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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014726 ID=TCONS_00014726|Name=TCONS_00014726|organism=Clytia hemisphaerica|type=transcript|length=1832bp
TAAACTTCTATCTATCGCAAAATAGACTTTGATTGAAGTTGACGCTTGTT
CAGAAAGATAAACAGTATAAGGATGAAAGCGGATGCCATCTGGTTAATTT
TTGCTTCAAATTAATATATAACACAAAAATTATGAAAGTATAATTTCACT
CAGAGTGAGGACATCAGACCACGAAAATCTGATTTAAGCTAACCCTCCAG
ACGTTGCGAAGCTAATCTTTTCGTCAGTTTAAGTGATATTcacacaaata
tttttttgggaaTCAAAGACAAAATGAAACACGCATTCACATTTTTCGTG
TTCCAACTGTTCTGCTTGGTGGAATTTTCACATCAAAGGTATATTGAAGA
TAGAGATGGACCTTATCGCAAACCCATGCCTTTGATGCTTCACATGGACA
ATATTGAATCGCATTCCTCCCCGCCACTTCCAAACGATGAAGTACAGGGC
GGTATACATGACGCCCAAAGTCAACCCTTCGCCCTCCCTAATGATGAAGT
TCAGGGCGGTATGCATGATATCCAAAGTCAACCCTTCGCCCTCCCTAATA
ATGAAGTTCAGGGCGGTATGCATGACGTTCAAAACCAGCCCTTCGCCCTC
CCTAATGATGAAGTTCAGGGCGGTATGCATGACGTTCAAAACCAACCCTT
CGCTCTCCCAAATGATCTATTTCAGGGCGGTATGCATGACTCTCAGAAAG
GAATGCAACGTGATTCGTGGTCCAAATGAAATTATGGGAAGTCTGAAATT
ACAAAGAGGTTTGCAAGACACAAGAGAAAAAGATTGTACTTGCCAAAAAA
ATACAGGACGCCCTCACTTAGACAGAAGCATGTTAAATGGTACAAACGTA
GCAAataattttcttcgatttttatATTTAGAACACTTAGTAGCATTGTT
AAATAAAGGTATGATATATTTTTAGCCAGTTTAAATTACTTTCAAATCAC
AGTCCACATTATTTctcaatatctttccaacaacaTGAAAATAATTAAGA
GCAACCATAACAAATTGTTATCGATGGACCTGTAACAGACTGAGCCACTT
TTTCGAGATGTAGGACCTCTCACATTGGTGACTGCGTTTAAATCTAGAAC
TGTGTCTGTGAAATTGGAAAACTCTACAAAGTCAGCGATCACTATATTAA
TACCATTTTTTCCAATCTGTTTACCGTGTAACCAGTCCCTTATTTTTCGT
GTCGCTTTACTTGACACCCAACTTCTCAAGGTTGCATTTTCTGAAATGCC
AGCGATCACGACTTCCATCCAGTGTGGCTGCATGATCCCTTGAGTCACAT
AGAAAGTATCAGTGCCTTGTTTACCTCTATTTGCATAATTTAAATCAAGG
AAGTGCAACCATGACCATGTTTGCGTGAATTGTTTATAATCGAATGGTGA
TCGAATTGACGCATGCGCGTGAAGAATCGAATCTTTTTTGTTATTGTCAC
GTGATCGCTTGAATACAATAACGCTAATGTTTTGCTGCCACAGATCTTTC
AGTTTATAActttgaatgttttctgcaaATATGATACGGTCAGAAAAATA
ATCTTGTAACAAATCTGTAACATTCTTTAGAGCATTCTCTTTGCTGATTT
CATGGTTTGTTGCCATACTTTGCAAGTCCAGTAAGATGATTTCTTTGGAG
TATTTTATGATGAAGTCTTTGATCTGAGTAAATATGTCGTGGAGTGTTGT
CCCGAATAGACCATGAACGATTCGACTGAAAACGAATAACATTAAATGCG
TTGTCTATAAACTGACCATATTTTTCACAAACGTAAAGAAACAAACCCAC
CCTTCAACACAACTTCATGGTGGTTTTCGAAA Run BLAST on NCBI transcript from alignment at sc0000197:284238..286644- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014726 ID=TCONS_00014726|Name=TCONS_00014726|organism=Clytia hemisphaerica|type=transcript|length=2407bp|location=Sequence derived from alignment at sc0000197:284238..286644- (Clytia hemisphaerica)
TAAACTTCTATCTATCGCAAAATAGACTTTGATTGAAGTTGACGCTTGTT
