TCONS_00014932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014932
Unique NameTCONS_00014932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1082

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014932 ID=TCONS_00014932|Name=TCONS_00014932|organism=Clytia hemisphaerica|type=transcript|length=1082bp
TCCNCAGCCAGTGTTATTAGAATCTGGAGATGTTTTTATGCCCAAATTAC
AAAGCCCTGCTCATCAAAAAACAGTACTGACAATGCATGGACGAGAATTA
TTCGAAGTTGTGGAGGCTcccttgaaaaatatattgatGTGTTATTTAGA
AAGCTCAAACTCAACGAAACCCACAACTTCCAACCAGCACACGTGGCTCA
TCATTGACTTcatggaaagatattttatttGGATACTACTGCTTCTCATG
GTTGTAACGAATCTGGTCAGATGGCAAACCACTCATCTCACTCGCTCGCA
TTTGCTAGAAATATTTCTCTTACAACCAtgtTACATGCTGTTACCATTGC
TTCCAACAATTTACCCCCTTCTTTGGACTTTCACTGGTTTTTATGGAAGT
GCAAGACTACTCACATTGTTCAAGTCCTCGACAAAGCTTCCAGATACAAG
TAATGACTCAGAAGATGTCAGACTACAACATTTACATTGTGGTGAAGTAC
TTGGTGTGTTTCGAGATATTGCAATGAACGCTTCGCCACACAACGTTCCC
AGAACTATCAACCTTGTTCAGAGTGTTGGCTCCATCACTACTTTTTCATG
TATTGACAAAGAAGGCGTATTATGTTACCCGCAACCCACACCGGAGaagt
tgtttttcttcaaagaacATTCAAAGGTAAAGCGATCAGAAGAGATGGAC
GATCTTGTTCATGTCGATTCCTTGTTGTGCGATGAAGAAGACAAAACTGA
AATCCAACCCTTCAAACAGGCTCCTGAACTGCGAGaTAACGCTGGTGAAA
GTGAACACCACTGTGTTCTTCTCAATGACATCGAAATCATGTCTCTGTCA
CATAACTCAAGTTGTCCGTCGGGTATTCAATTTGATGACGTTGATTGGAA
GGAGCAAATGTCTTTTCTCCGAACCATAGTAAGTACTTCCAATTATGAGA
GAATTCATTTATTTAAACATCACAATCTAAATTAGATCGATTATAACTTT
TCAACAAGTCATACCGTCatatgatttttattttgatgcaaTTGTTGTCT
AAAAATTCAGTACGTCATCAAAGAAGTCATTA
Run BLAST on NCBI

transcript from alignment at sc0000201:181192..186591+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014932 ID=TCONS_00014932|Name=TCONS_00014932|organism=Clytia hemisphaerica|type=transcript|length=5400bp|location=Sequence derived from alignment at sc0000201:181192..186591+ (Clytia hemisphaerica)
TCCNCAGCCAGTGTTATTAGAATCTGGAGATGTTTTTATGCCCAAATTAC
AAAGCCCTGCTCATCAAAAAACAGTACTGACAATGCATGGACGAGAATTA
TTCGAAGTTGTGGAGGCTcccttgaaaaatatattgatgTAAGTTTTTAA
TGTTATTGAAACCAATTAAGATGACTGCAACAGTCATACTACCGAACCAA
GAAAACTAAATACCAAAAGATATTAATTTCATCTGTTTCAGGTGTTATTT
AGAAAGCTCAAACTCAACGAAACCCACAACTTCCAACCAGCACACGTGGC
TCATCATTGACTTcatggaaagatattttatttGGATACTACTGGTAAAT
ANaccctgacaccccctgtataatacaatatactatcaagcaaactgcca
aatataccccaacaccccccttacatagtacaatatactatccataaaac
taccaaatatacccctacaccccttcataaaataaaagttttaagCCAAA
AGACTTGNcatggaaagatattttatttGGATACTTCTGGTAAATGATTC
TCTACTTCTTTTATTAGATATTGTCTGGCTTTGTCTACTCTTTGAAATAA
TTGAAAGTTATCCAAAGTTCTAATCTGCGTAATAAACATGGAAGTTTACT
TGTCCTTTATCACCGGCAATTGTCAATTTCTTTCAATGATCTCCCAGTAT
AAAAACTTGGAAAACCTGAGGATAATAAGAATTGTGCTCAAATGTAGCTC
CATGGTGATAAGAAACTACTTTGAATTTAACTTGATATTGATTACTGGGG
GAGGGAGTTTTGTTTGCCATTGGTCAAGCAAATCTATAAGCACAGCAATG
TAATTTAACATGAAACTTAAATATACATTTGCAGCTTCTCATGGTTGTAA
CGAATCTGGTCAGATGGCAAACCACTCATCTCACTCGCTCGCATTTGCTA
GAAATATTTCTCTTACAACCAGTATGtatttgatctttctttttcttcga
atttatcttaaaatttccaagCTAAAAATCCCAAATAAAAGAACTTGGTC
