TCONS_00014874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014874
Unique NameTCONS_00014874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2999

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014874 ID=TCONS_00014874|Name=TCONS_00014874|organism=Clytia hemisphaerica|type=transcript|length=2999bp
ATTGTTGttactttttattgaaatatactgtaataaaaattacaaaaaag
ttattataaaataattaaaatcatAATCTAATCAATCTTCATTTTGCTTC
TTCACAGGATTCCACAGCTTTTCTGGCTATGATTTAGAgaatatttctgt
aatttaGGGAATTCAATGATAAAAGTCTTCAAAAGCTTTCTTGACAAAAC
AAGGTCATTTCGAAGCttaaagcagcaaaatttcagaagcagttattttt
cttaattgcaaaaaaaataattgtatATACAAAATTTAATACGAGATATG
ATGAAGTGAGAACACTATATTTCATATGTCAAGATTTAACgcctaaattt
taaaaactaatTTCCCAGAGACTCCAAGCACTGGAGGATAAACAGTTTGA
TTAAAATTCTCGACCTATGAAATAAAATGCTCCAAAGTATgtacaaattt
taattttatgttACCAAaaatttaaactcaatggtgtCATTAAATCATTG
CTTTTGGAATTTGGCAAATATCgccattttatttttgacacttCCATTGT
TCGCTATACTATGGGGCTTCGTAACTAGTCTCTTACGAGTCGTCGACAAG
TTACTTTCGTTCAACGAGGCACGGACCGACGAATTTCTCGAAAAACGACC
GACAGGCGAGGATGTTCGGTCTTCAATAGACGAGCCGTCGCTATCGAAAG
ATCGCTCTTGACTCGCTTGTTTATTAAGCGAGACTTTTCGTGCAGCGATC
AGATTTCGATTGGTTAAAGGAGACGCAGTCGAATAGGTTCGCCTCGATTG
TTCAGGTGTTGACATACGTGTTTCCCAAGCCATAAAAAGTCCTTTTTTAT
CTTTGCCAGATACAGGCATATTTGTTTTGGCGTTGTTTCCTAGGCTTCCA
ACTCGATTACGTAATCGGTCTTGTCGATCTGGGATTTTTGGCGAGGAGGT
GTCTTCTTCAGGTTTTGTTATACTCGATTGAGGTTTCGGTCTTGAGCTGT
CGGTGACATCTTTCGGTTCTGTAGGCTCTGGTGTTTTCTTTGGTTTGGTT
GAAGCCGAGGGTGGTTGCTTTTTGGCGGAAGGTGTTTCCTCTGGTTTAGA
GGATTTAGGTTTATCTTGGACTGCTGGCGGTGTTGATCTTTTGGGTGAAG
TGGGCGGCGGTGCAGCTTTCGAAGATCTTTCAGGCGTAGCAGATACTTCT
GAGCTTGTAGAGGTTAATTTTTCTGGTGTTTTTAGTGCGTTCTTTTTGGG
TTTATCTTTGACTGCAGGTGGTGGAGATTTTATGggcttctttgaagtag
gtggTGGTGACTTGATTTGTTTTGTGTCAGGGTCTGTCGGCTGTGCTTCA
AATTTCGATGCTAGCTTCCTTGATGATTTTGGTGAAAGATGTTTCTTGTC
TTTGGCAGCGGGTGAAGTGATAGTCTTTCGTTGCGATTTTGGTGAACTCA
CTTTGTTTAGTAGTCCACTTATTTTACTACCGATTTTGCGACTGCTCTTA
GGACTGGTGACTTTCCCATTTTTGCTCTTTTCGGCTTCTGGTTCTTTCGA
CTTCTTAGGTGAATCTTTTGGTGGTTTGGAGCTTGTCTTTGGTGGTGTCT
TCTCAACCCTCTTTGCTGGCTCTGGCGAAGACATCTTAGGTTTGGGTTTC
TCGATTTCAGGGGATTTTTCTCGAGATCTTCTGGACTCTCTCTTTTCAGA
TTTGAGAGGCTCCGATGATTCCCTGATGTTCGTAGGTTTTGGTGAGTCCT
