TCONS_00014504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014504
Unique NameTCONS_00014504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014504 ID=TCONS_00014504|Name=TCONS_00014504|organism=Clytia hemisphaerica|type=transcript|length=1612bp
TCCTGATGTGAAAGAGAAAGCAAAGATCTTgatattatcaaaaaaaggaT
TTGCGCGAATGAGGAGGGATTGTTTTCTCAAAATCACGTTGATCTAGTTG
TCGCTGTGTTGAAAGCTTGTAGACTTTTCGAAATATTGACGAACCCAAGA
ACAAGATTTATACAAAAACAACATAATGTAGCTCCATATAATAAATAGCT
TTTGAAATACAATGGCAAAATCAAGTCTAAATAACAGTAATACAAGAAGA
GCCAGGACGTTGACAGAGGAGGATGCAGCAGAAGCTTTCGCAGATTTTGT
AGCCGATGGTTGTTGCTATAGTAACAATCTAAGTAACGTGAAAAACAGCG
TACGAACGAAGAAAATTACTGCAAGAAATTATCACCAGTACGTTTTAGAG
ACATTTTATGAAGAAAGGACGACAGTATGGCACCAAGAGCCTTACGTGGA
TCAAACGATAGACGGGATGGAGAATGGTTGTCCGACGCATCCGTGGAATA
TCCCTGTTTCAATGCCCTCTGTGTTTCAACCAAATCAACTATCCATTGAA
GTCCCTCATACTGCTTTCATCAAGGATTGTTCGACATGTCGACGCAACGG
AAGTCGAAAGTGTTCTTCGTGTCAAGGATGTGGCAAGATCAAATGTGGAG
TATGTGATGGACTTGGAGTTCTCCAACTGTTTTCACCAGATGAACTGACA
TTCGAAAATAGCACCTCCATAACAAACCGCTCATGTCCTCACTGTAACGG
TGGAAACAGAGAGTGCAAGAAATGTCAAGGCAATGgaaaaatcatttgtt
ttgtCTGCCAAGGTCATGGTGCTTTGAAAGTATCCACTCGATTAATTGTG
AAGTGGAAGCTGATGAAAGACGAGCGAATCATAGAACGATCACACATTCC
CAAACAACTATTCAAAGAAATCTCTGGCACGTCCGTCTTCCAAGAACAAA
ACGATCGAGTCTATCCTTTGCTCGATTTCCCTGAGAATGGAATCAACGAT
TTATCAGCCAAATTGATCAAAGGACACAACGAACAGCTAAAACATGCCAA
AATCCGAATGCAGAGACATTTCGTGAAAGAAGTTCCAGTGGCGAAAGTGC
AATCTGAATGGAACAAAAAAGAATTTACTTATTGGGTGTATGGCAACGAA
AACCGCGTCTTTTGTCCAAGAAGGCCTACTAAGTGTTCCGTTATGTAGGG
ATAAGTATCAGCACGAAgctttaatgaaaataaaatgataatCATTATAT
TGATTGTAGGCGTAGTACTGATACGTACTAATTTACTGtatatttgctta
aaaaagatgCTTTGTAAATATGACAAgaattcaaaattatttctaCCAAC
CacctttcttcttcttctttcccTTGGACTTGGCACCAGGCTTTTGCTGC
CTGGGTGGAACCACACTTGGTGATGGACCCGCTGAACTGCTGCCTGATTT
GGGAGATGCAATCGTTGGTTTCGGAGAGGCGGGcctgaaaattatgaaat
tgcaATTAAGAAATTACGTGTTACTCGTCAATGGGGGGATGTCAAGCAGC
TACCTCGAAACACTATGAGTACTAAGTACTTGTACTAGtactttcttgat
ttttgaaaattt
Run BLAST on NCBI

protein sequence of TCONS_00014504-protein

>TCONS_00014504-protein ID=TCONS_00014504-protein|Name=TCONS_00014504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MAKSSLNNSNTRRARTLTEEDAAEAFADFVADGCCYSNNLSNVKNSVRTK
KITARNYHQYVLETFYEERTTVWHQEPYVDQTIDGMENGCPTHPWNIPVS
MPSVFQPNQLSIEVPHTAFIKDCSTCRRNGSRKCSSCQGCGKIKCGVCDG
