAAATATTGTACTTCTTT
CGAATGTGCTCTTCTTCGCCTTTCGATTTGCCTTCCAAGAAAGGGAACTC
TAATAGTGTTGTTTGAGTCATAACGTGCCCTTTGCCGTATTTCAAGGTCA
GTGCATCGCGGTCATAACTGAACCAATAACTGACCTAAAACCAAAAACAA
ATTCCAACGTTAAAGAAAAATCACGAGCTTTAAGAACGCTACGTATAGGA
CAGGATATATAGCTGTAAAAACAATAGAAGTACAACTACGTAACGTAACC
AGACTGAGAAAGTCTAGACGAAAGATAAGACGATGTGATTAGTACAGCTT
ACCAGTTCTTTGGGTTCAATTCCAATATTCTTCCCATATTCTTCTTTCAA
CACTCTCTCTTCACCATCTTTATGCATCTTCAGTTTGAAACGTGCAAAAT
TCTCACCAACAGTCAACGAGATGTAGTTCTCCGTATCAAAACTTTGCTCC
TCTTCAAACTCTGAGAATTCACTATCGAAATCTAAGCTTTTTGGTACCTT
TTGTTTGTCAGGTGTTATGTAGATGGTGAATTGACTCTTCTTACGAACGG
TATAGACTAGAGTCCCTTGACCGTTTACGGGAAAGACAGCAGTCCTTCTT
CGAGGCATAGCTCACCTTGGTTTAAACAGCTCAGCTTCTAACAACAGTTT
CTCTTGAAAACTTAGTTGCCGTTTTCGTTGAATGATGCACGTTTTAAATT
GTCTCCCTCGCGGTTTACAAGTAAAGTAGTTTTGAAGATTCGTACACATT
ATGGCGGCTTTATATAAAGGATTGGAAAGAGGCTGATAGTCACAAGATAG
TCACAGATTCAAATCACTGTTTGAGTCAGCAAAAACTTTTAGGTTTTTTT
TTTCGCAGAATGTAAAACACCTTTCTAGGAAAGAAGAGGAGCTTGTCTAT
TACCAGTAAACTAATTTTCTTTCAAACAGATACACGTTTTTTTATAAGAA
CATCCAAATTTTTTGAAGCCTTCAGATGTTCTTAACTTTTTGAGTTTCAA
AATGTCCTTAACATGTTCTTATTTTCCCCCAATTTTTATGTATTTTTGTC
CATTTTCCTAAGTAATTGGCTGTTTTTGAGTCCGCGAAGCCTTAAAATGT
TCTTAACTTATTCTTAACATTTTGGTCATCGAAGCCTTATGTTCTTATAT
AGTTTGTTCTTATAAAAAAACGTGTAAGATTGTGTTGGAACGAGAATTAT
TTCCTTACTAGTATTTTCGTTTGTTTGTTTGAATTTACTAAACATCAAAG
ATCATTAAAACAACATAGAACTAACAAAGCTTTTTTAAGTCTATAAAAAT
ACTATAAGTTCCTAATTACGAGATTGTCATACGAATCATCATCTCCCGAC
AAAAGGTTCATATCGTTTTACCCACTTGCCTTATCATGTTTTACACAGAC
TCTATAGGATTATCTTAAAAGAAACTTCGGTGAAAGTATGTTTTGTCGAA
TCACTGATAATGTTTTTCGAGAATCTCTTTTCATACAACTAAATCGGTAT
TAAACAAATTTGATTTTTTTTTAAATATGAAATAGCCTTTTATTGTCCAA
CTCTTTGATACTTTTAAGTCGTTAACTCTTTAACAATTGCGTCTTTTTAT
TTTACCGTGCTGAAATACCGCGACTCTTTTACTGGCCGTGCCAATAAAAG
CCTGCAGGTAGACTATCTTGTCAAAATCTTGTTTCAGGGTTCGCACCAGA
AAGTTCATTTGGGGTTCGCTACCACAACTCATTACTGACAAAAGAAACGA
CTTGTGTACGAAAGTATCAGACAAATACAAAGCTATTAGCAAATAAATGC
CAGGCTGATGGAAAACACCCCCACTGATAAAAATAGGGTTAAACTGTAGA
AGCTCTAAAATATCTTTTAGATTACCCTCGGCTAAGAGGGCTAAATAAAA
TTTGATTAAAAACAACACTTTTACAGAAAAAAAATAAAATCAAAATCACT
ACTCAGCCTTCCAAGAATTTTTGATACTCGTCAAGAACAGTTCGTCTCAA
ATTAACGAACGTGAAATCGCTATCTGGATAGAATTCTTCCAACTCATATT
TTTCTTTGCCTTCTACAAAACCCACATAATGGAAATTTGGGCAGCGAATT
GCATCATTGAAGTCATATCGATAGCATTGTATGGTTGCGCAGAAATCATC
AGTGTTATTGTGTAAGCGATGCGTTTGATACCAGTTGGGGCCTATCCAGG