CTACTTTTGCTTCTTCTGTTTTTTTGGATATAGAAGATTTTGACGATTCC
TTGACCTCCTGGGGTTCTGGAGATTTTGCCTTTTCTCTTCGTGGAGAAAT
AACGGATTCCTTCTTCTCGCTTGATGTTGTGGTTGAAGATTCCCTGCGGC
GTTCCCTTCTGCTAGGTAGTGTAGATTCCTTTTCCTCAGTTTTGACCGAG
GGAGATTCCTTGACTTTTTTAATCACCTCTGATTTCGTCTTAGGCTCttt
ttcagcccacttttcaaaCTCAGGCTTCTCctcagattttttattttcag
tagAAAGTTTTTCAACTATTTCATCTTCAACATTCTCTGATGCAAACTTA
ACGTCATCAGAGTTCTTAAAGGAATCTATCTTTAAAGCTTCTTCCTTGTT
ATCAATGATTTCTGGAGACGGTGATACTTCTACCTTGTCGTTGATTTCAG
ATTTGGTGAATACTTTTTCAACATAATCATCTACAACAGAATGTTCTACT
TTTTCGTCAACAGAAACATTTTTAACAGATTCAACAGAAATGTCTTTCTC
AACAAGATTTTCAACAGATTTTTGTTCATTGTTCAACATTTTATCATCAT
TTTCAACGATAACACCCGCTGGTTCGTCAGAAATCTCATTGTTGTTGACG
TCGTATTTGGTTTCTGTGACGTCCTCCTCGGTCGTAAAAACGTTCTCAGA
TTCGAGCGTGACATTAATAGGTTCCACGGTATCAGATGGCGTCGTCGCAA
CGTCCTCTTCAGTAGCTTGCAAAGATTCTGGCGTGTCTTTAACGGATTCT
TGTGTATCTTCAGAGGGTTCTATGGTAGTACTTTTTTCACATTCCTCGAC
TGAGGTTTCTGTAACTTTAGGAGACTCTACCGTAGCTTGAGTTACTTCTT
CCGTTACTCTATTGGAAACGTTTGCAAAGACGTCGTAAtcctcttcttca
tcttcaaaacGTTTTCTCCGCCTCCTTTCCGCTCGCTTCTTTAACATATC
AGACATTTCATCATCGTCTCCAAAAGTGGACTCTGTGTTGCCATTAGTAA
CAATCTCTGATTGGGCAGGTTTGTCCTTGTGGAAGCCATTTGATTCGATT
ACGGTTTCGGGAGCACTCTCTGATTGGTTAGATTTTGAATCCACGTCTGC
TGATTGGCTGATTATTTCTTCAACTTTAGTTTCATCTTCCTTGTCAATGG
AATTTTCTTTATTGGCGGCATTGAGGGCGGCAAGCATGGTTTTAGCTAG
Run BLAST on NCBI

transcript from alignment at sc0000200:109226..112498-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014874 ID=TCONS_00014874|Name=TCONS_00014874|organism=Clytia hemisphaerica|type=transcript|length=3273bp|location=Sequence derived from alignment at sc0000200:109226..112498- (Clytia hemisphaerica)
ATTGTTGTTACTTTTTATTGAAATATACTGTAATAAAAATTACAAAAAAG
TTATTATAAAATAATTAAAATCATAATCTAATCAATCTTCATTTTGCTTC
TTCACAGGATTCCACAGCTTTTCTGGCTATGATTTAGAGAATATTTCTGT
AATTTAGGGAATTCAATGATAAAAGTCTTCAAAAGCTTTCTTGACAAAAC
AAGGTCATTTCGAAGCTTAAAGCAGCAAAATTTCAGAAGCAGTTATTTTT
CTTAATTGCAAAAAAAATAATTGTATATACAAAATTTAATACGAGATATG
ATGAAGTGAGAACACTATATTTCATATGTCAAGATTTAACGCCTAAATTT
TAAAAACTAATTTCCCAGAGACTCCAAGCACTGGAGGATAAACAGTTTGA
TTAAAATTCTCGACCTATGAAATAAAATGCTCCAAAGTATGTACAAATTT
TAATTTTATGTTACCAAAAATTTAAACTCAATGGTGTCATTAAATCATTG