LGVLQLFSPDELTFENSTSITNRSCPHCNGGNRECKKCQGNGKIICFVCQ
GHGALKVSTRLIVKWKLMKDERIIERSHIPKQLFKEISGTSVFQEQNDRV
YPLLDFPENGINDLSAKLIKGHNEQLKHAKIRMQRHFVKEVPVAKVQSEW
NKKEFTYWVYGNENRVFCPRRPTKCSVM
Run BLAST on NCBI

transcript from alignment at sc0000188:148958..151841-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014504 ID=TCONS_00014504|Name=TCONS_00014504|organism=Clytia hemisphaerica|type=transcript|length=2884bp|location=Sequence derived from alignment at sc0000188:148958..151841- (Clytia hemisphaerica)
TCCTGATGTGAAAGAGAAAGCAAAGATCTTGATATTATCAAAAAAAGGAT
TTGCGCGAATGAGGAGGGATTGTTTTCTCAAAATCACGTTGATCTAGTTG
TCGCTGTGTTGAAAGCTTGTAGACTTTTCGAAATATTGACGAACCCAAGA
ACAAGATTTATACAAAAACAACATAATGTAGCTCCATATAATAAATAGCT
TTTGAAATACAATGGCAAAATCAAGTCTAAATAACAGTAATACAAGAAGA
GCCAGGTAAGTACACTACTGTGCAGTAAAGGTTTTTTCTAAGTGATCAAT
ATACGTTAGGTAGATAATTTTTCGAATTTTTTTGAATTCTTCAGGACGTT
GACAGAGGAGGATGCAGCAGAAGCTTTCGCAGATTTTGTAGCCGATGGTT
GTTGCTATAGTAACAATCTAAGTAACGTGAAAAACAGCGTACGAACGAAG
AAAATTACTGCAAGAAATTATCACCAGGTGAAATGTTCACTACCCTTCTC
ACTTTTCACTTTGTTTAAAAATGCTTTTACGAATATACGGGACCAGACAG
CTTTTTCTATGGTTAAGAGCGAATCTATGTTTTTGTCTATTGATCATATT
GTTGATGTTACAAGTGGGACGAAGACTACAAACTACTATTACTAACCGTC
AAAAACCTTTGCCAAATCAACAAGTTATCAAACAAGCTCTTCCCTCATTC
TCAGTACGTTTTAGAGACATTTTATGAAGAAAGGACGACAGTATGGCACC
AAGAGCCTTACGTGGATCAAACGATAGACGGGATGGAGAATGGTTGTCCG
ACGCATCCGTGGAATATCCCTGTTTCAATGCCCTCTGTGTTTCAACCAAA
TCAACTATCCATTGAAGTCCCTCATACTGCTTTCATCAAGGTACTCAACC
AATGTTTAACCAATCGAATCGAAGTGGTCTATAATATTCTAGAACGATCA
GATAAACGGTCAAATGATTACATGCTTAGTCGACTTTCCACCTACATCCG
TCAGCTTCCGACTACTAATTTGTGATGTAATTTAATCTCACAGACGAAAG
TCGAATATCATATTATCTTTCCCGAAATACATTTAGTTTCGAGAATATTA
ACCTCAAAGGTCATACTGTCTTCAAACTATTCAGTTTTATTTCTTTTACG
ACACGACAGGATTGTTCGACATGTCGACGCAACGGAAGTCGAAAGTGTTC
TTCGTGTCAAGGATGTGGCAAGGTAAGACCGTTGCAAACAGTAAACTAGT
AAACACAACAAAAAATGGCTCAAAACGAACAAATACGAGATCTTTATACC
ATCAAAGAACCATGAAAATAATCAAAGTAGCGTCGATTTCTTATAATCTC
AGTATATAGGCAGTAAAAATTAATTTCATTCAATTCAGATCAAATGTGGA
GTATGTGATGGACTTGGAGTTCTCCAACTGTTTTCACCAGATGAACTGAC
ATTCGAAAATAGCACCTCCATAACAAACCGCTCATGTCCTCACTGTAACG
GTGGAAACAGAGAGTGCAAGAAATGTCAAGGCAATGGAAAAATCATTTGT
TTTGTCTGCCAAGGTCATGGTGCTTTGAAAGTATCCACTCGATTAATTGT
GAAGTGGTAAGTATTGTCATTCATTCTCGTTTCTTATTTAAAAAGATATT