ATTCATGACATTAAACTCTCAGAGTCCACGCTTGGCTAACCAGGGGGCAT
GGCCCTCACTGTCGTCGACGCAAACCAAGCTTGCGCCTCACCTAGTTATA
CCAGATCATAGTTGGGTcgtatttttatttcatttttatgcaATATATTA
TTtcctttctatttattttagtgtTACATGCTGTTACCATTGCTTCCAAC
AATTTACCCCCTTCTTTGGACTTTCACTGGTTTTTATGGAAGTGCAAGAC
TACTCACATTGTTCAAGTCCTCGACAAAGGTTTTTTTGTTAATAGATCTT
TACTTACAATGAATTGGTATTTATTGTATGTTCGATTCgtcaagaaatta
tttttgatcaatttaaaaataaaatcgatGATAACTCTTTGACTTTTGGG
AGACAAACGCCTTTGATAGTGATTTTGTATTAATTTGGTTTATTATTATC
TTTGCAGCTTCCAGATACAAGTAATGACTCAGAAGATGTCAGAGTAAGCT
TTTCACGATCcatctttttattttcacaaTGAGATATCTCTTACTCTTTC
CTTGATTGATGAACTAAACAATGATGACAACAGCCTCTTACATCAAACTG
ATGTGACAGATTTATTGATCATTACTACCAATAAactcattttttttgca
ttctattTACATCCAGCTACAACATTTACATTGTGGTGAAGTACTTGGTG
TGTTTCGAGATATTGCAATGAACGCTTCGCCACACAACGTTCCCAGAACT
ATCAACCTTGTTCAGAGTGTTGGCTCCATCACTGTATGTCTCACAAATTG
AAATTTACTTTTGATGACGTTCTAATTTTCATCTGAATTGCAGGGATTTT
CCCTTATTTGCAGGAAAATCAGTTTTATCCTTTTAATTCTAATGTCTCAG
GATATCTAGAAATTAAGAAATTTaagcaaaacatttttaaagctCATTGC
ATCGCATAACTCATATCTAAAAATATCTTGACCACTATTGGATGTCGAAG
TCTGTGCTATGATTCAAAGCAAATTAAGGGCCATTTCaagtcgatttttg
aattttaagagaATAATTTGTATAAAACTTTAGAATAATGTCTTTGACTA
ATCTAGACTAATTCCATAAAGATGGTAAAAAACGACATTataaacgtcaa
aaaaatgtcaatctcccctttttgaaaaaagtactACATCCTAGTAATGG
GCAATTAATTTGGGATAAGAAACAGACAAAAttctgttttaaaattttgc
gaTGAAATAATatccaaaaacattattttctgtttgaatttccgtattac
ttcgaataaacgccccctttttttaaacgccccctcaaataaaagcttcc
ttcttttaaacgcctccCCTCTAGATTGGGTGTTTGTTTGAAGCAAGTAG
CCTTGAGGGAGTATTATATGGAGGATTGTGTTGAAAATCTGATAATCCTC
ATTTCAAAAGTATTCATTTTCtttgtatcatttttttttcatcgcgATTG
ACCTATAAGTTATTTGACACATTTGATTCAATTTCCCTAACAAAAATTTA
CAGCAAGTTGTAAATATATGTTAATTAAAATTAGGGTCCTACCAAATAAG
GTTAGAGGTTTAggaaaagaatcaaaaagctaACCGATGGACGGCGGGGG
CagagaaattgcccaaaaaagggatgttccaccagtgtaATTTTAGGAGA
TTAAGGAGAGGCAAAATCATCTTTTAGAGAAGGTCTAACGATTCTTGAGG
CTTTATTTTATTTCCTGTCCCTGTTGATTATGCTAGACGACCATTCAGTC
ATATGTTTCATGTTGACTGACCTTTCATGCTGAATATCTCTTTTCAATTG
TAGACTTTTTCATGTATTGACAAAGAAGGCGTATTATGTTACCCGCAACC
CACACCGGAGaagttgtttttcttcaaagaacATTCAAAGGTAAAGCGAT
CAGAAGAGATGGACGATCTTGTTCATGTCGATTCCTTGTTGTGCGATGAA
GAAGACAAAACTGAAATCCAACCCTTCAAACAGGCTCCTGAACTGCGAGG
TATGAACAGCTCTATATGTTTCCTACAGTCGATTAAATCTAAGGAAGTGT
GCTTCCtctagcaattaaagttgagcGCGAGTATTTATTGACCCTTAGAT
TATCAACGGCCATAATTTAACGGTGCTTAACAAGCTGCAATTTCTGCCGT
TGATTTTATTCTACTTTTGACTCTACGGGAATTAACATCGGTCGGAGTTT
TAAAGGTCGGGAAATGTCGACAGACACTTGAGAACGAGATGTTGAAAATT
CCAGCTAGccattatttacataaatcTATCAAAGCTTTGCTTTATTGGAA
GTAGCAGTACTCTTGGTTTGAACTGACGAATCGGTGTTGGTTGTAGTTGG
TGGTTCTTCTTAGTTGAGTTTTCCTTTTGAGCTTTCAAAATTGGATCTTA
TTTACGTTGTATTTATTTCTTAACTTTTAAGTGGAGCTTCTCCACTattc
ttcttttcttcagaTAACGCTGGTGAAAGTGAACACCACTGTGTTCTTCT
CAATGACATCGAAATCATGTCTCTGTCACATAACTCAAGTGTGAGTACAT
TCTAATCATAATGCTCATTCCATCACGACACGTTTTATACAATGAAGATT
TAGACTGAAAATTTACAAACACGTAGTCGGCCTGAGAATTGGCAGTTTTG
AcgaaatttgcttaaaatatCTATATAAATTCTCAGTTACTCTGTAGTCA