CTTTTGGAATTTGGCAAATATCGCCATTTTATTTTTGACACTTCCATTGT
TCGCTATACTATGGGGCTTCGTAACTAGTCTCTTACGAGTCGTCGACAAG
TTACTTTCGTTCAACGAGGCACGGACCGACGAATTTCTCGAAAAACGACC
GACAGGCGAGGATGTTCGGTCTTCAATAGACGAGCCGTCGCTATCGAAAG
ATCGCTCTTGACTCGCTTGTTTATTAAGCGAGACTTTTCGTGCAGCGATC
AGATTTCGATTGGTTAAAGGAGACGCAGTCGAATAGGTTCGCCTCGATTG
TTCAGGTGTTGACATACGGGTTTCCCAAGCCATAAAAAGTCCTTTTTTAT
CTTTGCCAGATACAGGCATATTTGTTNTTTTCGTTCAATGACACACGGAC
TGACGAATTTCTCGAAAAACGACCGACAGGTGAGGACGTTCGGTCTTCAA
TAGACGAGCCGTCGCTATCGAAAGATCGCTCTTGACTCGCTTGTCTATTA
AGCGAGGCTTTTCGTGCAGCAATCAGATTTCGATTGGTTAAAGGAGACGC
AGTCGAATAGGTTCGCCTCGATTGTTCAGGTGTTGACATACGTGTTTCCC
AAGCCATAAAAAGTCCTTTTTTATCTTTGCCAGATACAGGCATATTTGTT
TTGGCGTTGTTTCCTAGGCTTCCAACTCGATTACGTAATCGGTCTTGTCG
ATCTGGGATTTTTGGCGAGGAGGTGTCTTCTTCAGGTTTTGTTATACTCG
ATTGAGGTTTCGGTCTTGAGCTGTCGGTGACATCTTTCGGTTCTGTAGGC
TCTGGTGTTTTCTTTGGTTTGGTTGAAGCCGAGGGTGGTTGCTTTTTGGC
GGAAGGTGTTTCCTCTGGTTTAGAGGATTTAGGTTTATCTTGGACTGCTG
GCGGTGTTGATCTTTTGGGTGAAGTGGGCGGCGGTGCAGCTTTCGAAGAT
CTTTCAGGCGTAGCAGATACTTCTGAGCTTGTAGAGGTTAATTTTTCTGG
TGTTTTTAGTGCGTTCTTTTTGGGTTTATCTTTGACTGCAGGTGGTGGAG
ATTTTATGGGCTTCTTTGAAGTAGGTGGTGGTGACTTGATTTGTTTTGTG
TCAGGGTCTGTCGGCTGTGCTTCAAATTTCGATGCTAGCTTCCTTGATGA
TTTTGGTGAAAGATGTTTCTTGTCTTTGGCAGCGGGTGAAGTGATAGTCT
TTCGTTGCGATTTTGGTGAACTCACTTTGTTTAGTAGTCCACTTATTTTA
CTACCGATTTTGCGACTGCTCTTAGGACTGGTGACTTTCCCATTTTTGCT
CTTTTCGGCTTCTGGTTCTTTCGACTTCTTAGGTGAATCTTTTGGTGGTT
TGGAGCTTGTCTTTGGTGGTGTCTTCTCAACCCTCTTTGCTGGCTCTGGC
GAAGACATCTTAGGTTTGGGTTTCTCGATTTCAGGGGATTTTTCTCGAGA
TCTTCTGGACTCTCTCTTTTCAGATTTGAGAGGCTCCGATGATTCCCTGA
TGTTCGTAGGTTTTGGTGAGTCCTCTACTTTTGCTTCTTCTGTTTTTTTG
GATATAGAAGATTTTGACGATTCCTTGACCTCCTGGGGTTCTGGAGATTT
TGCCTTTTCTCTTCGTGGAGAAATAACGGATTCCTTCTTCTCGCTTGATG
TTGTGGTTGAAGATTCCCTGCGGCGTTCCCTTCTGCTAGGTAGTGTAGAT
TCCTTTTCCTCAGTTTTGACCGAGGGAGATTCCTTGACTTTTTTAATCAC
CTCTGATTTCGTCTTAGGCTCTTTTTCAGCCCACTTTTCAAACTCAGGCT
TCTCCTCAGATTTTTTATTTTCAGTAGAAAGTTTTTCAACTATTTCATCT
TCAACATTCTCTGATGCAAACTTAACGTCATCAGAGTTCTTAAAGGAATC
TATCTTTAAAGCTTCTTCCTTGTTATCAATGATTTCTGGAGACGGTGATA
CTTCTACCTTGTCGTTGATTTCAGATTTGGTGAATACTTTTTCAACATAA
TCATCTACAACAGAATGTTCTACTTTTTCGTCAACAGAAACATTTTTAAC