ATGTCGAATACCTCCAACCAAAGACTTTGATTTTAAATTCGACAGGGACT
ATTTAATCACAAGTAATAAAAACCTTGACAGGAAGCTGATGAAAGACGAG
CGAATCATAGAACGATCACACATTCCCAAACAACTATTCAAAGAAATCTC
TGGCACGTCCGTCTTCCAAGAACAAAACGATCGAGTCTATCCTTTGCTCG
ATTTCCCTGAGAATGGAATCAACGATTTATCAGCCAAATTGATCAAAGGA
CACAACGAACAGCTAAAACATGCCAAAATCCGAATGCAGGTACAGTCACT
CTCGTCCATTAGAATATACCTCTTAAATCTATCTTCAATTAGTTCAAATC
CATACTACATAAGATACTCGCAAGCACTAAGAATTTTAACTCGTCTCTGA
ACATGAAGATGAAAATAAACTTTTCCTTTGTTGCTGAAGTCTTTAAATTA
GCTGTGGTAAAATTACAAAAGCAAAAAAGAAAAACCTCCGGCGGTATTGT
GCGATTTTGAAAAGGTAATCTTTAATAAAAAATGTATCACTTATCAAAAT
GAGCGACATGTACACCAGATCGAGACGATTTGTTAAAAATGACAAATATT
AAACAATGTCATGATCATATTGATCAGATCAGATTGCTATTTTTTTATTT
AGTTTAAAAGTTAATTATAACATTTTCTGTTATAGAGACATTTCGTGAAA
GAAGTTCCAGTGGCGAAAGTGCAATCTGAATGGAACAAAAAAGAATTTAC
TTATTGGGTGTATGGCAACGAAAACCGCGTCTTTTGTCCAAGAAGGCCTA
CTAAGTGTTCCGTTATGTAGGGATAAGTATCAGCACGAAGCTTTAATGAA
AATAAAATGATAATCATTATATTGATTGTAGGCGTAGTACTGATACGTAC
TAATTTACTGTATATTTGCTTAAAAAAGATGCTTTGTAAATATGACAAGA
ATTCAAAATTATTTCTACCAACCACCTTTCTTCTTCTTCTTTCCCTTGGA
CTTGGCACCAGGCTTTTGCTGCCTGGGTGGAACCACACTTGGTGATGGAC
CCGCTGAACTGCTGCCTGATTTGGGAGATGCAATCGTTGGTTTCGGAGAG
GCGGGCCTGAAAATTATGAAATTGCAATTAAGAAATTACGTGTTACTCGT
CAATGGGGGGATGTCAAGCAGCTACCTCGAAACACTATGAGTACTAAGTA
CTTGTACTAGTACTTTCTTGATTTTTGAAAATTT

Coding sequence (CDS) from alignment at sc0000188:148958..151841-

>TCONS_00014504 ID=TCONS_00014504|Name=TCONS_00014504|organism=Clytia hemisphaerica|type=CDS|length=6909bp|location=Sequence derived from alignment at sc0000188:148958..151841- (Clytia hemisphaerica)
AGACATTTCGTGAAAGAAGTTCCAGTGGCGAAAGTGCAATCTGAATGGAA
CAAAAAAGAATTTACTTATTGGGTGTATGGCAACGAAAACCGCGTCTTTT
GTCCAAGAAGGCCTACTAAGTGTTCCGTTATGTAGGAAGCTGATGAAAGA
CGAGCGAATCATAGAACGATCACACATTCCCAAACAACTATTCAAAGAAA
TCTCTGGCACGTCCGTCTTCCAAGAACAAAACGATCGAGTCTATCCTTTG
CTCGATTTCCCTGAGAATGGAATCAACGATTTATCAGCCAAATTGATCAA
AGGACACAACGAACAGCTAAAACATGCCAAAATCCGAATGCAGATCAAAT
GTGGAGTATGTGATGGACTTGGAGTTCTCCAACTGTTTTCACCAGATGAA
CTGACATTCGAAAATAGCACCTCCATAACAAACCGCTCATGTCCTCACTG
TAACGGTGGAAACAGAGAGTGCAAGAAATGTCAAGGCAATGGAAAAATCA
TTTGTTTTGTCTGCCAAGGTCATGGTGCTTTGAAAGTATCCACTCGATTA
ATTGTGAAGTGGATTGTTCGACATGTCGACGCAACGGAAGTCGAAAGTGT
TCTTCGTGTCAAGGATGTGGCAAGTACGTTTTAGAGACATTTTATGAAGA
AAGGACGACAGTATGGCACCAAGAGCCTTACGTGGATCAAACGATAGACG