ATGTAAATACTTTTCATCACACCGAAATTGTATTGAAGATTTACTCGATC
GGGGAGCCAATTTTTATGATACACAAGAGAGTTATATTTTATATTCTCTT
TTTCTAGAGTCCATTTTGAAAAAGCCTATAAGATTTTAATCTGAACTTTC
ATAGACTGGGCCAAAATTAAGAtgcttaagagccattttctgtaagaaTC
AGGCAGGTCGAGGAAGTGATATCCtcagattttgccaatttttggatatt
ttgctcaaatacatgaaaataacatcctgtaaaaatttttttgaaaaatc
ctctTTCGTTCCCAAGATATGGGCCtttaaaatttgggccaatttgccca
gaaaagtgcacttttgataaatctttgacttcaagagcaattttagacat
gatcaagcttaagattcatttcaaaacatattttcctggaagaaatccat
gggtactttgaaaaaatggcattttgagaaaaaatttttgacccCACGGC
TAGAAATCATTGCCTGAAATCAcaacatttctaattttgaatagattttg
aGAGCAATTAGCTGGCTTGGCCACAAGTGTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattgatatttttgta
tatttctgaagtctttatggtcatctttaactttcaattaaaattttcat
gtgaCACTTAAGGCCACGCCCTAAAATGGCGGTTGAACATAGCTTTTCGc
tcaatttttagtattttcaatgagcttttaaagccaTGGCCCTAAGTTTC
ACCtctgaaacaaaccatttttagTTAGTGTTTTGGCCATATTACCCAAT
CCTAAAATCAAACCCATGTGCTCCAATACCATTTTTGCACAATTTATctt
cgaaaatctttttaagtcaTCAATTTTTCCCTTAGCAACGCATTGTTTTT
CCCTAGCAACCAGGCATCCAGCTTGATCAAAATTTTAGGGCAAATTAGGG
TCGCAGAGACAGAAATAGCAGACCCCAACAGGTAAGTACCCATGGATTTC
TTCcaggaaaatatgttttgaaatgaatcttaagcttgatcatgtctaaa
attgctcttaaagtcaaagatttatcaaaagtgcacttttttgggcaaat
tggcccaaattttaaaGGCGGCCATATCTTGGGAACGAAAAAagattctt
caaaaaaaaattcacaggatgttattttaatgtatttgagcaaaatatcc
aaaactgattttttacagaaaatggctcttaaattTTTCCTCACTTTTCC
AATTTCATTTTATAACGCCATCTTTTGTAGTGTCCGTCGGGTATTCAATT
TGATGACGTTGATTGGAAGGAGCAAATGTCTTTTCTCCGAACCATAGTAA
GTACTTCCAATTATGAGAGAATTCATTTATTTAAACATCACAATCTAAAT
TAGATCGATTATAACTTTTCAACAAGTCATACCGTCatatgatttttatt
ttgatgcaaTTGTTGTCTAAAAATTCAGTACGTCATCAAAGAAGTCATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008350XLOC_008350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014932-exon-sc0000201-1491911889:181192..181329TCONS_00014932-exon-sc0000201-1491911889:181192..181329Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1510915933:181192..181329TCONS_00014932-exon-sc0000201-1510915933:181192..181329Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1575043694:181192..181329TCONS_00014932-exon-sc0000201-1575043694:181192..181329Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1491911889:181433..181535TCONS_00014932-exon-sc0000201-1491911889:181433..181535Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1510915933:181433..181535TCONS_00014932-exon-sc0000201-1510915933:181433..181535Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1575043694:181433..181535TCONS_00014932-exon-sc0000201-1575043694:181433..181535Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1491911889:182076..182162TCONS_00014932-exon-sc0000201-1491911889:182076..182162Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1510915933:182076..182162TCONS_00014932-exon-sc0000201-1510915933:182076..182162Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1575043694:182076