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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001342 ID=TCONS_00001342|Name=TCONS_00001342|organism=Clytia hemisphaerica|type=transcript|length=1385bp
caagcaacaaatcataaacaacaaaaaatctGACAAAGAGGAAAAAAGGA
TTCTATTCTCGGAGAATCATGTTTAGAACTGTATTCTTAGGTATTCTGTG
CATTTACTGGTGTGAatgttcaaaacaaatttgGAACCATGCTGCTATTG
GTAAGGCGTACGCCTGGCAGCCTTTTTACGAAGTATCTCTTATGGATGAG
CGACAATGTTTTGGTCAATGCGTTTACAATGAAAAATGTCTCTCATTCGA
GGTTTATCAAACAGTTCCTCGAAAAGTCGAATGtcgattgtttgattttg
tGTACGAGTATTATACCAAATTCAAAGAGTTGGATATGAAAGTGGGGTCA
AAGATCTATTCGAAACCGTTAGAAAAAGTTTGTACGACATGTAAAAGTTG
TCTTGATTATTCAAAAAAAGGACACTTGAAAAATGGCGTTTACGAAGTAG
ATTTGTTAGGAACACGACGTGATGTTTATTGCTTCATGGAAGGCGAGGGC
GGAGGGTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAGTTTCATTTGA
AGATAAAGAATGGGCAGAGTACAAAGATGGATTTGGAGATGGGTCAGGAG
AATATTGGTTAGGTCTTGAAACACTTCATCAGTTGACATCAACGCAATCA
TATGACTTATACGCGAGGGCGATGGATTTTTCCGGTGTTTGGGAGAGCAA
AAGATTCGCCGGTTTTACCATCGGCTCTGAGTTAATGGAGAGATACAAAT
TCGACTTCCAGTCTATCTACAGTGGAACTCAATACAGCAATCATAGTTTA
TTTGAAAGAGCGAAGGGCATGAAATTCAGCACTCCGACCCGTGACAACGA
TTTGTACACACCAATTCCAACTTGTGCTATTAGGTTTCCAGGAGGTTGGT
GGTTTAGCGATTGTCACTACGATTTCATGAACGGAGCCTACTCGCAACAA
GAAGCTTGTGATAGAGCAACTGGTATTCATTGGTACAAACGTTTCGGAAA
CAATCACAATAAATGTTTGAAAGAAACTCTCTTAATGATTAGAGAAAATT
AATCAATATTCTATATTCTATAATAGAAAAATGTACGTCAAAGATTGTAA
AATAGGGGTGTTTTGACACACCCGGTACTTGAGATGCTCTAAAGATGTTA
GTCAAAATCAAATGGTCTTTCCAACGGCAGCTAGGGAATTTCTTTGTCCC
GGATTAGAAAAGTTAGTCAAAGGTGTGCTCCAAGATAACATTATTCTGTA
CAAACTCGAACGCCCACGGGCGTATTTTGCCTTTTAGAAGAATCTTACCG
TGGGTCGGTCTGTTACGGTTAGAAATTCTGTGTCTCGTTagtaccactga
cctttatatatccctggacaaagttactcaatgcc Run BLAST on NCBI protein sequence of TCONS_00001342-protein >TCONS_00001342-protein ID=TCONS_00001342-protein|Name=TCONS_00001342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MFRTVFLGILCIYWCECSKQIWNHAAIGKAYAWQPFYEVSLMDERQCFGQ
CVYNEKCLSFEVYQTVPRKVECRLFDFVYEYYTKFKELDMKVGSKIYSKP
LEKVCTTCKSCLDYSKKGHLKNGVYEVDLLGTRRDVYCFMEGEGGGWMAF
QRRYDGSVSFEDKEWAEYKDGFGDGSGEYWLGLETLHQLTSTQSYDLYAR
AMDFSGVWESKRFAGFTIGSELMERYKFDFQSIYSGTQYSNHSLFERAKG
MKFSTPTRDNDLYTPIPTCAIRFPGGWWFSDCHYDFMNGAYSQQEACDRA