GGATGGAGAATGGTTGTCCGACGCATCCGTGGAATATCCCTGTTTCAATG
CCCTCTGTGTTTCAACCAAATCAACTATCCATTGAAGTCCCTCATACTGC
TTTCATCAAGGACGTTGACAGAGGAGGATGCAGCAGAAGCTTTCGCAGAT
TTTGTAGCCGATGGTTGTTGCTATAGTAACAATCTAAGTAACGTGAAAAA
CAGCGTACGAACGAAGAAAATTACTGCAAGAAATTATCACCAGATGGCAA
AATCAAGTCTAAATAACAGTAATACAAGAAGAGCCAGAGACATTTCGTGA
AAGAAGTTCCAGTGGCGAAAGTGCAATCTGAATGGAACAAAAAAGAATTT
ACTTATTGGGTGTATGGCAACGAAAACCGCGTCTTTTGTCCAAGAAGGCC
TACTAAGTGTTCCGTTATGTAGGAAGCTGATGAAAGACGAGCGAATCATA
GAACGATCACACATTCCCAAACAACTATTCAAAGAAATCTCTGGCACGTC
CGTCTTCCAAGAACAAAACGATCGAGTCTATCCTTTGCTCGATTTCCCTG
AGAATGGAATCAACGATTTATCAGCCAAATTGATCAAAGGACACAACGAA
CAGCTAAAACATGCCAAAATCCGAATGCAGATCAAATGTGGAGTATGTGA
TGGACTTGGAGTTCTCCAACTGTTTTCACCAGATGAACTGACATTCGAAA
ATAGCACCTCCATAACAAACCGCTCATGTCCTCACTGTAACGGTGGAAAC
AGAGAGTGCAAGAAATGTCAAGGCAATGGAAAAATCATTTGTTTTGTCTG
CCAAGGTCATGGTGCTTTGAAAGTATCCACTCGATTAATTGTGAAGTGGA
TTGTTCGACATGTCGACGCAACGGAAGTCGAAAGTGTTCTTCGTGTCAAG
GATGTGGCAAGTACGTTTTAGAGACATTTTATGAAGAAAGGACGACAGTA
TGGCACCAAGAGCCTTACGTGGATCAAACGATAGACGGGATGGAGAATGG
TTGTCCGACGCATCCGTGGAATATCCCTGTTTCAATGCCCTCTGTGTTTC
AACCAAATCAACTATCCATTGAAGTCCCTCATACTGCTTTCATCAAGGAC
GTTGACAGAGGAGGATGCAGCAGAAGCTTTCGCAGATTTTGTAGCCGATG
GTTGTTGCTATAGTAACAATCTAAGTAACGTGAAAAACAGCGTACGAACG
AAGAAAATTACTGCAAGAAATTATCACCAGATGGCAAAATCAAGTCTAAA
TAACAGTAATACAAGAAGAGCCAGAGACATTTCGTGAAAGAAGTTCCAGT
GGCGAAAGTGCAATCTGAATGGAACAAAAAAGAATTTACTTATTGGGTGT
ATGGCAACGAAAACCGCGTCTTTTGTCCAAGAAGGCCTACTAAGTGTTCC
GTTATGTAGGAAGCTGATGAAAGACGAGCGAATCATAGAACGATCACACA
TTCCCAAACAACTATTCAAAGAAATCTCTGGCACGTCCGTCTTCCAAGAA
CAAAACGATCGAGTCTATCCTTTGCTCGATTTCCCTGAGAATGGAATCAA
CGATTTATCAGCCAAATTGATCAAAGGACACAACGAACAGCTAAAACATG
CCAAAATCCGAATGCAGATCAAATGTGGAGTATGTGATGGACTTGGAGTT
CTCCAACTGTTTTCACCAGATGAACTGACATTCGAAAATAGCACCTCCAT
AACAAACCGCTCATGTCCTCACTGTAACGGTGGAAACAGAGAGTGCAAGA
AATGTCAAGGCAATGGAAAAATCATTTGTTTTGTCTGCCAAGGTCATGGT
GCTTTGAAAGTATCCACTCGATTAATTGTGAAGTGGATTGTTCGACATGT
CGACGCAACGGAAGTCGAAAGTGTTCTTCGTGTCAAGGATGTGGCAAGTA
CGTTTTAGAGACATTTTATGAAGAAAGGACGACAGTATGGCACCAAGAGC
CTTACGTGGATCAAACGATAGACGGGATGGAGAATGGTTGTCCGACGCAT
CCGTGGAATATCCCTGTTTCAATGCCCTCTGTGTTTCAACCAAATCAACT
ATCCATTGAAGTCCCTCATACTGCTTTCATCAAGGACGTTGACAGAGGAG
GATGCAGCAGAAGCTTTCGCAGATTTTGTAGCCGATGGTTGTTGCTATAG