TCATTTGCTCTTCATTGAGATCAAATCTGGTCAAAGGTTGCATTTCTGTT
TGTTCTGGTGGCTGTGTGATCTTGTTGTAGATGTTGCAAGTGATTCTACC
AAATAGCACTTTAATGATAGCGCATGCTCCTCCATGATTATGGATAGGGC
TTCCTTTTCCTGAGAAAGAAAGCAAATATAGATTCATCAACCCTGGACAA
TCCCCTGACCATGCTAATTTATTTCGCAGTTAGTAATATAAAAGAAGAAA
ACATATGAGCGTATAATCTGAAAAAGTNGAATTAAGTTACTTTTATAGTA
TAGTTATAGTTTCCCAGGGGCGAGAGACCACCGATGTCTGAAGTCACTCT
ATCGGAAAATTTTCAGAAATTGATATTCATCGACGCTGGTAGAATCAACC
CTATCTGTTTGTGCGGTGGATAGTTGTTCTAACACTTTGTGATGAAAATC
ATAAATTTTGAATTTATGGAAACTTTCTTTGGACCATCCGGTATACATCA
AGACACATCAACGAGTAATGCGATTCATGATCTCCCTCTTAAATATTGAA
AACATGTTACTACCACTACGGTTAACTTGCCAAAGCGAGCTGCACTGAAC
CATCTCCTTACCTGAAGGCCAGATCTCTAGAACATAGGGAATACCAGGCG
CGGTAGACGATAATGATTTCAAATTTCCAAAAAGTATTTATACCTATGGC
CTTCAGCGACCGTAGTGCAGTGGTAGAGCTTCCGGCTNCGGCGGTCAGGA
CCGAGTGTTACACGTAGGTAAGCAAACTGTTCTTCCTTTTCTTTCAACTT
TTCGTATAAAGTCATTCCAGGTGTGTTGATGCTGTACCGTATGGCGTCTG
AAAGTTTCGTAATAGGATCTTCTGGAAACTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000758XLOC_000758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001491-exon-sc0000010-1575043694:602558..602797TCONS_00001491-exon-sc0000010-1575043694:602558..602797Clytia hemisphaericaexon
TCONS_00001491-exon-sc0000010-1575043694:598114..598249TCONS_00001491-exon-sc0000010-1575043694:598114..598249Clytia hemisphaericaexon
TCONS_00001491-exon-sc0000010-1510915933:602558..602797TCONS_00001491-exon-sc0000010-1510915933:602558..602797Clytia hemisphaericaexon
TCONS_00001491-exon-sc0000010-1510915933:598114..598249TCONS_00001491-exon-sc0000010-1510915933:598114..598249Clytia hemisphaericaexon
TCONS_00001491-exon-sc0000010-1491911889:602558..602797TCONS_00001491-exon-sc0000010-1491911889:602558..602797Clytia hemisphaericaexon
TCONS_00001491-exon-sc0000010-1491911889:598114..598249TCONS_00001491-exon-sc0000010-1491911889:598114..598249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:598114..602797 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.240811	0.828656	0.481074	0.470656	0.286489	0	0.273127	0	10.1958	18.4154	1.61964	3.67837	2.54085	4.8264	20.0264	2.51388	41.8652	36.6073	58.5864	84.083	2.99772	5.20567	11.6754	16.9751	0.456178	1.01827	48.3521	94.2264	101.493	43.1155
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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