CAGAAAGATAAACAGTATAAGGATGAAAGCGGATGCCATCTGGTTAATTT
TTGCTTCAAATTAATATATAACACAAAAATTATGAAAGTATAATTTCACT
CAGAGTGAGGACATCAGACCACGAAAATCTGATTTAAGCTAACCCTCCAG
ACGTTGCGAAGCTAATCTTTTCGTCAGTTTAAGTGATATTCACACAAATA
TTTTTTTGGGAATCAAAGACAAAATGAAACACGCATTCACATTTTTCGTG
TTCCAACTGTTCTGCTTGGTGGAATTTTCACATCAAAGGTATATTGAAGG
TATGAATACACACTCTTTAACCCCCCCCGTAATCTTCAATCAACTTCAAC
CGTCAATCTAATTTGGGGCTTTGTCATCACCCTAAAGCAACCATTTTTCA
TTCTCGTATTCTTATTAATCTTAACACTTGTTCAGAGTTACTTATTTGAT
CATTGATCACACAGCGGGGTTACTTAAGGATAGAGAACTTAAATTACATT
ATTACATAAATTCATAACTTTTCCTTCTAGATAGAGATGGACCTTATCGC
AAACCCATGCCTTTGATGCTTCACATGGACAATATTGAATCGCCGTCCTT
CCCACTTCCTAACGATGAAATGCAAGGTGGTATGCACGACGCTCAAAACC
AGCCCTTCGCTCTCCCGAATGATGAAGTGCAAGGCCGTATGCATGACACA
GCGAAAGATGGTATGCATTCTATAATTTTAGAAATTTAAGAGATTTTTCA
AAGGACCTTTATGGATACTTTTCTACTGTCCTTCAAACTTCCAACTTAAA
ATTTCTCAAAACAAATTGAGAGTTTTTATCTGTGATATCCTATTTCTTTA
GCCTAAACAGTAGTGTTATTTCCTTTCTAGATGGACCTTATCGCAAACCC
ATGCCTTTGATGCTTCACATGGACAATATTGAATCGCATTCCTCCCCGCC
ACTTCCAAACGATGAAGTACAGGGCGGTATACATGACGCCCAAAGTCAAC
CCTTCGCCCTCCCTAATGATGAAGTTCAGGGCGGTATGCATGATATCCAA
AGTCAACCCTTCGCCCTCCCTAATAATGAAGTTCAGGGCGGTATGCATGA
CGTTCAAAACCAGCCCTTCGCCCTCCCTAATGATGAAGTTCAGGGCGGTA
TGCATGACGTTCAAAACCAACCCTTCGCTCTCCCAAATGATCTATTTCAG
GGCGGTATGCATGACTCTCAGAAAGGAATGCAACGTGATTCGTGGTCCAA
ATGAAATTATGGGAAGTCTGAAATTACAAAGAGGTTTGCAAGACACAAGA
GAAAAAGATTGTACTTGCCAAAAAAATACAGGACGCCCTCACTTAGACAG
AAGCATGTTAAATGGTACAAACGTAGCAAATAATTTTCTTCGATTTTTAT
ATTTAGAACACTTAGTAGCATTGTTAAATAAAGGTATGATATATTTTTAG
CCAGTTTAAATTACTTTCAAATCACAGTCCACATTATTTCTCAATATCTT
TCCAACAACATGAAAATAATTAAGAGCAACCATAACAAATTGTTATCGAT
GGACCTGTAACAGACTGAGCCACTTTTTCGAGATGTAGGACCTCTCACAT
TGGTGACTGCGTTTAAATCTAGAACTGTGTCTGTGAAATTGGAAAACTCT
ACAAAGTCAGCGATCACTATATTAATACCATTTTTTCCAATCTGTTTACC
GTGTAACCAGTCCCTTATTTTTCGTGTCGCTTTACTTGACACCCAACTTC
TCAAGGTTGCATTTTCTGAAATGCCAGCGATCACGACTTCCATCCAGTGT
GGCTGCATGATCCCTTGAGTCACATAGAAAGTATCAGTGCCTTGTTTACC
TCTATTTGCATAATTTAAATCAAGGAAGTGCAACCATGACCATGTTTGCG
TGAATTGTTTATAATCGAATGGTGATCGAATTGACGCATGCGCGTGAAGA
ATCGAATCTTTTTTGTTATTGTCACGTGATCGCTTGAATACAATAACGCT
AATGTTTTGCTGCCACAGATCTTTCAGTTTATAACTTTGAATGTTTTCTG
CAAATATGATACGGTCAGAAAAATAATCTTGTAACAAATCTGTAACATTC
TTTAGAGCATTCTCTTTGCTGATTTCATGGTTTGTTGCCATACTTTGCAA
GTCCAGTAAGATGATTTCTTTGGAGTATTTTATGATGAAGTCTTTGATCT
GAGTAAATATGTCGTGGAGTGTTGTCCCGAATAGACCATGAACGATTCGA
CTGAAAACGAATAACATTAAATGCGTTGTCTATAAACTGACCATATTTTT
CACAAACGTAAAGAAACAAACCCACCCTTCAACACAACTTCATGGTGGTT
TTCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014726-exon-sc0000197-1575043694:286296..286644 | TCONS_00014726-exon-sc0000197-1575043694:286296..286644 | Clytia hemisphaerica | exon |
| TCONS_00014726-exon-sc0000197-1575043694:286021..286064 | TCONS_00014726-exon-sc0000197-1575043694:286021..286064 | Clytia hemisphaerica | exon |
| TCONS_00014726-exon-sc0000197-1575043694:284238..285676 | TCONS_00014726-exon-sc0000197-1575043694:284238..285676 | Clytia hemisphaerica | exon |
| TCONS_00014726-exon-sc0000197-1510915933:286296..286644 | TCONS_00014726-exon-sc0000197-1510915933:286296..286644 | Clytia hemisphaerica | exon |
| TCONS_00014726-exon-sc0000197-1510915933:286021..286064 | TCONS_00014726-exon-sc0000197-1510915933:286021..286064 | Clytia hemisphaerica | exon |
| TCONS_00014726-exon-sc0000197-1510915933:284238..285676 | TCONS_00014726-exon-sc0000197-1510915933:284238..285676 | Clytia hemisphaerica | exon |
| TCONS_00014726-exon-sc0000197-1491911889:286296..286644 | TCONS_00014726-exon-sc0000197-1491911889:286296..286644 | Clytia hemisphaerica | exon |
| TCONS_00014726-exon-sc0000197-1491911889:286021..286064 | TCONS_00014726-exon-sc0000197-1491911889:286021..286064 | Clytia hemisphaerica | exon |
| TCONS_00014726-exon-sc0000197-1491911889:284238..285676 | TCONS_00014726-exon-sc0000197-1491911889:284238..285676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000197 | supercontig | sc0000197:284238..286644 - |
Blast
BLAST of TCONS_00014726 vs. Swiss-Prot (Human)
Match: PLCX3 (PI-PLC X domain-containing protein 3 OS=Homo sapiens GN=PLCXD3 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 6.595e-19 Identity = 57/222 (25.68%), Postives = 104/222 (46.85%), Query Frame = -1
Query: 1080 VHGLFGTTLHDIFTQIKDFIIKYSKEIILLDLQSMATNHEISKENALKNVTDLLQDYFSDRIIFAENIQSYKLKDLWQQNISVIVFKRSRDNNKKDSILHAHASIRSPFDYKQFTQTWSW---------LHFLDLNYANRGKQGTDTFYVTQGIMQPHWMEVVIAGISENATLRSWVSSKATRKIRDWLHGKQIGKNGINIVIADFVEFSNFTDTVLDLNAV 1718
HGLF +++ +I F+ + KE++ LD + E + +L+D + +++ A Q LK LW+++ V+VF H+ ++ PF + W + FL + R K+G+ F+++Q ++ P V+ G++ LR ++ +A + W+ ++ G++GINIV ADFVE +F TV+ LN V
Sbjct: 113 AHGLFSAKVNEGLEEINAFLTDHHKEVVFLDFNHFYGMQKYHHEK----LVQMLKDIYGNKMCPAIFAQEVSLKYLWEKDYQVLVF------------YHSPVALEVPFLWPGQMMPAPWANTTDPEKLIQFLQASITERRKKGS--FFISQVVLTPK-ASTVVKGVASG--LRETITERALPAMMQWVRTQKPGESGINIVTADFVELGDFISTVIKLNYV 313
The following BLAST results are available for this feature:
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