TAACAATCTAAGTAACGTGAAAAACAGCGTACGAACGAAGAAAATTACTG
CAAGAAATTATCACCAGATGGCAAAATCAAGTCTAAATAACAGTAATACA
AGAAGAGCCAGAGACATTTCGTGAAAGAAGTTCCAGTGGCGAAAGTGCAA
TCTGAATGGAACAAAAAAGAATTTACTTATTGGGTGTATGGCAACGAAAA
CCGCGTCTTTTGTCCAAGAAGGCCTACTAAGTGTTCCGTTATGTAGGAAG
CTGATGAAAGACGAGCGAATCATAGAACGATCACACATTCCCAAACAACT
ATTCAAAGAAATCTCTGGCACGTCCGTCTTCCAAGAACAAAACGATCGAG
TCTATCCTTTGCTCGATTTCCCTGAGAATGGAATCAACGATTTATCAGCC
AAATTGATCAAAGGACACAACGAACAGCTAAAACATGCCAAAATCCGAAT
GCAGATCAAATGTGGAGTATGTGATGGACTTGGAGTTCTCCAACTGTTTT
CACCAGATGAACTGACATTCGAAAATAGCACCTCCATAACAAACCGCTCA
TGTCCTCACTGTAACGGTGGAAACAGAGAGTGCAAGAAATGTCAAGGCAA
TGGAAAAATCATTTGTTTTGTCTGCCAAGGTCATGGTGCTTTGAAAGTAT
CCACTCGATTAATTGTGAAGTGGATTGTTCGACATGTCGACGCAACGGAA
GTCGAAAGTGTTCTTCGTGTCAAGGATGTGGCAAGTACGTTTTAGAGACA
TTTTATGAAGAAAGGACGACAGTATGGCACCAAGAGCCTTACGTGGATCA
AACGATAGACGGGATGGAGAATGGTTGTCCGACGCATCCGTGGAATATCC
CTGTTTCAATGCCCTCTGTGTTTCAACCAAATCAACTATCCATTGAAGTC
CCTCATACTGCTTTCATCAAGGACGTTGACAGAGGAGGATGCAGCAGAAG
CTTTCGCAGATTTTGTAGCCGATGGTTGTTGCTATAGTAACAATCTAAGT
AACGTGAAAAACAGCGTACGAACGAAGAAAATTACTGCAAGAAATTATCA
CCAGATGGCAAAATCAAGTCTAAATAACAGTAATACAAGAAGAGCCAGAG
ACATTTCGTGAAAGAAGTTCCAGTGGCGAAAGTGCAATCTGAATGGAACA
AAAAAGAATTTACTTATTGGGTGTATGGCAACGAAAACCGCGTCTTTTGT
CCAAGAAGGCCTACTAAGTGTTCCGTTATGTAGGAAGCTGATGAAAGACG
AGCGAATCATAGAACGATCACACATTCCCAAACAACTATTCAAAGAAATC
TCTGGCACGTCCGTCTTCCAAGAACAAAACGATCGAGTCTATCCTTTGCT
CGATTTCCCTGAGAATGGAATCAACGATTTATCAGCCAAATTGATCAAAG
GACACAACGAACAGCTAAAACATGCCAAAATCCGAATGCAGATCAAATGT
GGAGTATGTGATGGACTTGGAGTTCTCCAACTGTTTTCACCAGATGAACT
GACATTCGAAAATAGCACCTCCATAACAAACCGCTCATGTCCTCACTGTA
ACGGTGGAAACAGAGAGTGCAAGAAATGTCAAGGCAATGGAAAAATCATT
TGTTTTGTCTGCCAAGGTCATGGTGCTTTGAAAGTATCCACTCGATTAAT
TGTGAAGTGGATTGTTCGACATGTCGACGCAACGGAAGTCGAAAGTGTTC
TTCGTGTCAAGGATGTGGCAAGTACGTTTTAGAGACATTTTATGAAGAAA
GGACGACAGTATGGCACCAAGAGCCTTACGTGGATCAAACGATAGACGGG
ATGGAGAATGGTTGTCCGACGCATCCGTGGAATATCCCTGTTTCAATGCC
CTCTGTGTTTCAACCAAATCAACTATCCATTGAAGTCCCTCATACTGCTT
TCATCAAGGACGTTGACAGAGGAGGATGCAGCAGAAGCTTTCGCAGATTT
TGTAGCCGATGGTTGTTGCTATAGTAACAATCTAAGTAACGTGAAAAACA
GCGTACGAACGAAGAAAATTACTGCAAGAAATTATCACCAGATGGCAAAA
TCAAGTCTAAATAACAGTAATACAAGAAGAGCCAGAGACATTTCGTGAAA
GAAGTTCCAGTGGCGAAAGTGCAATCTGAATGGAACAAAAAAGAATTTAC
TTATTGGGTGTATGGCAACGAAAACCGCGTCTTTTGTCCAAGAAGGCCTA