TGIHWYKRFGNNHNKCLKETLLMIREN Run BLAST on NCBI transcript from alignment at sc0000010:311634..314105+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001342 ID=TCONS_00001342|Name=TCONS_00001342|organism=Clytia hemisphaerica|type=transcript|length=2472bp|location=Sequence derived from alignment at sc0000010:311634..314105+ (Clytia hemisphaerica)
caagcaacaaatcataaacaacaaaaaatctGACAAAGAGGAAAAAAGGA
TTCTATTCTCGGAGAATCATGTTTAGAACTGTATTCTTAGGTATTCTGTG
CATTTACTGGTGTGAatgttcaaaacaaatttgGAACCATGCTGCTATTG
GTAAGGCGTACGCCTGGCAGCCTTTTTACGAAGTATCTCTTATGGATGAG
CGACAATGTTTTGGTCAATGCGTTTACAATGAAAAATGTCTCTCATTCGA
GGTTTATCAAACAGTTCCTCGAAAAGTCGAATGtcgattgtttgattttg
tGTACGAGTATTATACCAAATTCAAAGAGTTGGATATGAAAGTGGGGTCA
AAGATCTATTCGAAACCGTTAGAAAAAGTTTGTACGACATGTAAAAGTTG
TCTTGATTATTCAAAAAAAGGACACTTGAAAAATGGCGTTTACGAAGTAG
ATTTGTTAGGAACACGACGTGATGTTTATTGCTTCATGGAAGGCGAGGGC
GGAGGGTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAGTTTCATTTGA
AGATAAAGAATGGGCAGAGTACAAAGATGGATTTGGAGATGGGTCAGGTA
AGATATTTCTGAACAagcttttgtaatgaataacaGAAAATCAAACTAAA
AGAAAATCAAGACCAAACTTGATGTTCATTTTACATTCGCAGCATTTAAA
GAAGTactcgtttttttataagaacatccacaaattttgaagccttcgga
tgttctttactttttgagtttcaagcctaaaaatgttcttaatatgttct
taaatTCCCCATTTTGTGAGTGTGAGTGccaattttcttaagaaatcggg
tgttgtccacaaagccttaacatattttcaacttgttcttaacattttag
ccatcgaagccttatgttcttgtatagtttgtttttattttgaaaacgtG
TAGGATAAAGGAAACCTAAATACTCATAGTGCAGAGTTAAAGTTTTCTTC
TTATTTCATCAAATTCACAGGAGAATATTGGTTAGGTCTTGAAACACTTC
ATCAGTTGACATCAACGCAATCATATGACTTATACGCGAGGGCGATGGAT
TTTTCCGGTGTTTGGGAGAGCAAAAGATTCGCCGGTTTTACCATCGGCTC
TGAGTTAATGGAGAGATACAAATTCGACTTCCAGTCTATCTACAGTGGAA
CTCAATACAGCAATCATAGTTTATTTGAAAGAGCGAAGGGCATGAAATTC
AGCACTCCGACCCGTGACAACGATTTGTACACACCAATTCCAACTTGTGC
TATTAGGTTTCCAGGAGGCAAGCATTATACTCTAAGGTCCCAAATAGTAG
GAGGGGAGGGAGTCCGGATAAAAGGGAAGGGTCCCGAAATTTCTTTTGAA
CCGCGAACCTAATTGGCGGGGCCAGTCCTGATAAGAAGAAGGGGAGAATT
TCATATATTAATAAagttttaataaacgggggaagGGGTGCGTTCTTTTC
GAGACCTTAGGGTAGgtgaatattttgaatttgtgtCGAAAAAAGATATT
TGCCGTAATTTGGATTACAAACGGCCGTCTTTTAGGCTACGTCATGTTTT
CCTTCCTACTAGCGCTGTTTATTACGAAGACTGGTACCTTATCGGctctt
tttacaccggcccttattggcgttatttttgggcttgtggcgtaataagg
gccggcgttaaaagggccaagattttgcaattttaacctaaaagcggagt