..182162TCONS_00014932-exon-sc0000201-1575043694:182076..182162Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1491911889:182413..182520TCONS_00014932-exon-sc0000201-1491911889:182413..182520Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1510915933:182413..182520TCONS_00014932-exon-sc0000201-1510915933:182413..182520Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1575043694:182413..182520TCONS_00014932-exon-sc0000201-1575043694:182413..182520Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1491911889:182699..182734TCONS_00014932-exon-sc0000201-1491911889:182699..182734Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1510915933:182699..182734TCONS_00014932-exon-sc0000201-1510915933:182699..182734Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1575043694:182699..182734TCONS_00014932-exon-sc0000201-1575043694:182699..182734Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1491911889:182908..183024TCONS_00014932-exon-sc0000201-1491911889:182908..183024Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1510915933:182908..183024TCONS_00014932-exon-sc0000201-1510915933:182908..183024Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1575043694:182908..183024TCONS_00014932-exon-sc0000201-1575043694:182908..183024Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1491911889:184095..184290TCONS_00014932-exon-sc0000201-1491911889:184095..184290Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1510915933:184095..184290TCONS_00014932-exon-sc0000201-1510915933:184095..184290Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1575043694:184095..184290TCONS_00014932-exon-sc0000201-1575043694:184095..184290Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1491911889:184755..184831TCONS_00014932-exon-sc0000201-1491911889:184755..184831Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1510915933:184755..184831TCONS_00014932-exon-sc0000201-1510915933:184755..184831Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1575043694:184755..184831TCONS_00014932-exon-sc0000201-1575043694:184755..184831Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1491911889:186372..186591TCONS_00014932-exon-sc0000201-1491911889:186372..186591Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1510915933:186372..186591TCONS_00014932-exon-sc0000201-1510915933:186372..186591Clytia hemisphaericaexon
TCONS_00014932-exon-sc0000201-1575043694:186372..186591TCONS_00014932-exon-sc0000201-1575043694:186372..186591Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:181192..186591 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.26777	2.83826	3.64075	4.6994	3.04126	2.1547	3.1304	3.0377	2.73436	2.99774	0	0	0	0.684295	0	0	0	0	0	0	6.85379	6.34589	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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