CTAAGTGTTCCGTTATGTAGGAAGCTGATGAAAGACGAGCGAATCATAGA
ACGATCACACATTCCCAAACAACTATTCAAAGAAATCTCTGGCACGTCCG
TCTTCCAAGAACAAAACGATCGAGTCTATCCTTTGCTCGATTTCCCTGAG
AATGGAATCAACGATTTATCAGCCAAATTGATCAAAGGACACAACGAACA
GCTAAAACATGCCAAAATCCGAATGCAGATCAAATGTGGAGTATGTGATG
GACTTGGAGTTCTCCAACTGTTTTCACCAGATGAACTGACATTCGAAAAT
AGCACCTCCATAACAAACCGCTCATGTCCTCACTGTAACGGTGGAAACAG
AGAGTGCAAGAAATGTCAAGGCAATGGAAAAATCATTTGTTTTGTCTGCC
AAGGTCATGGTGCTTTGAAAGTATCCACTCGATTAATTGTGAAGTGGATT
GTTCGACATGTCGACGCAACGGAAGTCGAAAGTGTTCTTCGTGTCAAGGA
TGTGGCAAGTACGTTTTAGAGACATTTTATGAAGAAAGGACGACAGTATG
GCACCAAGAGCCTTACGTGGATCAAACGATAGACGGGATGGAGAATGGTT
GTCCGACGCATCCGTGGAATATCCCTGTTTCAATGCCCTCTGTGTTTCAA
CCAAATCAACTATCCATTGAAGTCCCTCATACTGCTTTCATCAAGGACGT
TGACAGAGGAGGATGCAGCAGAAGCTTTCGCAGATTTTGTAGCCGATGGT
TGTTGCTATAGTAACAATCTAAGTAACGTGAAAAACAGCGTACGAACGAA
GAAAATTACTGCAAGAAATTATCACCAGATGGCAAAATCAAGTCTAAATA
ACAGTAATACAAGAAGAGCCAGAGACATTTCGTGAAAGAAGTTCCAGTGG
CGAAAGTGCAATCTGAATGGAACAAAAAAGAATTTACTTATTGGGTGTAT
GGCAACGAAAACCGCGTCTTTTGTCCAAGAAGGCCTACTAAGTGTTCCGT
TATGTAGGAAGCTGATGAAAGACGAGCGAATCATAGAACGATCACACATT
CCCAAACAACTATTCAAAGAAATCTCTGGCACGTCCGTCTTCCAAGAACA
AAACGATCGAGTCTATCCTTTGCTCGATTTCCCTGAGAATGGAATCAACG
ATTTATCAGCCAAATTGATCAAAGGACACAACGAACAGCTAAAACATGCC
AAAATCCGAATGCAGATCAAATGTGGAGTATGTGATGGACTTGGAGTTCT
CCAACTGTTTTCACCAGATGAACTGACATTCGAAAATAGCACCTCCATAA
CAAACCGCTCATGTCCTCACTGTAACGGTGGAAACAGAGAGTGCAAGAAA
TGTCAAGGCAATGGAAAAATCATTTGTTTTGTCTGCCAAGGTCATGGTGC
TTTGAAAGTATCCACTCGATTAATTGTGAAGTGGATTGTTCGACATGTCG
ACGCAACGGAAGTCGAAAGTGTTCTTCGTGTCAAGGATGTGGCAAGTACG
TTTTAGAGACATTTTATGAAGAAAGGACGACAGTATGGCACCAAGAGCCT
TACGTGGATCAAACGATAGACGGGATGGAGAATGGTTGTCCGACGCATCC
GTGGAATATCCCTGTTTCAATGCCCTCTGTGTTTCAACCAAATCAACTAT
CCATTGAAGTCCCTCATACTGCTTTCATCAAGGACGTTGACAGAGGAGGA
TGCAGCAGAAGCTTTCGCAGATTTTGTAGCCGATGGTTGTTGCTATAGTA
ACAATCTAAGTAACGTGAAAAACAGCGTACGAACGAAGAAAATTACTGCA
AGAAATTATCACCAGATGGCAAAATCAAGTCTAAATAACAGTAATACAAG
AAGAGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008112XLOC_008112Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014504-proteinTCONS_00014504-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014504-exon-sc0000188-1575043694:151587..151841TCONS_00014504-exon-sc0000188-1575043694:151587..151841Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1575043694:151365..151497TCONS_00014504-exon-sc0000188-1575043694:151365..151497Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1575043694:150952..151137TCONS_00014504-exon-sc0000188-1575043694:150952..151137Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1575043694:150620..150682TCONS_00014504-exon-sc0000188-1575043694:150620..150682Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1575043694:150236..150453TCONS_00014504-exon-sc0000188-1575043694:150236..150453Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1575043694:149903..150110TCONS_00014504-exon-sc0000188-1575043694:149903..150110Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1575043694:148958..149506TCONS_00014504-exon-sc0000188-1575043694:148958..149506Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1510915933:151587..151841TCONS_00014504-exon-sc0000188-1510915933:151587..151841Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1510915933:151365..151497TCONS_00014504-exon-sc0000188-1510915933:151365..151497Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1510915933:150952..151137TCONS_00014504-exon-sc0000188-1510915933:150952..151137Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1510915933:150620..150682TCONS_00014504-exon-sc0000188-1510915933:150620..150682Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1510915933:150236..150453TCONS_00014504-exon-sc0000188-1510915933:150236..150453Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1510915933:149903..150110TCONS_00014504-exon-sc0000188-1510915933:149903..150110Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1510915933:148958..149506TCONS_00014504-exon-sc0000188-1510915933:148958..149506Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1491911889:151587..151841TCONS_00014504-exon-sc0000188-1491911889:151587..151841Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1491911889:151365..151497TCONS_00014504-exon-sc0000188-1491911889:151365..151497Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1491911889:150952..151137TCONS_00014504-exon-sc0000188-1491911889:150952..151137Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1491911889:150620..150682TCONS_00014504-exon-sc0000188-1491911889:150620..150682Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1491911889:150236..150453TCONS_00014504-exon-sc0000188-1491911889:150236..150453Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1491911889:149903..150110TCONS_00014504-exon-sc0000188-1491911889:149903..150110Clytia hemisphaericaexon