taattttttatcattatttctcaattcaaaggattttaggtatgattgga
agacaaaaattattatccattgttttactccaaaATCAGGCTGTGatgta
ataagggccggcgtttaatgggccggcgttaaattagggccggcgtaaaa
agggccgataaggtagtctTTTTGATCGACTATTCGAGCTGTGTGAATCC
TGACGTGCAATTTCTACTTATTGTTTTAAAGGTTGGTGGTTTAGCGATTG
TCACTACGATTTCATGAACGGAGCCTACTCGCAACAAGAAGCTTGTGATA
GAGCAACTGGTATTCATTGGTACAAACGTTTCGGAAACAATCACAATAAA
TGTTTGAAAGAAACTCTCTTAATGATTAGAGAAAATTAATCAATATTCTA
TATTCTATAATAGAAAAATGTACGTCAAAGATTGTAAAATAGGGGTGTTT
TGACACACCCGGTACTTGAGATGCTCTAAAGATGTTAGTCAAAATCAAAT
GGTCTTTCCAACGGCAGCTAGGGAATTTCTTTGTCCCGGATTAGAAAAGT
TAGTCAAAGGTGTGCTCCAAGATAACATTATTCTGTACAAACTCGAACGC
CCACGGGCGTATTTTGCCTTTTAGAAGAATCTTACCGTGGGTCGGTCTGT
TACGGTTAGAAATTCTGTGTCTCGTTagtaccactgacctttatatatcc
ctggacaaagttactcaatgcc Coding sequence (CDS) from alignment at sc0000010:311634..314105+ >TCONS_00001342 ID=TCONS_00001342|Name=TCONS_00001342|organism=Clytia hemisphaerica|type=CDS|length=2952bp|location=Sequence derived from alignment at sc0000010:311634..314105+ (Clytia hemisphaerica)
ATGTTTAGAACTGTATTCTTAGGTATTCTGTGCATTTACTGGTGTGAatg
ttcaaaacaaatttgGAACCATGCTGCTATTGGTAAGGCGTACGCCTGGC
AGCCTTTTTACGAAGTATCTCTTATGGATGAGCGACAATGTTTTGGTCAA
TGCGTTTACAATGAAAAATGTCTCTCATTCGAGGTTTATCAAACAGTTCC
TCGAAAAGTCGAATGtcgattgtttgattttgtGTACGAGTATTATACCA
AATTCAAAGAGTTGGATATGAAAGTGGGGTCAAAGATCTATTCGAAACCG
TTAGAAAAAGTTTGTACGACATGTAAAAGTTGTCTTGATTATTCAAAAAA
AGGACACTTGAAAAATGGCGTTTACGAAGTAGATTTGTTAGGAACACGAC
GTGATGTTTATTGCTTCATGGAAGGCGAGGGCGGAGGGTGGATGGCGTTT
CAAAGGCGTTATGATGGTTCAGTTTCATTTGAAGATAAAGAATGGGCAGA
GTACAAAGATGGATTTGGAGATGGGTCAGGAGAATATTGGTTAGGTCTTG
AAACACTTCATCAGTTGACATCAACGCAATCATATGACTTATACGCGAGG
GCGATGGATTTTTCCGGTGTTTGGGAGAGCAAAAGATTCGCCGGTTTTAC
CATCGGCTCTGAGTTAATGGAGAGATACAAATTCGACTTCCAGTCTATCT
ACAGTGGAACTCAATACAGCAATCATAGTTTATTTGAAAGAGCGAAGGGC
ATGAAATTCAGCACTCCGACCCGTGACAACGATTTGTACACACCAATTCC
AACTTGTGCTATTAGGTTTCCAGGAGGTTGGTGGTTTAGCGATTGTCACT
ACGATTTCATGAACGGAGCCTACTCGCAACAAGAAGCTTGTGATAGAGCA
ACTGGTATTCATTGGTACAAACGTTTCGGAAACAATCACAATAAATGTTT
GAAAGAAACTCTCTTAATGATTAGAGAAAATTAAATGTTTAGAACTGTAT
TCTTAGGTATTCTGTGCATTTACTGGTGTGAatgttcaaaacaaatttgG
AACCATGCTGCTATTGGTAAGGCGTACGCCTGGCAGCCTTTTTACGAAGT
ATCTCTTATGGATGAGCGACAATGTTTTGGTCAATGCGTTTACAATGAAA