AGATTCAACAGAAATGTCTTTCTCAACAAGATTTTCAACAGATTTTTGTT
CATTGTTCAACATTTTATCATCATTTTCAACGATAACACCCGCTGGTTCG
TCAGAAATCTCATTGTTGTTGACGTCGTATTTGGTTTCTGTGACGTCCTC
CTCGGTCGTAAAAACGTTCTCAGATTCGAGCGTGACATTAATAGGTTCCA
CGGTATCAGATGGCGTCGTCGCAACGTCCTCTTCAGTAGCTTGCAAAGAT
TCTGGCGTGTCTTTAACGGATTCTTGTGTATCTTCAGAGGGTTCTATGGT
AGTACTTTTTTCACATTCCTCGACTGAGGTTTCTGTAACTTTAGGAGACT
CTACCGTAGCTTGAGTTACTTCTTCCGTTACTCTATTGGAAACGTTTGCA
AAGACGTCGTAATCCTCTTCTTCATCTTCAAAACGTTTTCTCCGCCTCCT
TTCCGCTCGCTTCTTTAACATATCAGACATTTCATCATCGTCTCCAAAAG
TGGACTCTGTGTTGCCATTAGTAACAATCTCTGATTGGGCAGGTTTGTCC
TTGTGGAAGCCATTTGATTCGATTACGGTTTCGGGAGCACTCTCTGATTG
GTTAGATTTTGAATCCACGTCTGCTGATTGGCTGATTATTTCTTCAACTT
TAGTTTCATCTTCCTTGTCAATGGAATTTTCTTTATTGGCGGCATTGAGG
GCGGCAAGCATGGTTTTAGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008326XLOC_008326Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014874-exon-sc0000200-1575043694:111686..112498TCONS_00014874-exon-sc0000200-1575043694:111686..112498Clytia hemisphaericaexon
TCONS_00014874-exon-sc0000200-1575043694:109226..111411TCONS_00014874-exon-sc0000200-1575043694:109226..111411Clytia hemisphaericaexon
TCONS_00014874-exon-sc0000200-1510915933:111686..112498TCONS_00014874-exon-sc0000200-1510915933:111686..112498Clytia hemisphaericaexon
TCONS_00014874-exon-sc0000200-1510915933:109226..111411TCONS_00014874-exon-sc0000200-1510915933:109226..111411Clytia hemisphaericaexon
TCONS_00014874-exon-sc0000200-1491911889:111686..112498TCONS_00014874-exon-sc0000200-1491911889:111686..112498Clytia hemisphaericaexon
TCONS_00014874-exon-sc0000200-1491911889:109226..111411TCONS_00014874-exon-sc0000200-1491911889:109226..111411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:109226..112498 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0595374	0.0881651	0.1689	0	1.64201	0.639218	0.360734	1.77601	1.47971	0.160955	0.411102	1.51764	1.25195	2.52617	0.813693	0.00150115	0.0258367	0.0397448	2.55038	1.0674	2.34606	1.938	1.61041	1.4825	1.57993	1.14415	11.1567	15.1139	0.207318	0.458684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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