TCONS_00014504-exon-sc0000188-1491911889:148958..149506TCONS_00014504-exon-sc0000188-1491911889:148958..149506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:148958..151841 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.18971	2.95859	5.65281	5.08869	4.24796	5.73276	1.45816	1.22883	0.847413	1.33059	1.998	3.27196	3.82305	4.06955	5.30238	4.62387	1.20486	2.08035	2.64436	3.53588	0.509707	0.836694	0	0
Blast
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BLAST of TCONS_00014504 vs. Swiss-Prot (Human)
Match: SSUH2 (Protein SSUH2 homolog OS=Homo sapiens GN=SSUH2 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.457e-44
Identity = 86/287 (29.97%), Postives = 145/287 (50.52%), Query Frame = 2 
Query:  311 CCYSNNLSNVKNSVRTKKITARNYHQYVLETFYEERTTVWHQEPYVDQTIDGMENGCPTHPWNIPVSMPSVFQPNQLSIEVPHTAFIKDCSTCRRNGSRKCSSCQGCGKIKCGVCDGLGVLQLFSPDELTFENSTSITNRSCPHCNG-GNRECKKCQGNGKIICFVCQGHGALKVSTRLIVKWKLMKDERIIE-RSHIPKQLFKEISGTSVFQEQNDRVYPLLDFPENGINDLSAKLIKGHNEQL-KHAKIRMQRHFVKEVPVAKVQSEWNKKEFTYWVYGNENRVF 1162
            CCYS   S V   +  +++  +   +Y LETF E R + W  +P+ + ++DG + G     W+I V  P +FQ +    +VPH++ +K+C  C   G  KCS C G G ++C  C G                  +  +R C  C G G R C  C G G   C  C+G   L    +L++ WK    E + E R + P++L  +  G ++F+++N  VYP++DFP   I+  S + I  H+  L   A++  QR  ++ +P+ +V   +  K + Y++YG +++V+
Sbjct:   69 CCYS---STVAGDLVIQELKRQTLCRYRLETFSESRISEWTFQPFTNHSVDGPQRGASPRLWDIKVQGPPMFQEDTRKFQVPHSSLVKECHKCHGRGRYKCSGCHGAGTVRCPSCCG--------------AKRKAKQSRRCQLCAGSGRRRCSTCSGRGNKTCATCKGEKKLLHFIQLVIMWKNSLFEFVSEHRLNCPRELLAKAKGENLFKDENSVVYPIVDFPLRDISLASQRGIAEHSAALASRARVLQQRQTIELIPLTEVHYWYQGKTYVYYIYGTDHQVY 338
The following BLAST results are available for this feature:
BLAST of TCONS_00014504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSUH27.457e-4429.97Protein SSUH2 homolog OS=Homo sapiens GN=SSUH2 PE=... [more]
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