AATGTCTCTCATTCGAGGTTTATCAAACAGTTCCTCGAAAAGTCGAATGt
cgattgtttgattttgtGTACGAGTATTATACCAAATTCAAAGAGTTGGA
TATGAAAGTGGGGTCAAAGATCTATTCGAAACCGTTAGAAAAAGTTTGTA
CGACATGTAAAAGTTGTCTTGATTATTCAAAAAAAGGACACTTGAAAAAT
GGCGTTTACGAAGTAGATTTGTTAGGAACACGACGTGATGTTTATTGCTT
CATGGAAGGCGAGGGCGGAGGGTGGATGGCGTTTCAAAGGCGTTATGATG
GTTCAGTTTCATTTGAAGATAAAGAATGGGCAGAGTACAAAGATGGATTT
GGAGATGGGTCAGGAGAATATTGGTTAGGTCTTGAAACACTTCATCAGTT
GACATCAACGCAATCATATGACTTATACGCGAGGGCGATGGATTTTTCCG
GTGTTTGGGAGAGCAAAAGATTCGCCGGTTTTACCATCGGCTCTGAGTTA
ATGGAGAGATACAAATTCGACTTCCAGTCTATCTACAGTGGAACTCAATA
CAGCAATCATAGTTTATTTGAAAGAGCGAAGGGCATGAAATTCAGCACTC
CGACCCGTGACAACGATTTGTACACACCAATTCCAACTTGTGCTATTAGG
TTTCCAGGAGGTTGGTGGTTTAGCGATTGTCACTACGATTTCATGAACGG
AGCCTACTCGCAACAAGAAGCTTGTGATAGAGCAACTGGTATTCATTGGT
ACAAACGTTTCGGAAACAATCACAATAAATGTTTGAAAGAAACTCTCTTA
ATGATTAGAGAAAATTAAATGTTTAGAACTGTATTCTTAGGTATTCTGTG
CATTTACTGGTGTGAatgttcaaaacaaatttgGAACCATGCTGCTATTG
GTAAGGCGTACGCCTGGCAGCCTTTTTACGAAGTATCTCTTATGGATGAG
CGACAATGTTTTGGTCAATGCGTTTACAATGAAAAATGTCTCTCATTCGA
GGTTTATCAAACAGTTCCTCGAAAAGTCGAATGtcgattgtttgattttg
tGTACGAGTATTATACCAAATTCAAAGAGTTGGATATGAAAGTGGGGTCA
AAGATCTATTCGAAACCGTTAGAAAAAGTTTGTACGACATGTAAAAGTTG
TCTTGATTATTCAAAAAAAGGACACTTGAAAAATGGCGTTTACGAAGTAG
ATTTGTTAGGAACACGACGTGATGTTTATTGCTTCATGGAAGGCGAGGGC
GGAGGGTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAGTTTCATTTGA
AGATAAAGAATGGGCAGAGTACAAAGATGGATTTGGAGATGGGTCAGGAG
AATATTGGTTAGGTCTTGAAACACTTCATCAGTTGACATCAACGCAATCA
TATGACTTATACGCGAGGGCGATGGATTTTTCCGGTGTTTGGGAGAGCAA
AAGATTCGCCGGTTTTACCATCGGCTCTGAGTTAATGGAGAGATACAAAT
TCGACTTCCAGTCTATCTACAGTGGAACTCAATACAGCAATCATAGTTTA
TTTGAAAGAGCGAAGGGCATGAAATTCAGCACTCCGACCCGTGACAACGA
TTTGTACACACCAATTCCAACTTGTGCTATTAGGTTTCCAGGAGGTTGGT
GGTTTAGCGATTGTCACTACGATTTCATGAACGGAGCCTACTCGCAACAA
GAAGCTTGTGATAGAGCAACTGGTATTCATTGGTACAAACGTTTCGGAAA
CAATCACAATAAATGTTTGAAAGAAACTCTCTTAATGATTAGAGAAAATT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001342-exon-sc0000010-1491911889:311634..312230 | TCONS_00001342-exon-sc0000010-1491911889:311634..312230 | Clytia hemisphaerica | exon |
| TCONS_00001342-exon-sc0000010-1510915933:311634..312230 | TCONS_00001342-exon-sc0000010-1510915933:311634..312230 | Clytia hemisphaerica | exon |
| TCONS_00001342-exon-sc0000010-1575043694:311634..312230 | TCONS_00001342-exon-sc0000010-1575043694:311634..312230 | Clytia hemisphaerica | exon |
| TCONS_00001342-exon-sc0000010-1491911889:312654..312950 | TCONS_00001342-exon-sc0000010-1491911889:312654..312950 | Clytia hemisphaerica | exon |
| TCONS_00001342-exon-sc0000010-1510915933:312654..312950 | TCONS_00001342-exon-sc0000010-1510915933:312654..312950 | Clytia hemisphaerica | exon |
| TCONS_00001342-exon-sc0000010-1575043694:312654..312950 | TCONS_00001342-exon-sc0000010-1575043694:312654..312950 | Clytia hemisphaerica | exon |
| TCONS_00001342-exon-sc0000010-1491911889:313615..314105 | TCONS_00001342-exon-sc0000010-1491911889:313615..314105 | Clytia hemisphaerica | exon |
| TCONS_00001342-exon-sc0000010-1510915933:313615..314105 | TCONS_00001342-exon-sc0000010-1510915933:313615..314105 | Clytia hemisphaerica | exon |
| TCONS_00001342-exon-sc0000010-1575043694:313615..314105 | TCONS_00001342-exon-sc0000010-1575043694:313615..314105 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:311634..314105 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00001342 vs. Swiss-Prot (Human)
Match: ANGP2 (Angiopoietin-2 OS=Homo sapiens GN=ANGPT2 PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.098e-31 Identity = 83/220 (37.73%), Postives = 114/220 (51.82%), Query Frame = 3
Query: 393 KSCLDYSKKGHLKNGVYEVDLLGTRRDV--YCFMEGEGGGWMAFQRRYDGSVSFEDKEWAEYKDGFGDGSGEYWLGLETLHQLTSTQSYDLYARAMDFSGVWESKRFAGFTIGSELMERYKFDFQSIYSGTQYSNHSLFERAKGMKFSTPTRDNDLYTPIPTCAIRFPGGWWFSDCHYDFMNGA-YSQQEACDRATGIHWYKRFGNNHNKCLKETLLMIR 1043
+ C + K GH NG+Y + + ++ YC ME GGGW QRR DGSV F+ + W EYK GFG+ SGEYWLG E + QLT+ Q Y L D+ G + F + SE + Y+ + + +GT S+ + G FST DND I C+ GGWWF C +NG Y Q++ ++ GI WY G+ + LK T +MIR
Sbjct: 282 RDCAEVFKSGHTTNGIYTLTFPNSTEEIKAYCDMEAGGGGWTIIQRREDGSVDFQ-RTWKEYKVGFGNPSGEYWLGNEFVSQLTNQQRYVLKIHLKDWEGNEAYSLYEHFYLSSEEL-NYRIHLKGL-TGTAGKISSISQ--PGNDFSTKDGDND--KCICKCSQMLTGGWWFDACGPSNLNGMYYPQRQNTNKFNGIKWYYWKGSGY--SLKATTMMIR 492
The following BLAST results are available for this feature:
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